Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002859

Physical Location & Seq

Genomic Coordinates Reverse (-)

19736674 .. 19737093

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00180280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGAGGGGAAAAGAGAACAGAGCAAGCCGAAGGTAAGGGATCAAATCCGGTATAGAGGCATCCGGAGGCGGCCTTGGGGAAAGTATGCAGCAGAAATTCGGGACCCTACAAGAAACGGGGTACGTCGTTGGTTAGGTACATTTGACACAGCTGAACAGGCAGCAAGGGCTTATGATCGAGCTGCTTTTGGTTTCCGGGGTCGTTTAGCCATCCTCAACTTCCCAAATGAGAGTCAATACCACAATTCATCAACAAGCACTTTTGTCACATCAACTTCGCCACCCTCATCGTCTTCCTTTTCATCTGCTGCTGCTGCTAACATTGAAAAAAACTTTGGAAACGAAGAAAGTGGAGTCATAGAGTTTGAGTATTTAGACAATATGATCTTGGAGGAGCTTCTTGCAACACAAGAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

139

Amino Acids

15.76

Weight (kDa)

9.04

Isoelectric Point (pI)

71.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	17 - 67	5.5e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002859)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21560 FvH4_2g21561
malus_domestica	MD05G1198800.v1.1 MD10G1185000.v1.1
prunus_persica	Prupe.8G224700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0288241 RchiOBHm_Chr6g0288251 RchiOBHm_Chr6g0288261
rosa_laevigata	RLG00000012420 RLG00000012421 RLG00000012422 RLG00000017373 RLG00000017374
rosa_multiflora	Rmu_co8125528.1_g000001 Rmu_co8198010.1_g000001 Rmu_co8388259.1_g000001 Rmu_sc0001038.1_g000001 Rmu_sc0004300.1_g000010 Rmu_sc0028578.1_g000001 Rmu_sc0028578.1_g000002 Rmu_sc0042461.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180280 Rroxscaffold_7G00180290 Rroxscaffold_7G00180310
rosa_rugosa	Rorug06G0195000 Rorug06G0195100 Rorug06G0195200
rosa_samantha	Rh6AG306000 Rh6AG306100 Rh6AG306200 Rh6BG311600 Rh6BG311700 Rh6BG311800 Rh6CG319600 Rh6CG319700 Rh6DG304900 Rh6DG305000
rosa_wichuraiana	Rw6G026460 Rw6G026470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	63
AciI	CCGC	1 cut(s)	70
AclWI	GGATC	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	96
AfaI	GTAC	2 cut(s)	123, 139
AgsI	TTSAA	1 cut(s)	326
AjuI	GAANNNNNNNTTGG	2 cut(s)	318, 350
AluBI	AGCT	3 cut(s)	152, 182, 397
AluI	AGCT	3 cut(s)	152, 182, 397
AlwI	GGATC	1 cut(s)	48
Aor13HI	TCCGGA	1 cut(s)	63
AoxI	GGCC	1 cut(s)	71
ApeKI	GCWGC	6 cut(s)	89, 161, 182, 308, 311, 314
ApoI	RAATTY	1 cut(s)	96
AspS9I	GGNCC	1 cut(s)	103
AsuC2I	CCSGG	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	285
BbvI	GCAGC	6 cut(s)	101, 169, 173, 295, 298, 301
BccI	CCATC	1 cut(s)	218
BcnI	CCSGG	1 cut(s)	197
BisI	GCNGC	7 cut(s)	71, 90, 162, 183, 309, 312, 315
BlsI	GCNGC	7 cut(s)	72, 91, 163, 184, 310, 313, 316
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	2 cut(s)	104, 105
BmrFI	CCNGG	1 cut(s)	197
BmsI	GCATC	1 cut(s)	69
BpiI	GAAGAC	1 cut(s)	285
BpuMI	CCSGG	1 cut(s)	197
BsaJI	CCNNGG	2 cut(s)	74, 196
BsaWI	WCCGGW	2 cut(s)	48, 63
BseAI	TCCGGA	1 cut(s)	63
BseDI	CCNNGG	2 cut(s)	74, 196
BseGI	GGATG	2 cut(s)	60, 210
BseRI	GAGGAG	1 cut(s)	407
BseXI	GCAGC	6 cut(s)	101, 169, 173, 295, 298, 301
BshFI	GGCC	1 cut(s)	73
BsiSI	CCGG	3 cut(s)	49, 64, 196
BslFI	GGGAC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	73
Bsp13I	TCCGGA	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	40, 175, 384
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	1 cut(s)	73
BspEI	TCCGGA	1 cut(s)	63
BspLI	GGNNCC	2 cut(s)	104, 105
BspPI	GGATC	1 cut(s)	48
BssECI	CCNNGG	2 cut(s)	74, 196
BssMI	GATC	3 cut(s)	40, 175, 384
BssT1I	CCWWGG	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	26
BstF5I	GGATG	2 cut(s)	60, 210
BstKTI	GATC	3 cut(s)	43, 178, 387
BstMBI	GATC	3 cut(s)	40, 175, 384
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 167, 314
BstSCI	CCNGG	1 cut(s)	195
BstV1I	GCAGC	6 cut(s)	101, 169, 173, 295, 298, 301
BstV2I	GAAGAC	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	73
BtsCI	GGATG	2 cut(s)	60, 210
Cac8I	GCNNGC	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	103
Csp6I	GTAC	2 cut(s)	122, 138
CviJI	RGCY	7 cut(s)	28, 73, 152, 170, 182, 209, 397
CviKI_1	RGCY	7 cut(s)	28, 73, 152, 170, 182, 209, 397
CviQI	GTAC	2 cut(s)	122, 138
DpnI	GATC	3 cut(s)	42, 177, 386
DpnII	GATC	3 cut(s)	40, 175, 384
Eco130I	CCWWGG	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	74
FaiI	YATR	5 cut(s)	54, 87, 174, 359, 383
FaqI	GGGAC	1 cut(s)	116
Fnu4HI	GCNGC	7 cut(s)	71, 90, 162, 183, 309, 312, 315
FokI	GGATG	2 cut(s)	47, 197
Fsp4HI	GCNGC	7 cut(s)	71, 90, 162, 183, 309, 312, 315
GluI	GCNGC	7 cut(s)	71, 90, 162, 183, 309, 312, 315
HaeIII	GGCC	1 cut(s)	73
HapII	CCGG	3 cut(s)	49, 64, 196
HinfI	GANTC	2 cut(s)	232, 354
HpaII	CCGG	3 cut(s)	49, 64, 196
Hpy188III	TCNNGA	2 cut(s)	64, 101
Hpy99I	CGWCG	1 cut(s)	129
HpyAV	CCTTC	1 cut(s)	25
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	2 cut(s)	89, 404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 167, 314
HpySE526I	ACGT	1 cut(s)	124
KflI	GGGWCCC	1 cut(s)	103
Kpn2I	TCCGGA	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	40, 175, 384
LmnI	GCTCC	1 cut(s)	394
LpnPI	CCDG	4 cut(s)	62, 77, 143, 209
Lsp1109I	GCAGC	6 cut(s)	101, 169, 173, 295, 298, 301
LweI	GCATC	1 cut(s)	69
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	3 cut(s)	42, 177, 386
MboI	GATC	3 cut(s)	40, 175, 384
MboII	GAAGA	2 cut(s)	285, 356
MluCI	AATT	2 cut(s)	96, 244
MlyI	GAGTC	2 cut(s)	241, 363
MnlI	CCTC	5 cut(s)	50, 60, 224, 295, 385
MroI	TCCGGA	1 cut(s)	63
MseI	TTAA	1 cut(s)	418
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	3 cut(s)	49, 64, 196
MspR9I	CCNGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	3 cut(s)	158, 167, 314
NciI	CCSGG	1 cut(s)	197
NdeII	GATC	3 cut(s)	40, 175, 384
NlaIV	GGNNCC	2 cut(s)	104, 105
NmuCI	GTSAC	1 cut(s)	265
PkrI	GCNGC	7 cut(s)	72, 91, 163, 184, 310, 313, 316
PleI	GAGTC	2 cut(s)	240, 362
PpsI	GAGTC	2 cut(s)	240, 362
PpuMI	RGGWCCY	1 cut(s)	103
Psp5II	RGGWCCY	1 cut(s)	103
PspN4I	GGNNCC	2 cut(s)	104, 105
PspPI	GGNCC	1 cut(s)	103
PspPPI	RGGWCCY	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	152
RsaI	GTAC	2 cut(s)	123, 139
RsaNI	GTAC	2 cut(s)	122, 138
SaqAI	TTAA	1 cut(s)	418
SatI	GCNGC	7 cut(s)	71, 90, 162, 183, 309, 312, 315
Sau3AI	GATC	3 cut(s)	40, 175, 384
Sau96I	GGNCC	1 cut(s)	103
SchI	GAGTC	2 cut(s)	241, 363
ScrFI	CCNGG	1 cut(s)	197
SetI	ASST	6 cut(s)	36, 127, 139, 154, 184, 399
SfaNI	GCATC	1 cut(s)	69
SinI	GGWCC	1 cut(s)	103
Sse9I	AATT	2 cut(s)	96, 244
SsiI	CCGC	1 cut(s)	70
StyD4I	CCNGG	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	74
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	1 cut(s)	178
TasI	AATT	2 cut(s)	96, 244
TauI	GCSGC	1 cut(s)	73
Tru1I	TTAA	1 cut(s)	418
Tru9I	TTAA	1 cut(s)	418
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	6 cut(s)	89, 161, 182, 308, 311, 314
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	2 cut(s)	237, 291
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.