Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002859

Physical Location & Seq

Genomic Coordinates Reverse (-)

15835477 .. 15835892

Gene Structure 416 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017373

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGAGGGCAAAAGAGAACAGAGCAAGCCGAAGAGGCATCCGGAGGCGGCCTTGGGGAAAGTTGCAGCAGAAATTCGGGACCCTACAAGAAACGGGGTCCGTCGTTGGTTAGGTACATTTGACACAGCTGAACAGGCAGCAAGGGCTTATGATCGAGCTGCTTTTGGTTTCCGGGGTCGTTTAGCCATCCTCAACTTCCCAAATGAGAGCCAACACCACAATTCATCAACAAGCTCTTTTGTCACATCAACTTCGCCACCCTCATCGTCTTCCTTTTCATCTGCTGCTGCTAACATTGAAAAAAAAGTTGGAAACGAAGAAAGTGGAGTTATAGAGTTTGAGTATTTAGACAATATGATCTTGGAGGAGCTTCTTGCAACACAAGAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

131

Amino Acids

14.32

Weight (kDa)

5.93

Isoelectric Point (pI)

72.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	23 - 59	5.3e-06	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002859)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21560 FvH4_2g21561
malus_domestica	MD05G1198800.v1.1 MD10G1185000.v1.1
prunus_persica	Prupe.8G224700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0288241 RchiOBHm_Chr6g0288251 RchiOBHm_Chr6g0288261
rosa_laevigata	RLG00000012420 RLG00000012421 RLG00000012422 RLG00000017373 RLG00000017374
rosa_multiflora	Rmu_co8125528.1_g000001 Rmu_co8198010.1_g000001 Rmu_co8388259.1_g000001 Rmu_sc0001038.1_g000001 Rmu_sc0004300.1_g000010 Rmu_sc0028578.1_g000001 Rmu_sc0028578.1_g000002 Rmu_sc0042461.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180280 Rroxscaffold_7G00180290 Rroxscaffold_7G00180310
rosa_rugosa	Rorug06G0195000 Rorug06G0195100 Rorug06G0195200
rosa_samantha	Rh6AG306000 Rh6AG306100 Rh6AG306200 Rh6BG311600 Rh6BG311700 Rh6BG311800 Rh6CG319600 Rh6CG319700 Rh6DG304900 Rh6DG305000
rosa_wichuraiana	Rw6G026460 Rw6G026470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	40
AciI	CCGC	1 cut(s)	47
AcsI	RAATTY	1 cut(s)	72
AfaI	GTAC	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	299
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
AluBI	AGCT	4 cut(s)	128, 158, 234, 370
AluI	AGCT	4 cut(s)	128, 158, 234, 370
Aor13HI	TCCGGA	1 cut(s)	40
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	5 cut(s)	65, 137, 158, 284, 287
ApoI	RAATTY	1 cut(s)	72
AspS9I	GGNCC	2 cut(s)	79, 97
AsuC2I	CCSGG	1 cut(s)	173
AvaII	GGWCC	2 cut(s)	79, 97
BbsI	GAAGAC	1 cut(s)	261
BbvI	GCAGC	5 cut(s)	77, 145, 149, 271, 274
BccI	CCATC	1 cut(s)	194
BcnI	CCSGG	1 cut(s)	173
BglI	GCCNNNNNGGC	1 cut(s)	34
BisI	GCNGC	6 cut(s)	48, 66, 138, 159, 285, 288
BlsI	GCNGC	6 cut(s)	49, 67, 139, 160, 286, 289
Bme1390I	CCNGG	1 cut(s)	173
Bme18I	GGWCC	2 cut(s)	79, 97
BmgT120I	GGNCC	2 cut(s)	79, 97
BmiI	GGNNCC	3 cut(s)	80, 81, 98
BmrFI	CCNGG	1 cut(s)	173
BmsI	GCATC	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	173
BsaJI	CCNNGG	2 cut(s)	51, 172
BsaWI	WCCGGW	1 cut(s)	40
BseAI	TCCGGA	1 cut(s)	40
BseDI	CCNNGG	2 cut(s)	51, 172
BseGI	GGATG	2 cut(s)	37, 186
BseRI	GAGGAG	1 cut(s)	380
BseXI	GCAGC	5 cut(s)	77, 145, 149, 271, 274
BshFI	GGCC	1 cut(s)	50
BsiSI	CCGG	2 cut(s)	41, 172
BslFI	GGGAC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	92
BsnI	GGCC	1 cut(s)	50
Bsp13I	TCCGGA	1 cut(s)	40
Bsp143I	GATC	2 cut(s)	151, 357
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	1 cut(s)	50
BspEI	TCCGGA	1 cut(s)	40
BspLI	GGNNCC	3 cut(s)	80, 81, 98
BssECI	CCNNGG	2 cut(s)	51, 172
BssMI	GATC	2 cut(s)	151, 357
BssT1I	CCWWGG	1 cut(s)	51
Bst6I	CTCTTC	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	26
BstF5I	GGATG	2 cut(s)	37, 186
BstKTI	GATC	2 cut(s)	154, 360
BstMBI	GATC	2 cut(s)	151, 357
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 134, 143
BstSCI	CCNGG	1 cut(s)	171
BstV1I	GCAGC	5 cut(s)	77, 145, 149, 271, 274
BstV2I	GAAGAC	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	50
BtsCI	GGATG	2 cut(s)	37, 186
Cac8I	GCNNGC	1 cut(s)	26
Cfr13I	GGNCC	2 cut(s)	79, 97
Csp6I	GTAC	1 cut(s)	114
CviJI	RGCY	9 cut(s)	28, 50, 128, 146, 158, 185, 210, 234, 370
CviKI_1	RGCY	9 cut(s)	28, 50, 128, 146, 158, 185, 210, 234, 370
CviQI	GTAC	1 cut(s)	114
DpnI	GATC	2 cut(s)	153, 359
DpnII	GATC	2 cut(s)	151, 357
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	51
Eco47I	GGWCC	2 cut(s)	79, 97
EcoO109I	RGGNCCY	1 cut(s)	79
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
FaiI	YATR	3 cut(s)	150, 332, 356
FaqI	GGGAC	1 cut(s)	92
Fnu4HI	GCNGC	6 cut(s)	48, 66, 138, 159, 285, 288
FokI	GGATG	2 cut(s)	24, 173
Fsp4HI	GCNGC	6 cut(s)	48, 66, 138, 159, 285, 288
GluI	GCNGC	6 cut(s)	48, 66, 138, 159, 285, 288
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	2 cut(s)	41, 172
HpaII	CCGG	2 cut(s)	41, 172
Hpy188III	TCNNGA	2 cut(s)	41, 77
Hpy99I	CGWCG	1 cut(s)	105
HpyCH4V	TGCA	2 cut(s)	65, 377
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 134, 143
KflI	GGGWCCC	1 cut(s)	79
Kpn2I	TCCGGA	1 cut(s)	40
Kzo9I	GATC	2 cut(s)	151, 357
LmnI	GCTCC	1 cut(s)	367
LpnPI	CCDG	3 cut(s)	54, 119, 185
Lsp1109I	GCAGC	5 cut(s)	77, 145, 149, 271, 274
LweI	GCATC	1 cut(s)	46
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	2 cut(s)	153, 359
MboI	GATC	2 cut(s)	151, 357
MboII	GAAGA	3 cut(s)	43, 261, 329
MluCI	AATT	2 cut(s)	72, 220
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	5 cut(s)	27, 37, 200, 271, 358
MroI	TCCGGA	1 cut(s)	40
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	2 cut(s)	41, 172
MspR9I	CCNGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	3 cut(s)	34, 134, 143
NciI	CCSGG	1 cut(s)	173
NdeII	GATC	2 cut(s)	151, 357
NlaIV	GGNNCC	3 cut(s)	80, 81, 98
NmuCI	GTSAC	1 cut(s)	241
PkrI	GCNGC	6 cut(s)	49, 67, 139, 160, 286, 289
PpuMI	RGGWCCY	1 cut(s)	79
Psp5II	RGGWCCY	1 cut(s)	79
PspN4I	GGNNCC	3 cut(s)	80, 81, 98
PspPI	GGNCC	2 cut(s)	79, 97
PspPPI	RGGWCCY	1 cut(s)	79
PvuII	CAGCTG	1 cut(s)	128
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SatI	GCNGC	6 cut(s)	48, 66, 138, 159, 285, 288
Sau3AI	GATC	2 cut(s)	151, 357
Sau96I	GGNCC	2 cut(s)	79, 97
ScrFI	CCNGG	1 cut(s)	173
SetI	ASST	5 cut(s)	115, 130, 160, 236, 372
SfaNI	GCATC	1 cut(s)	46
SinI	GGWCC	2 cut(s)	79, 97
Sse9I	AATT	2 cut(s)	72, 220
SsiI	CCGC	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	51
TaqI	TCGA	1 cut(s)	154
TasI	AATT	2 cut(s)	72, 220
TauI	GCSGC	1 cut(s)	50
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	5 cut(s)	65, 137, 158, 284, 287
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	2 cut(s)	213, 267
TspGWI	ACGGA	1 cut(s)	89
VpaK11BI	GGWCC	2 cut(s)	79, 97
XapI	RAATTY	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.