Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002859

Physical Location & Seq

Genomic Coordinates Forward (+)

50447209 .. 50448172

Gene Structure 964 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG306100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGAGGGGAAGAGAGAGGAGAACAAGCCGAAGGTAAGAGACCAATCCCGGTACAGAGGAACTCGAAGGAGGCCATGGGGCAGGTATGCAGCAGAAATTCGAGACCCTACGAGAAATGGGGCACGTCTATGGTTAGGTACATTTGACACGGCCGAACAGGCAGCAAGGGCTTATGATCGAGCTGCTTTTCGTCTTCGAGGGAATTTAGCTATCCTCAACTTCCCAAATGAATACCAATACCATAACTCATCAACCAGCTCTTTCGTCCCATCAGATTCCACTTCTTCATCAGCTGCCATTTCTTCTGCTGCTGCTGATGACAATGGGAAGCCTTTCTGCAAACAAGAAAGTGAAGTTATTGTGTTCGAGTATTTGGACAATATGATCTTGGAGGAGCTTCTTGCAGTTAAAGAAGATACACATGGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

143

Amino Acids

16.22

Weight (kDa)

6.75

Isoelectric Point (pI)

51.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	16 - 68	1.4e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002859)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21560 FvH4_2g21561
malus_domestica	MD05G1198800.v1.1 MD10G1185000.v1.1
prunus_persica	Prupe.8G224700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0288241 RchiOBHm_Chr6g0288251 RchiOBHm_Chr6g0288261
rosa_laevigata	RLG00000012420 RLG00000012421 RLG00000012422 RLG00000017373 RLG00000017374
rosa_multiflora	Rmu_co8125528.1_g000001 Rmu_co8198010.1_g000001 Rmu_co8388259.1_g000001 Rmu_sc0001038.1_g000001 Rmu_sc0004300.1_g000010 Rmu_sc0028578.1_g000001 Rmu_sc0028578.1_g000002 Rmu_sc0042461.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180280 Rroxscaffold_7G00180290 Rroxscaffold_7G00180310
rosa_rugosa	Rorug06G0195000 Rorug06G0195100 Rorug06G0195200
rosa_samantha	Rh6AG306000 Rh6AG306100 Rh6AG306200 Rh6BG311600 Rh6BG311700 Rh6BG311800 Rh6CG319600 Rh6CG319700 Rh6DG304900 Rh6DG305000
rosa_wichuraiana	Rw6G026460 Rw6G026470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	72
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	2 cut(s)	96, 202
AfaI	GTAC	2 cut(s)	53, 139
AjiI	CACGTC	1 cut(s)	125
AluBI	AGCT	5 cut(s)	182, 209, 258, 293, 397
AluI	AGCT	5 cut(s)	182, 209, 258, 293, 397
Alw26I	GTCTC	2 cut(s)	33, 96
AoxI	GGCC	2 cut(s)	71, 150
ApeKI	GCWGC	6 cut(s)	89, 161, 182, 293, 308, 311
ApoI	RAATTY	2 cut(s)	96, 202
Asp700I	GAANNNNTTC	1 cut(s)	332
AsuC2I	CCSGG	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	124
BbsI	GAAGAC	1 cut(s)	185
BbvI	GCAGC	6 cut(s)	101, 169, 173, 280, 295, 298
BccI	CCATC	1 cut(s)	277
BceAI	ACGGC	1 cut(s)	165
BcnI	CCSGG	1 cut(s)	49
BcoDI	GTCTC	2 cut(s)	33, 96
BfuAI	ACCTGC	1 cut(s)	72
BglI	GCCNNNNNGGC	1 cut(s)	158
BisI	GCNGC	6 cut(s)	90, 162, 183, 294, 309, 312
BlsI	GCNGC	6 cut(s)	91, 163, 184, 295, 310, 313
Bme1390I	CCNGG	1 cut(s)	49
BmgBI	CACGTC	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	49
BpiI	GAAGAC	1 cut(s)	185
BpuMI	CCSGG	1 cut(s)	49
BsaI	GGTCTC	2 cut(s)	33, 96
BsaJI	CCNNGG	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	74
BseRI	GAGGAG	2 cut(s)	32, 407
BseSI	GKGCMC	1 cut(s)	124
BseX3I	CGGCCG	1 cut(s)	150
BseXI	GCAGC	6 cut(s)	101, 169, 173, 280, 295, 298
Bsh1285I	CGRYCG	1 cut(s)	153
BshFI	GGCC	2 cut(s)	73, 152
BsiEI	CGRYCG	1 cut(s)	153
BsiSI	CCGG	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	251
BsmAI	GTCTC	2 cut(s)	33, 96
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	2 cut(s)	73, 152
Bso31I	GGTCTC	2 cut(s)	33, 96
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	2 cut(s)	175, 384
Bsp19I	CCATGG	1 cut(s)	74
BspANI	GGCC	2 cut(s)	73, 152
BspMI	ACCTGC	1 cut(s)	72
BspTNI	GGTCTC	2 cut(s)	33, 96
BssECI	CCNNGG	1 cut(s)	74
BssMI	GATC	2 cut(s)	175, 384
BssT1I	CCWWGG	1 cut(s)	74
Bst6I	CTCTTC	1 cut(s)	5
BstDSI	CCRYGG	1 cut(s)	74
BstKTI	GATC	2 cut(s)	178, 387
BstMAI	GTCTC	2 cut(s)	33, 96
BstMBI	GATC	2 cut(s)	175, 384
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 167
BstSCI	CCNGG	1 cut(s)	47
BstSLI	GKGCMC	1 cut(s)	124
BstV1I	GCAGC	6 cut(s)	101, 169, 173, 280, 295, 298
BstV2I	GAAGAC	1 cut(s)	185
BstZI	CGGCCG	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	73, 152
BtgI	CCRYGG	1 cut(s)	74
BtrI	CACGTC	1 cut(s)	125
BveI	ACCTGC	1 cut(s)	72
Csp6I	GTAC	2 cut(s)	52, 138
CviAII	CATG	2 cut(s)	75, 422
CviQI	GTAC	2 cut(s)	52, 138
DpnI	GATC	2 cut(s)	177, 386
DpnII	GATC	2 cut(s)	175, 384
EaeI	YGGCCR	1 cut(s)	150
EagI	CGGCCG	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
EclXI	CGGCCG	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	74
Eco31I	GGTCTC	2 cut(s)	33, 96
Eco52I	CGGCCG	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	2 cut(s)	78, 425
FaiI	YATR	7 cut(s)	76, 87, 130, 174, 243, 383, 423
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	2 cut(s)	74, 421
Fnu4HI	GCNGC	6 cut(s)	90, 162, 183, 294, 309, 312
Fsp4HI	GCNGC	6 cut(s)	90, 162, 183, 294, 309, 312
GluI	GCNGC	6 cut(s)	90, 162, 183, 294, 309, 312
HaeIII	GGCC	2 cut(s)	73, 152
HapII	CCGG	1 cut(s)	49
Hin1II	CATG	2 cut(s)	78, 425
HinfI	GANTC	1 cut(s)	275
HpaII	CCGG	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	1 cut(s)	101
HpyAV	CCTTC	2 cut(s)	25, 60
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	3 cut(s)	89, 339, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 167
HpySE526I	ACGT	1 cut(s)	124
Hsp92II	CATG	2 cut(s)	78, 425
Kzo9I	GATC	2 cut(s)	175, 384
LmnI	GCTCC	1 cut(s)	394
LpnPI	CCDG	4 cut(s)	62, 67, 143, 268
Lsp1109I	GCAGC	6 cut(s)	101, 169, 173, 280, 295, 298
MaeII	ACGT	1 cut(s)	124
MalI	GATC	2 cut(s)	177, 386
MboI	GATC	2 cut(s)	175, 384
MboII	GAAGA	5 cut(s)	22, 185, 276, 294, 425
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	2 cut(s)	96, 202
MnlI	CCTC	6 cut(s)	10, 50, 63, 191, 224, 385
MroXI	GAANNNNTTC	1 cut(s)	332
MseI	TTAA	1 cut(s)	408
MslI	CAYNNNNRTG	1 cut(s)	127
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	1 cut(s)	49
MspR9I	CCNGG	1 cut(s)	49
MwoI	GCNNNNNNNGC	2 cut(s)	158, 167
NciI	CCSGG	1 cut(s)	49
NcoI	CCATGG	1 cut(s)	74
NdeII	GATC	2 cut(s)	175, 384
NlaIII	CATG	2 cut(s)	78, 425
PdmI	GAANNNNTTC	1 cut(s)	332
PfeI	GAWTC	1 cut(s)	275
PkrI	GCNGC	6 cut(s)	91, 163, 184, 295, 310, 313
PvuII	CAGCTG	1 cut(s)	293
RsaI	GTAC	2 cut(s)	53, 139
RsaNI	GTAC	2 cut(s)	52, 138
RseI	CAYNNNNRTG	1 cut(s)	127
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	6 cut(s)	90, 162, 183, 294, 309, 312
Sau3AI	GATC	2 cut(s)	175, 384
ScrFI	CCNGG	1 cut(s)	49
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	9 cut(s)	36, 86, 127, 139, 184, 211, 260, 295, 399
SmiMI	CAYNNNNRTG	1 cut(s)	127
Sse9I	AATT	2 cut(s)	96, 202
StyD4I	CCNGG	1 cut(s)	47
StyI	CCWWGG	1 cut(s)	74
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	5 cut(s)	64, 100, 178, 196, 366
TasI	AATT	2 cut(s)	96, 202
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TseI	GCWGC	6 cut(s)	89, 161, 182, 293, 308, 311
TspDTI	ATGAA	2 cut(s)	243, 276
XapI	RAATTY	2 cut(s)	96, 202
XmnI	GAANNNNTTC	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.