RLG00000012420

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002859
Physical Location & Seq
Reverse (-)
18611648 .. 18612064
417 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012420

Sequence Viewer

Length: 417 bp
ATGGAAGGGAAAAGAGAACAGAGCAAGCCGAAGGTAAGGGATCAAATCCGGTATAGAGGCATCCGGAGGCGGCCTTGGGGAAAGTATGCAGCAGAAATTCGGGACCCTACAAGAAACGGGGTACGTCGTTGGTTAGGTACATTTGACACAGCTGAACAGGCAGCAAGGGCTTATGATCGAGCTGCTTTTGGTTTCCGGGGTCGTTTAGCCATCCTCAACTTCCCAAATGAGAGCCAATACCACAATTCATCAACAAGCTCTTTTGTCTCATCAACTTCGCCACCCTCATCGTGTTCCTTGTCATCTGCTGCTGCTAACATTGAAAAAAACTTTGGAAACGAAGAAAGTGGAGTTATAGAGTTTGAGTATTTAGACAATATGATCTTGGAGGAGCTTCTTGCAACACAAGAAAGTTAA

Protein Analysis

139

Amino Acids

15.64

Weight (kDa)

8.81

Isoelectric Point (pI)

73.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 17 - 67 5.5e-12 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 63
AciI CCGC 1 cut(s) 70
AclWI GGATC 1 cut(s) 48
AcsI RAATTY 1 cut(s) 96
AfaI GTAC 2 cut(s) 123, 139
AgsI TTSAA 1 cut(s) 323
AjuI GAANNNNNNNTTGG 2 cut(s) 315, 347
AluBI AGCT 4 cut(s) 152, 182, 258, 394
AluI AGCT 4 cut(s) 152, 182, 258, 394
Alw26I GTCTC 1 cut(s) 271
AlwI GGATC 1 cut(s) 48
Aor13HI TCCGGA 1 cut(s) 63
AoxI GGCC 1 cut(s) 71
ApeKI GCWGC 5 cut(s) 89, 161, 182, 308, 311
ApoI RAATTY 1 cut(s) 96
AspS9I GGNCC 1 cut(s) 103
AsuC2I CCSGG 1 cut(s) 197
AvaII GGWCC 1 cut(s) 103
BbvI GCAGC 5 cut(s) 101, 169, 173, 295, 298
BccI CCATC 1 cut(s) 218
BcnI CCSGG 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 271
BisI GCNGC 6 cut(s) 71, 90, 162, 183, 309, 312
BlsI GCNGC 6 cut(s) 72, 91, 163, 184, 310, 313
Bme1390I CCNGG 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 2 cut(s) 104, 105
BmrFI CCNGG 1 cut(s) 197
BmsI GCATC 1 cut(s) 69
BpuMI CCSGG 1 cut(s) 197
BsaJI CCNNGG 2 cut(s) 74, 196
BsaWI WCCGGW 2 cut(s) 48, 63
BseAI TCCGGA 1 cut(s) 63
BseDI CCNNGG 2 cut(s) 74, 196
BseGI GGATG 2 cut(s) 60, 210
BseRI GAGGAG 1 cut(s) 404
BseXI GCAGC 5 cut(s) 101, 169, 173, 295, 298
BshFI GGCC 1 cut(s) 73
BsiSI CCGG 3 cut(s) 49, 64, 196
BslFI GGGAC 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 271
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 1 cut(s) 73
Bsp13I TCCGGA 1 cut(s) 63
Bsp143I GATC 3 cut(s) 40, 175, 381
BspACI CCGC 1 cut(s) 70
BspANI GGCC 1 cut(s) 73
BspEI TCCGGA 1 cut(s) 63
BspLI GGNNCC 2 cut(s) 104, 105
BspPI GGATC 1 cut(s) 48
BssECI CCNNGG 2 cut(s) 74, 196
BssMI GATC 3 cut(s) 40, 175, 381
BssT1I CCWWGG 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 26
BstF5I GGATG 2 cut(s) 60, 210
BstKTI GATC 3 cut(s) 43, 178, 384
BstMAI GTCTC 1 cut(s) 271
BstMBI GATC 3 cut(s) 40, 175, 381
BstMWI GCNNNNNNNGC 2 cut(s) 158, 167
BstSCI CCNGG 1 cut(s) 195
BstV1I GCAGC 5 cut(s) 101, 169, 173, 295, 298
BsuRI GGCC 1 cut(s) 73
BtsCI GGATG 2 cut(s) 60, 210
Cac8I GCNNGC 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 103
Csp6I GTAC 2 cut(s) 122, 138
CviJI RGCY 9 cut(s) 28, 73, 152, 170, 182, 209, 234, 258, 394
CviKI_1 RGCY 9 cut(s) 28, 73, 152, 170, 182, 209, 234, 258, 394
CviQI GTAC 2 cut(s) 122, 138
DpnI GATC 3 cut(s) 42, 177, 383
DpnII GATC 3 cut(s) 40, 175, 381
Eco130I CCWWGG 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 103
EcoO109I RGGNCCY 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 74
FaiI YATR 5 cut(s) 54, 87, 174, 356, 380
FaqI GGGAC 1 cut(s) 116
Fnu4HI GCNGC 6 cut(s) 71, 90, 162, 183, 309, 312
FokI GGATG 2 cut(s) 47, 197
Fsp4HI GCNGC 6 cut(s) 71, 90, 162, 183, 309, 312
GluI GCNGC 6 cut(s) 71, 90, 162, 183, 309, 312
HaeIII GGCC 1 cut(s) 73
HapII CCGG 3 cut(s) 49, 64, 196
HpaII CCGG 3 cut(s) 49, 64, 196
Hpy188III TCNNGA 2 cut(s) 64, 101
Hpy99I CGWCG 1 cut(s) 129
HpyAV CCTTC 1 cut(s) 25
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 2 cut(s) 89, 401
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 167
HpySE526I ACGT 1 cut(s) 124
KflI GGGWCCC 1 cut(s) 103
Kpn2I TCCGGA 1 cut(s) 63
Kzo9I GATC 3 cut(s) 40, 175, 381
LmnI GCTCC 1 cut(s) 391
LpnPI CCDG 4 cut(s) 62, 77, 143, 209
Lsp1109I GCAGC 5 cut(s) 101, 169, 173, 295, 298
LweI GCATC 1 cut(s) 69
MaeII ACGT 1 cut(s) 124
MalI GATC 3 cut(s) 42, 177, 383
MboI GATC 3 cut(s) 40, 175, 381
MboII GAAGA 1 cut(s) 353
MluCI AATT 2 cut(s) 96, 244
MnlI CCTC 5 cut(s) 50, 60, 224, 295, 382
MroI TCCGGA 1 cut(s) 63
MseI TTAA 1 cut(s) 415
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 3 cut(s) 49, 64, 196
MspR9I CCNGG 1 cut(s) 197
MwoI GCNNNNNNNGC 2 cut(s) 158, 167
NciI CCSGG 1 cut(s) 197
NdeII GATC 3 cut(s) 40, 175, 381
NlaIV GGNNCC 2 cut(s) 104, 105
PkrI GCNGC 6 cut(s) 72, 91, 163, 184, 310, 313
PpuMI RGGWCCY 1 cut(s) 103
Psp5II RGGWCCY 1 cut(s) 103
PspN4I GGNNCC 2 cut(s) 104, 105
PspPI GGNCC 1 cut(s) 103
PspPPI RGGWCCY 1 cut(s) 103
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 2 cut(s) 123, 139
RsaNI GTAC 2 cut(s) 122, 138
SaqAI TTAA 1 cut(s) 415
SatI GCNGC 6 cut(s) 71, 90, 162, 183, 309, 312
Sau3AI GATC 3 cut(s) 40, 175, 381
Sau96I GGNCC 1 cut(s) 103
ScrFI CCNGG 1 cut(s) 197
SetI ASST 7 cut(s) 36, 127, 139, 154, 184, 260, 396
SfaNI GCATC 1 cut(s) 69
SinI GGWCC 1 cut(s) 103
Sse9I AATT 2 cut(s) 96, 244
SsiI CCGC 1 cut(s) 70
StyD4I CCNGG 1 cut(s) 195
StyI CCWWGG 1 cut(s) 74
TaiI ACGT 1 cut(s) 127
TaqI TCGA 1 cut(s) 178
TasI AATT 2 cut(s) 96, 244
TauI GCSGC 1 cut(s) 73
Tru1I TTAA 1 cut(s) 415
Tru9I TTAA 1 cut(s) 415
TseI GCWGC 5 cut(s) 89, 161, 182, 308, 311
TspDTI ATGAA 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 103
XapI RAATTY 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.