Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002859

Physical Location & Seq

Genomic Coordinates Reverse (-)

18631448 .. 18631900

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012422

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAGGGGGAGAGAGCAGAGAGTAATGAGCGGAAGAGTAAGCAGCCCATCAAGGTGAGAGATCAGACCCGGTACAGAGGGATTCGGAGAAGGCCGTGGGGGAAGTATGCGGCAGAGATTCGAGACCCTTCGAGGAATGGGGCACGTCTATGGCTAGGTACGTTTGAGACAGCGGAAGAGGCAGCAAGGGCTTATGATCGAGCTGCTTTTGGCTTTCGGGGTCATTTGGCCATCCTCAACTTCCCGAATGAGTACCAATATCACAATCCATCAACCAGCTCTTTCGTTACATCAAATTCTGTTTCTTCTTCATCATCAACATCATCTAATTCATTTGCTTCTGCTCCTGCTGATGGTGGAATGGATTTTGGAAATAAAGAAGGTCCAGTGATAGAGTTTGAGTATCTGGACAATATGGTGTTGGAGAAGCTTCTTGAAGAGCAAAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

151

Amino Acids

16.95

Weight (kDa)

7.95

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	23 - 74	8e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002859)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21560 FvH4_2g21561
malus_domestica	MD05G1198800.v1.1 MD10G1185000.v1.1
prunus_persica	Prupe.8G224700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0288241 RchiOBHm_Chr6g0288251 RchiOBHm_Chr6g0288261
rosa_laevigata	RLG00000012420 RLG00000012421 RLG00000012422 RLG00000017373 RLG00000017374
rosa_multiflora	Rmu_co8125528.1_g000001 Rmu_co8198010.1_g000001 Rmu_co8388259.1_g000001 Rmu_sc0001038.1_g000001 Rmu_sc0004300.1_g000010 Rmu_sc0028578.1_g000001 Rmu_sc0028578.1_g000002 Rmu_sc0042461.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180280 Rroxscaffold_7G00180290 Rroxscaffold_7G00180310
rosa_rugosa	Rorug06G0195000 Rorug06G0195100 Rorug06G0195200
rosa_samantha	Rh6AG306000 Rh6AG306100 Rh6AG306200 Rh6BG311600 Rh6BG311700 Rh6BG311800 Rh6CG319600 Rh6CG319700 Rh6DG304900 Rh6DG305000
rosa_wichuraiana	Rw6G026460 Rw6G026470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	31
AciI	CCGC	3 cut(s)	31, 110, 173
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	295
AfaI	GTAC	3 cut(s)	74, 160, 254
AfiI	CCNNNNNNNGG	1 cut(s)	353
AgsI	TTSAA	1 cut(s)	437
AjiI	CACGTC	1 cut(s)	146
AluBI	AGCT	3 cut(s)	203, 279, 430
AluI	AGCT	3 cut(s)	203, 279, 430
Alw26I	GTCTC	2 cut(s)	117, 161
AoxI	GGCC	2 cut(s)	92, 228
ApeKI	GCWGC	3 cut(s)	43, 182, 203
ApoI	RAATTY	1 cut(s)	295
AspS9I	GGNCC	1 cut(s)	383
AsuC2I	CCSGG	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	383
BaeGI	GKGCMC	1 cut(s)	145
BalI	TGGCCA	1 cut(s)	230
BbvI	GCAGC	3 cut(s)	55, 190, 194
BccI	CCATC	4 cut(s)	56, 239, 277, 347
BceAI	ACGGC	1 cut(s)	79
BcnI	CCSGG	1 cut(s)	70
BcoDI	GTCTC	2 cut(s)	117, 161
BfaI	CTAG	1 cut(s)	155
BisI	GCNGC	4 cut(s)	44, 111, 183, 204
BlsI	GCNGC	4 cut(s)	45, 112, 184, 205
Bme1390I	CCNGG	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	383
BmgBI	CACGTC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	383
BmrFI	CCNGG	1 cut(s)	70
BpuMI	CCSGG	1 cut(s)	70
BsaI	GGTCTC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse1I	ACTGG	1 cut(s)	386
BseDI	CCNNGG	1 cut(s)	95
BseGI	GGATG	1 cut(s)	231
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseNI	ACTGG	1 cut(s)	386
BseSI	GKGCMC	1 cut(s)	145
BseXI	GCAGC	3 cut(s)	55, 190, 194
BshFI	GGCC	2 cut(s)	94, 230
BsiSI	CCGG	1 cut(s)	70
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmAI	GTCTC	2 cut(s)	117, 161
BsnI	GGCC	2 cut(s)	94, 230
Bso31I	GGTCTC	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	2 cut(s)	61, 196
BspACI	CCGC	3 cut(s)	31, 110, 173
BspANI	GGCC	2 cut(s)	94, 230
BspQI	GCTCTTC	1 cut(s)	432
BspTNI	GGTCTC	1 cut(s)	117
BsrBI	CCGCTC	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	386
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	2 cut(s)	61, 196
Bst6I	CTCTTC	3 cut(s)	29, 171, 432
BstDSI	CCRYGG	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	231
BstKTI	GATC	2 cut(s)	64, 199
BstMAI	GTCTC	2 cut(s)	117, 161
BstMBI	GATC	2 cut(s)	61, 196
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 188
BstSCI	CCNGG	1 cut(s)	68
BstSLI	GKGCMC	1 cut(s)	145
BstV1I	GCAGC	3 cut(s)	55, 190, 194
BsuRI	GGCC	2 cut(s)	94, 230
BtgI	CCRYGG	1 cut(s)	95
BtrI	CACGTC	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	393
Cfr13I	GGNCC	1 cut(s)	383
Csp6I	GTAC	3 cut(s)	73, 159, 253
CviJI	RGCY	9 cut(s)	46, 94, 154, 191, 203, 213, 230, 279, 430
CviKI_1	RGCY	9 cut(s)	46, 94, 154, 191, 203, 213, 230, 279, 430
CviQI	GTAC	3 cut(s)	73, 159, 253
DpnI	GATC	2 cut(s)	63, 198
DpnII	GATC	2 cut(s)	61, 196
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	3 cut(s)	29, 171, 432
EarI	CTCTTC	3 cut(s)	29, 171, 432
Eco31I	GGTCTC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	383
FaiI	YATR	4 cut(s)	108, 151, 195, 416
Fnu4HI	GCNGC	4 cut(s)	44, 111, 183, 204
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	4 cut(s)	44, 111, 183, 204
FspBI	CTAG	1 cut(s)	155
GluI	GCNGC	4 cut(s)	44, 111, 183, 204
HaeIII	GGCC	2 cut(s)	94, 230
HapII	CCGG	1 cut(s)	70
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	2 cut(s)	82, 118
HpaII	CCGG	1 cut(s)	70
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	2 cut(s)	66, 87
Hpy188III	TCNNGA	4 cut(s)	122, 244, 407, 434
HpyAV	CCTTC	3 cut(s)	84, 138, 374
HpyCH4IV	ACGT	2 cut(s)	145, 161
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 188
HpySE526I	ACGT	2 cut(s)	145, 161
Kzo9I	GATC	2 cut(s)	61, 196
LguI	GCTCTTC	1 cut(s)	432
LmnI	GCTCC	1 cut(s)	349
LpnPI	CCDG	5 cut(s)	83, 289, 360, 392, 399
Lsp1109I	GCAGC	3 cut(s)	55, 190, 194
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	2 cut(s)	145, 161
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	2 cut(s)	63, 198
MbiI	CCGCTC	1 cut(s)	31
MboI	GATC	2 cut(s)	61, 196
MboII	GAAGA	5 cut(s)	46, 188, 297, 300, 449
MhlI	GDGCHC	1 cut(s)	145
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	2 cut(s)	295, 328
MluNI	TGGCCA	1 cut(s)	230
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	4 cut(s)	71, 126, 172, 245
Mox20I	TGGCCA	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	230
MslI	CAYNNNNRTG	2 cut(s)	53, 148
Msp20I	TGGCCA	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	1 cut(s)	70
MspR9I	CCNGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	2 cut(s)	179, 188
NciI	CCSGG	1 cut(s)	70
NdeII	GATC	2 cut(s)	61, 196
PciSI	GCTCTTC	1 cut(s)	432
PfeI	GAWTC	2 cut(s)	82, 118
PkrI	GCNGC	4 cut(s)	45, 112, 184, 205
PspPI	GGNCC	1 cut(s)	383
RsaI	GTAC	3 cut(s)	74, 160, 254
RsaNI	GTAC	3 cut(s)	73, 159, 253
RseI	CAYNNNNRTG	2 cut(s)	53, 148
SapI	GCTCTTC	1 cut(s)	432
SatI	GCNGC	4 cut(s)	44, 111, 183, 204
Sau3AI	GATC	2 cut(s)	61, 196
Sau96I	GGNCC	1 cut(s)	383
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	1 cut(s)	145
SetI	ASST	8 cut(s)	57, 148, 160, 164, 205, 281, 385, 432
SinI	GGWCC	1 cut(s)	383
SmiMI	CAYNNNNRTG	2 cut(s)	53, 148
Sse9I	AATT	2 cut(s)	295, 328
SsiI	CCGC	3 cut(s)	31, 110, 173
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	68
TaiI	ACGT	2 cut(s)	148, 164
TaqI	TCGA	3 cut(s)	121, 131, 199
TasI	AATT	2 cut(s)	295, 328
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	2 cut(s)	82, 118
TscAI	CASTG	1 cut(s)	393
TseI	GCWGC	3 cut(s)	43, 182, 203
TspDTI	ATGAA	2 cut(s)	300, 321
TspRI	CASTG	1 cut(s)	393
VpaK11BI	GGWCC	1 cut(s)	383
XapI	RAATTY	1 cut(s)	295
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.