Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002859

Physical Location & Seq

Genomic Coordinates Forward (+)

31549769 .. 31554720

Gene Structure 4952 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0195100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGGGAAGAAGAGAAAGTCGGTGGCCACCAGCCTTGACGAGGTGGATCGAAGCATGTACACCTCCTTCTGCAGCGCTGCCAATTCCCTCTCTCAGCTCTACACACAAGCCATGAACCACCAGAAGCTTTCCTTCCAAGCCGGTGAACGCCATGCCCTCGATAAAATTTATCAGTGGATCTGTAGACAACAAGAAGGGGGATCTAGAGTTGCAACAGGCGATATACTCAACTACCTTCAGAATGAGTTGGACTATTGTGGAGAAGAGCCGTCAATGTCCCCTAGAGTGGCAGTGCAACATCAGCATACACCGTCCTCTCTGCATTTCACAAATTCCGGTCTTCCAATATCTTCTGGCTCGTCTGCCCCAAGTACTGGGCAGGGAATTCGTTCTGAGCAGTGTGATCATCAGTCCAAGAATTCTGTCTTCTCAAATGCTCTGTCGAGCCCTGTTCGCCAGAGTCTTCAGCACTATCACATTTCTTACCCGGGTCCTGGTCTGCCATCTGGAAATGGTGCCCGAAACAATGAACCTAACTTTCTTCAACCAAACAGGGATGTTAATCCTCCGAGCTCCAACGACTCTTCGATGGACATGCATGCAGATAGTCCTGGTCACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

207

Amino Acids

22.68

Weight (kDa)

6.54

Isoelectric Point (pI)

66.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAPR1-like	PF15251	15 - 145	5.2e-06	Telomere attrition and p53 response 1 protein-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002859)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21560 FvH4_2g21561
malus_domestica	MD05G1198800.v1.1 MD10G1185000.v1.1
prunus_persica	Prupe.8G224700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0288241 RchiOBHm_Chr6g0288251 RchiOBHm_Chr6g0288261
rosa_laevigata	RLG00000012420 RLG00000012421 RLG00000012422 RLG00000017373 RLG00000017374
rosa_multiflora	Rmu_co8125528.1_g000001 Rmu_co8198010.1_g000001 Rmu_co8388259.1_g000001 Rmu_sc0001038.1_g000001 Rmu_sc0004300.1_g000010 Rmu_sc0028578.1_g000001 Rmu_sc0028578.1_g000002 Rmu_sc0042461.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180280 Rroxscaffold_7G00180290 Rroxscaffold_7G00180310
rosa_rugosa	Rorug06G0195000 Rorug06G0195100 Rorug06G0195200
rosa_samantha	Rh6AG306000 Rh6AG306100 Rh6AG306200 Rh6BG311600 Rh6BG311700 Rh6BG311800 Rh6CG319600 Rh6CG319700 Rh6DG304900 Rh6DG305000
rosa_wichuraiana	Rw6G026460 Rw6G026470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	515
AccB7I	CCANNNNNTGG	1 cut(s)	374
AccI	GTMKAC	1 cut(s)	184
AclWI	GGATC	3 cut(s)	54, 185, 208
AcoI	YGGCCR	1 cut(s)	24
AcsI	RAATTY	4 cut(s)	165, 331, 384, 418
AcuI	CTGAAG	2 cut(s)	221, 449
AfaI	GTAC	2 cut(s)	59, 373
AfeI	AGCGCT	1 cut(s)	76
AfiI	CCNNNNNNNGG	4 cut(s)	40, 286, 374, 494
AgsI	TTSAA	1 cut(s)	545
AjnI	CCWGG	2 cut(s)	493, 610
AluBI	AGCT	3 cut(s)	97, 127, 573
AluI	AGCT	3 cut(s)	97, 127, 573
Alw21I	GWGCWC	1 cut(s)	575
AlwI	GGATC	3 cut(s)	54, 185, 208
Ama87I	CYCGRG	1 cut(s)	487
Aor51HI	AGCGCT	1 cut(s)	76
AoxI	GGCC	1 cut(s)	24
ApeKI	GCWGC	2 cut(s)	72, 77
ApoI	RAATTY	4 cut(s)	165, 331, 384, 418
ArsI	GACNNNNNNTTYG	2 cut(s)	425, 457
Asp700I	GAANNNNTTC	1 cut(s)	388
AspLEI	GCGC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	491
AsuC2I	CCSGG	2 cut(s)	488, 489
AsuHPI	GGTGA	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	487
AvaII	GGWCC	1 cut(s)	491
BaeGI	GKGCMC	1 cut(s)	520
BalI	TGGCCA	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	515
BanII	GRGCYC	2 cut(s)	449, 575
BarI	GAAGNNNNNNTAC	2 cut(s)	50, 82
BbsI	GAAGAC	3 cut(s)	332, 418, 455
Bbv12I	GWGCWC	1 cut(s)	575
BbvI	GCAGC	2 cut(s)	64, 84
BccI	CCATC	2 cut(s)	511, 583
BceAI	ACGGC	1 cut(s)	253
BcgI	CGANNNNNNTGC	4 cut(s)	368, 402, 577, 611
BciT130I	CCWGG	2 cut(s)	495, 612
BclI	TGATCA	1 cut(s)	403
BcnI	CCSGG	2 cut(s)	488, 489
BfaI	CTAG	2 cut(s)	204, 282
BfmI	CTRYAG	2 cut(s)	70, 181
BfoI	RGCGCY	1 cut(s)	78
BisI	GCNGC	2 cut(s)	73, 78
BlsI	GCNGC	2 cut(s)	74, 79
BmcAI	AGTACT	1 cut(s)	373
Bme1390I	CCNGG	4 cut(s)	488, 489, 495, 612
Bme18I	GGWCC	1 cut(s)	491
BmeT110I	CYCGRG	1 cut(s)	487
BmgT120I	GGNCC	1 cut(s)	491
BmiI	GGNNCC	2 cut(s)	492, 517
BmrFI	CCNGG	4 cut(s)	488, 489, 495, 612
BmrI	ACTGGG	1 cut(s)	384
BmuI	ACTGGG	1 cut(s)	384
BpiI	GAAGAC	3 cut(s)	332, 418, 455
BpuMI	CCSGG	2 cut(s)	488, 489
BsaBI	GATNNNNATC	1 cut(s)	561
BsaJI	CCNNGG	1 cut(s)	487
BsaWI	WCCGGW	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 286, 374, 494
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	379
Bse8I	GATNNNNATC	1 cut(s)	561
BseBI	CCWGG	2 cut(s)	495, 612
BseDI	CCNNGG	1 cut(s)	487
BseGI	GGATG	1 cut(s)	562
BseJI	GATNNNNATC	1 cut(s)	561
BseLI	CCNNNNNNNGG	4 cut(s)	40, 286, 374, 494
BseMII	CTCAG	2 cut(s)	107, 384
BseNI	ACTGG	1 cut(s)	379
BseSI	GKGCMC	1 cut(s)	520
BseXI	GCAGC	2 cut(s)	64, 84
BshFI	GGCC	1 cut(s)	26
BshNI	GGYRCC	1 cut(s)	515
BsiHKAI	GWGCWC	1 cut(s)	575
BsiHKCI	CYCGRG	1 cut(s)	487
BsiSI	CCGG	3 cut(s)	141, 336, 488
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	4 cut(s)	40, 286, 374, 494
BsmFI	GGGAC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	26
BsoBI	CYCGRG	1 cut(s)	487
Bsp1286I	GDGCHC	3 cut(s)	449, 520, 575
Bsp1407I	TGTACA	1 cut(s)	57
Bsp143I	GATC	4 cut(s)	46, 177, 200, 403
BspANI	GGCC	1 cut(s)	26
BspCNI	CTCAG	2 cut(s)	106, 385
BspLI	GGNNCC	2 cut(s)	492, 517
BspMAI	CTGCAG	1 cut(s)	74
BspPI	GGATC	3 cut(s)	54, 185, 208
BspQI	GCTCTTC	1 cut(s)	258
BspT107I	GGYRCC	1 cut(s)	515
BsrFI	RCCGGY	1 cut(s)	140
BsrGI	TGTACA	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	379
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	487
BssMI	GATC	4 cut(s)	46, 177, 200, 403
Bst2UI	CCWGG	2 cut(s)	495, 612
Bst4CI	ACNGT	1 cut(s)	312
Bst6I	CTCTTC	3 cut(s)	5, 258, 589
BstAUI	TGTACA	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	600
BstDEI	CTNAG	2 cut(s)	93, 393
BstENI	CCTNNNNNAGG	1 cut(s)	38
BstF5I	GGATG	1 cut(s)	562
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	4 cut(s)	49, 180, 203, 406
BstMBI	GATC	4 cut(s)	46, 177, 200, 403
BstMWI	GCNNNNNNNGC	2 cut(s)	301, 453
BstNI	CCWGG	2 cut(s)	495, 612
BstNSI	RCATGY	3 cut(s)	58, 598, 602
BstSCI	CCNGG	4 cut(s)	486, 487, 493, 610
BstSFI	CTRYAG	2 cut(s)	70, 181
BstSLI	GKGCMC	1 cut(s)	520
BstV1I	GCAGC	2 cut(s)	64, 84
BstV2I	GAAGAC	3 cut(s)	332, 418, 455
BstX2I	RGATCY	2 cut(s)	177, 200
BstYI	RGATCY	2 cut(s)	177, 200
BsuRI	GGCC	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	562
BtsI	GCAGTG	2 cut(s)	297, 404
BtsIMutI	CAGTG	3 cut(s)	179, 297, 404
Cac8I	GCNNGC	1 cut(s)	600
CfoI	GCGC	1 cut(s)	77
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	491
Cfr9I	CCCGGG	1 cut(s)	487
Csp6I	GTAC	2 cut(s)	58, 372
CspCI	CAANNNNNGTGG	2 cut(s)	16, 51
CviAII	CATG	5 cut(s)	55, 112, 152, 595, 599
CviQI	GTAC	2 cut(s)	58, 372
DdeI	CTNAG	2 cut(s)	93, 393
DpnI	GATC	4 cut(s)	48, 179, 202, 405
DpnII	GATC	4 cut(s)	46, 177, 200, 403
EaeI	YGGCCR	1 cut(s)	24
Eam1104I	CTCTTC	3 cut(s)	5, 258, 589
EarI	CTCTTC	3 cut(s)	5, 258, 589
Ecl136II	GAGCTC	1 cut(s)	573
Eco24I	GRGCYC	2 cut(s)	449, 575
Eco47I	GGWCC	1 cut(s)	491
Eco47III	AGCGCT	1 cut(s)	76
Eco53kI	GAGCTC	1 cut(s)	573
Eco57I	CTGAAG	2 cut(s)	221, 449
Eco88I	CYCGRG	1 cut(s)	487
EcoICRI	GAGCTC	1 cut(s)	573
EcoNI	CCTNNNNNAGG	1 cut(s)	38
EcoO109I	RGGNCCY	1 cut(s)	491
EcoRI	GAATTC	2 cut(s)	384, 418
EcoRII	CCWGG	2 cut(s)	493, 610
EcoT22I	ATGCAT	1 cut(s)	600
EcoT38I	GRGCYC	2 cut(s)	449, 575
FaeI	CATG	5 cut(s)	58, 115, 155, 598, 602
FaiI	YATR	7 cut(s)	56, 113, 153, 224, 306, 596, 600
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	5 cut(s)	54, 111, 151, 594, 598
FbaI	TGATCA	1 cut(s)	403
FblI	GTMKAC	1 cut(s)	184
Fnu4HI	GCNGC	2 cut(s)	73, 78
FokI	GGATG	1 cut(s)	569
FriOI	GRGCYC	2 cut(s)	449, 575
Fsp4HI	GCNGC	2 cut(s)	73, 78
FspBI	CTAG	2 cut(s)	204, 282
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	2 cut(s)	73, 78
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	26
HapII	CCGG	3 cut(s)	141, 336, 488
HhaI	GCGC	1 cut(s)	77
Hin1II	CATG	5 cut(s)	58, 115, 155, 598, 602
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	2 cut(s)	460, 581
HpaII	CCGG	3 cut(s)	141, 336, 488
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	3 cut(s)	60, 146, 185
Hpy188I	TCNGA	3 cut(s)	240, 394, 570
Hpy188III	TCNNGA	2 cut(s)	204, 507
Hpy8I	GTNNAC	3 cut(s)	60, 146, 185
HpyAV	CCTTC	4 cut(s)	76, 142, 188, 245
HpyCH4III	ACNGT	1 cut(s)	312
HpyCH4V	TGCA	6 cut(s)	72, 212, 295, 322, 598, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	301, 453
HpyF3I	CTNAG	2 cut(s)	93, 393
Hsp92II	CATG	5 cut(s)	58, 115, 155, 598, 602
HspAI	GCGC	1 cut(s)	75
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	4 cut(s)	46, 177, 200, 403
LguI	GCTCTTC	1 cut(s)	258
LmnI	GCTCC	1 cut(s)	578
Lsp1109I	GCAGC	2 cut(s)	64, 84
MaeI	CTAG	2 cut(s)	204, 282
MaeIII	GTNAC	1 cut(s)	614
MalI	GATC	4 cut(s)	48, 179, 202, 405
MboI	GATC	4 cut(s)	46, 177, 200, 403
MboII	GAAGA	9 cut(s)	19, 22, 275, 332, 342, 418, 455, 533, 576
MflI	RGATCY	2 cut(s)	177, 200
MhlI	GDGCHC	3 cut(s)	449, 520, 575
MlsI	TGGCCA	1 cut(s)	26
MluCI	AATT	5 cut(s)	82, 165, 331, 384, 418
MluNI	TGGCCA	1 cut(s)	26
MlyI	GAGTC	2 cut(s)	469, 575
MmeI	TCCRAC	2 cut(s)	228, 600
MnlI	CCTC	6 cut(s)	34, 73, 98, 167, 325, 576
Mox20I	TGGCCA	1 cut(s)	26
Mph1103I	ATGCAT	1 cut(s)	600
MroXI	GAANNNNTTC	1 cut(s)	388
MscI	TGGCCA	1 cut(s)	26
MseI	TTAA	1 cut(s)	561
Msp20I	TGGCCA	1 cut(s)	26
MspI	CCGG	3 cut(s)	141, 336, 488
MspR9I	CCNGG	4 cut(s)	488, 489, 495, 612
MvaI	CCWGG	2 cut(s)	495, 612
MwoI	GCNNNNNNNGC	2 cut(s)	301, 453
NciI	CCSGG	2 cut(s)	488, 489
NdeII	GATC	4 cut(s)	46, 177, 200, 403
NlaIII	CATG	5 cut(s)	58, 115, 155, 598, 602
NlaIV	GGNNCC	2 cut(s)	492, 517
NmuCI	GTSAC	1 cut(s)	614
NsiI	ATGCAT	1 cut(s)	600
NspI	RCATGY	3 cut(s)	58, 598, 602
PaeI	GCATGC	1 cut(s)	602
PciSI	GCTCTTC	1 cut(s)	258
PdmI	GAANNNNTTC	1 cut(s)	388
PflMI	CCANNNNNTGG	1 cut(s)	374
PkrI	GCNGC	2 cut(s)	74, 79
PleI	GAGTC	2 cut(s)	468, 575
PpsI	GAGTC	2 cut(s)	468, 575
PpuMI	RGGWCCY	1 cut(s)	491
Psp124BI	GAGCTC	1 cut(s)	575
Psp5II	RGGWCCY	1 cut(s)	491
Psp6I	CCWGG	2 cut(s)	493, 610
PspGI	CCWGG	2 cut(s)	493, 610
PspN4I	GGNNCC	2 cut(s)	492, 517
PspPI	GGNCC	1 cut(s)	491
PspPPI	RGGWCCY	1 cut(s)	491
PstI	CTGCAG	1 cut(s)	74
PsuI	RGATCY	2 cut(s)	177, 200
RsaI	GTAC	2 cut(s)	59, 373
RsaNI	GTAC	2 cut(s)	58, 372
SacI	GAGCTC	1 cut(s)	575
SapI	GCTCTTC	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	2 cut(s)	73, 78
Sau3AI	GATC	4 cut(s)	46, 177, 200, 403
Sau96I	GGNCC	1 cut(s)	491
ScaI	AGTACT	1 cut(s)	373
SchI	GAGTC	2 cut(s)	469, 575
ScrFI	CCNGG	4 cut(s)	488, 489, 495, 612
SduI	GDGCHC	3 cut(s)	449, 520, 575
SetI	ASST	7 cut(s)	45, 65, 99, 129, 237, 535, 575
SfcI	CTRYAG	2 cut(s)	70, 181
SinI	GGWCC	1 cut(s)	491
SmaI	CCCGGG	1 cut(s)	489
SphI	GCATGC	1 cut(s)	602
Sse9I	AATT	5 cut(s)	82, 165, 331, 384, 418
SspMI	CTAG	2 cut(s)	204, 282
SstI	GAGCTC	1 cut(s)	575
StyD4I	CCNGG	4 cut(s)	486, 487, 493, 610
TaaI	ACNGT	1 cut(s)	312
TaqI	TCGA	4 cut(s)	49, 159, 443, 587
TasI	AATT	5 cut(s)	82, 165, 331, 384, 418
TatI	WGTACW	2 cut(s)	57, 371
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	3 cut(s)	179, 297, 404
TseFI	GTSAC	1 cut(s)	614
TseI	GCWGC	2 cut(s)	72, 77
Tsp45I	GTSAC	1 cut(s)	614
TspDTI	ATGAA	2 cut(s)	128, 543
TspMI	CCCGGG	1 cut(s)	487
TspRI	CASTG	3 cut(s)	179, 297, 404
Van91I	CCANNNNNTGG	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	491
XagI	CCTNNNNNAGG	1 cut(s)	38
XapI	RAATTY	4 cut(s)	165, 331, 384, 418
XbaI	TCTAGA	1 cut(s)	203
XceI	RCATGY	3 cut(s)	58, 598, 602
XmaI	CCCGGG	1 cut(s)	487
XmiI	GTMKAC	1 cut(s)	184
XmnI	GAANNNNTTC	1 cut(s)	388
XspI	CTAG	2 cut(s)	204, 282
ZrmI	AGTACT	1 cut(s)	373
Zsp2I	ATGCAT	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.