Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002859

Physical Location & Seq

Genomic Coordinates Forward (+)

20247329 .. 20248189

Gene Structure 861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G224700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGCACTATATATCTTGCATGTCACAAGCACAACCCATATTTTTGCCACCAAATTTGAATAAAGACCTGTTTCTGCTTAACATGGAAGGGAAGGGAGTGGAGAACCAGCAGAAGGAGCAGACTAAGGTAAGAGATCAAACCCGGTATCGAGGGATTCGGAGGCGACCGTGGGGCAAGTTTGCTGCTGAAATACGTGACCCTTCAAGAAATGGGGCACGCCTATGGCTAGGCACATTTGAGACAGCTGAAGAGGCAGCTAGGGCTTATGATCGAGCTGCTTTCGGCTTCCGGGGTCATTTGGCCATCCTCAACTTCCCTAATGACTACCAGTATCATAACCCATCAAGCTCTTTGATCAGCACTTCATCCTCTTCATCATCATCTCCATTTTCTGCTGCTGATATTGGAAAGAGTACTAATTTTGGCAGAGGCCAAGAAGAAGAAGAAGTTATAGAGTTTGAGTACCTGGACAACATGGTTTTGGAGGAGCTTCTTGACACAAAAGAGGATCATCATAGACAGGGGAAACCAACCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

180

Amino Acids

20.47

Weight (kDa)

6.08

Isoelectric Point (pI)

62.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002859)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21560 FvH4_2g21561
malus_domestica	MD05G1198800.v1.1 MD10G1185000.v1.1
prunus_persica	Prupe.8G224700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0288241 RchiOBHm_Chr6g0288251 RchiOBHm_Chr6g0288261
rosa_laevigata	RLG00000012420 RLG00000012421 RLG00000012422 RLG00000017373 RLG00000017374
rosa_multiflora	Rmu_co8125528.1_g000001 Rmu_co8198010.1_g000001 Rmu_co8388259.1_g000001 Rmu_sc0001038.1_g000001 Rmu_sc0004300.1_g000010 Rmu_sc0028578.1_g000001 Rmu_sc0028578.1_g000002 Rmu_sc0042461.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180280 Rroxscaffold_7G00180290 Rroxscaffold_7G00180310
rosa_rugosa	Rorug06G0195000 Rorug06G0195100 Rorug06G0195200
rosa_samantha	Rh6AG306000 Rh6AG306100 Rh6AG306200 Rh6BG311600 Rh6BG311700 Rh6BG311800 Rh6CG319600 Rh6CG319700 Rh6DG304900 Rh6DG305000
rosa_wichuraiana	Rw6G026460 Rw6G026470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	516
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	1 cut(s)	52
AcuI	CTGAAG	1 cut(s)	267
AfaI	GTAC	2 cut(s)	415, 464
AfiI	CCNNNNNNNGG	1 cut(s)	112
AgsI	TTSAA	2 cut(s)	58, 204
AjnI	CCWGG	1 cut(s)	465
AluBI	AGCT	5 cut(s)	245, 257, 275, 348, 490
AluI	AGCT	5 cut(s)	245, 257, 275, 348, 490
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	1 cut(s)	516
AoxI	GGCC	2 cut(s)	300, 430
ApeKI	GCWGC	4 cut(s)	182, 254, 275, 395
ApoI	RAATTY	1 cut(s)	52
AsuC2I	CCSGG	2 cut(s)	142, 290
BaeGI	GKGCMC	1 cut(s)	217
BalI	TGGCCA	1 cut(s)	302
BbvI	GCAGC	4 cut(s)	169, 262, 266, 382
BccI	CCATC	2 cut(s)	311, 349
BciT130I	CCWGG	1 cut(s)	467
BclI	TGATCA	1 cut(s)	354
BcnI	CCSGG	2 cut(s)	142, 290
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	2 cut(s)	227, 258
BisI	GCNGC	4 cut(s)	183, 255, 276, 396
BlsI	GCNGC	4 cut(s)	184, 256, 277, 397
BmcAI	AGTACT	1 cut(s)	415
Bme1390I	CCNGG	3 cut(s)	142, 290, 467
BmrFI	CCNGG	3 cut(s)	142, 290, 467
BpuMI	CCSGG	2 cut(s)	142, 290
BsaAI	YACGTR	1 cut(s)	194
BsaJI	CCNNGG	2 cut(s)	167, 289
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse1I	ACTGG	1 cut(s)	328
BseBI	CCWGG	1 cut(s)	467
BseDI	CCNNGG	2 cut(s)	167, 289
BseGI	GGATG	2 cut(s)	303, 365
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseNI	ACTGG	1 cut(s)	328
BseRI	GAGGAG	1 cut(s)	500
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	4 cut(s)	169, 262, 266, 382
Bsh1285I	CGRYCG	1 cut(s)	167
BshFI	GGCC	2 cut(s)	302, 432
BsiEI	CGRYCG	1 cut(s)	167
BsiSI	CCGG	2 cut(s)	142, 289
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmAI	GTCTC	1 cut(s)	233
BsnI	GGCC	2 cut(s)	302, 432
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	4 cut(s)	133, 268, 354, 508
BspANI	GGCC	2 cut(s)	302, 432
BspPI	GGATC	1 cut(s)	516
BsrI	ACTGG	1 cut(s)	328
BssECI	CCNNGG	2 cut(s)	167, 289
BssMI	GATC	4 cut(s)	133, 268, 354, 508
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	1 cut(s)	168
Bst6I	CTCTTC	2 cut(s)	243, 376
BstBAI	YACGTR	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	217
BstDEI	CTNAG	1 cut(s)	123
BstDSI	CCRYGG	1 cut(s)	167
BstF5I	GGATG	2 cut(s)	303, 365
BstKTI	GATC	4 cut(s)	136, 271, 357, 511
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	4 cut(s)	133, 268, 354, 508
BstMCI	CGRYCG	1 cut(s)	167
BstMWI	GCNNNNNNNGC	3 cut(s)	115, 251, 260
BstNI	CCWGG	1 cut(s)	467
BstNSI	RCATGY	1 cut(s)	22
BstSCI	CCNGG	3 cut(s)	140, 288, 465
BstSLI	GKGCMC	1 cut(s)	217
BstV1I	GCAGC	4 cut(s)	169, 262, 266, 382
BsuRI	GGCC	2 cut(s)	302, 432
BtgI	CCRYGG	1 cut(s)	167
BtsCI	GGATG	2 cut(s)	303, 365
Cac8I	GCNNGC	1 cut(s)	217
Csp6I	GTAC	2 cut(s)	414, 463
CspCI	CAANNNNNGTGG	2 cut(s)	36, 71
CviAII	CATG	3 cut(s)	19, 82, 475
CviQI	GTAC	2 cut(s)	414, 463
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	4 cut(s)	135, 270, 356, 510
DpnII	GATC	4 cut(s)	133, 268, 354, 508
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	2 cut(s)	243, 376
EarI	CTCTTC	2 cut(s)	243, 376
Eco57I	CTGAAG	1 cut(s)	267
EcoRII	CCWGG	1 cut(s)	465
FaeI	CATG	3 cut(s)	22, 85, 478
FatI	CATG	3 cut(s)	18, 81, 474
FbaI	TGATCA	1 cut(s)	354
Fnu4HI	GCNGC	4 cut(s)	183, 255, 276, 396
FokI	GGATG	2 cut(s)	290, 352
Fsp4HI	GCNGC	4 cut(s)	183, 255, 276, 396
FspBI	CTAG	2 cut(s)	227, 258
GluI	GCNGC	4 cut(s)	183, 255, 276, 396
HaeIII	GGCC	2 cut(s)	302, 432
HapII	CCGG	2 cut(s)	142, 289
Hin1II	CATG	3 cut(s)	22, 85, 478
HinfI	GANTC	1 cut(s)	154
HpaII	CCGG	2 cut(s)	142, 289
Hpy188I	TCNGA	1 cut(s)	159
Hpy188III	TCNNGA	2 cut(s)	204, 494
HpyAV	CCTTC	4 cut(s)	80, 85, 106, 210
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	2 cut(s)	4, 18
HpyF10VI	GCNNNNNNNGC	3 cut(s)	115, 251, 260
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	3 cut(s)	22, 85, 478
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	4 cut(s)	133, 268, 354, 508
LmnI	GCTCC	2 cut(s)	115, 487
LpnPI	CCDG	8 cut(s)	80, 119, 155, 302, 341, 452, 479, 506
Lsp1109I	GCAGC	4 cut(s)	169, 262, 266, 382
MaeI	CTAG	2 cut(s)	227, 258
MaeII	ACGT	1 cut(s)	193
MaeIII	GTNAC	2 cut(s)	21, 194
MalI	GATC	4 cut(s)	135, 270, 356, 510
MboI	GATC	4 cut(s)	133, 268, 354, 508
MboII	GAAGA	5 cut(s)	260, 363, 449, 452, 455
MhlI	GDGCHC	1 cut(s)	217
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	2 cut(s)	52, 418
MluNI	TGGCCA	1 cut(s)	302
MnlI	CCTC	8 cut(s)	143, 153, 244, 317, 379, 422, 478, 499
Mox20I	TGGCCA	1 cut(s)	302
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	1 cut(s)	78
MslI	CAYNNNNRTG	1 cut(s)	220
Msp20I	TGGCCA	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	2 cut(s)	142, 289
MspR9I	CCNGG	3 cut(s)	142, 290, 467
MvaI	CCWGG	1 cut(s)	467
MwoI	GCNNNNNNNGC	3 cut(s)	115, 251, 260
NciI	CCSGG	2 cut(s)	142, 290
NdeII	GATC	4 cut(s)	133, 268, 354, 508
NlaIII	CATG	3 cut(s)	22, 85, 478
NmuCI	GTSAC	2 cut(s)	21, 194
NspI	RCATGY	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	154
PkrI	GCNGC	4 cut(s)	184, 256, 277, 397
Ppu21I	YACGTR	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	465
PspGI	CCWGG	1 cut(s)	465
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	2 cut(s)	415, 464
RsaNI	GTAC	2 cut(s)	414, 463
RseI	CAYNNNNRTG	1 cut(s)	220
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	4 cut(s)	183, 255, 276, 396
Sau3AI	GATC	4 cut(s)	133, 268, 354, 508
ScaI	AGTACT	1 cut(s)	415
ScrFI	CCNGG	3 cut(s)	142, 290, 467
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	9 cut(s)	69, 129, 196, 247, 259, 277, 350, 468, 492
SmiMI	CAYNNNNRTG	1 cut(s)	220
Sse9I	AATT	2 cut(s)	52, 418
SspMI	CTAG	2 cut(s)	227, 258
StyD4I	CCNGG	3 cut(s)	140, 288, 465
TaaI	ACNGT	1 cut(s)	168
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	2 cut(s)	148, 271
TasI	AATT	2 cut(s)	52, 418
TatI	WGTACW	1 cut(s)	413
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TseFI	GTSAC	2 cut(s)	21, 194
TseI	GCWGC	4 cut(s)	182, 254, 275, 395
Tsp45I	GTSAC	2 cut(s)	21, 194
TspDTI	ATGAA	2 cut(s)	354, 363
XapI	RAATTY	1 cut(s)	52
XceI	RCATGY	1 cut(s)	22
XspI	CTAG	2 cut(s)	227, 258
ZrmI	AGTACT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.