Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002859

Physical Location & Seq

Genomic Coordinates Reverse (-)

31539467 .. 31540275

Gene Structure 809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0195000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTACGTCAAGGGATTTAAGTGCCCAACTACAGAGCACATTCACGAGATCTGCCTCCAGCTGAACCAGTATGGACATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGGAAACTAGTTCTCTTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGGCTACTTCCGAGGAAGGTAGCGCTTTTGGTTACTATTCTGGTGGCTCAGGCGGTTACCACAGTGGCTCAAACGTTTCTCTTGAGCTCAGCCTCAATCCATCCGGAGCTGCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

198

Amino Acids

21.55

Weight (kDa)

5.49

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 91	1.6e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002859)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21560 FvH4_2g21561
malus_domestica	MD05G1198800.v1.1 MD10G1185000.v1.1
prunus_persica	Prupe.8G224700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0288241 RchiOBHm_Chr6g0288251 RchiOBHm_Chr6g0288261
rosa_laevigata	RLG00000012420 RLG00000012421 RLG00000012422 RLG00000017373 RLG00000017374
rosa_multiflora	Rmu_co8125528.1_g000001 Rmu_co8198010.1_g000001 Rmu_co8388259.1_g000001 Rmu_sc0001038.1_g000001 Rmu_sc0004300.1_g000010 Rmu_sc0028578.1_g000001 Rmu_sc0028578.1_g000002 Rmu_sc0042461.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180280 Rroxscaffold_7G00180290 Rroxscaffold_7G00180310
rosa_rugosa	Rorug06G0195000 Rorug06G0195100 Rorug06G0195200
rosa_samantha	Rh6AG306000 Rh6AG306100 Rh6AG306200 Rh6BG311600 Rh6BG311700 Rh6BG311800 Rh6CG319600 Rh6CG319700 Rh6DG304900 Rh6DG305000
rosa_wichuraiana	Rw6G026460 Rw6G026470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	465
AccIII	TCCGGA	1 cut(s)	581
AciI	CCGC	1 cut(s)	531
AclI	AACGTT	1 cut(s)	552
AclWI	GGATC	3 cut(s)	141, 330, 343
AcuI	CTGAAG	1 cut(s)	497
AcyI	GRCGYC	1 cut(s)	462
AfaI	GTAC	2 cut(s)	91, 328
AfeI	AGCGCT	1 cut(s)	502
AfiI	CCNNNNNNNGG	1 cut(s)	452
AflIII	ACRYGT	1 cut(s)	214
AgsI	TTSAA	1 cut(s)	428
AhlI	ACTAGT	1 cut(s)	314
AjnI	CCWGG	2 cut(s)	92, 417
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	4 cut(s)	53, 199, 565, 587
AluI	AGCT	4 cut(s)	53, 199, 565, 587
Alw21I	GWGCWC	3 cut(s)	177, 453, 567
Alw44I	GTGCAC	1 cut(s)	449
AlwI	GGATC	3 cut(s)	141, 330, 343
Ama87I	CYCGRG	1 cut(s)	261
Aor13HI	TCCGGA	1 cut(s)	581
Aor51HI	AGCGCT	1 cut(s)	502
ApaLI	GTGCAC	1 cut(s)	449
ApeKI	GCWGC	3 cut(s)	50, 293, 587
AspLEI	GCGC	1 cut(s)	503
AspS9I	GGNCC	1 cut(s)	357
AsuHPI	GGTGA	1 cut(s)	407
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	357
BaeGI	GKGCMC	3 cut(s)	164, 306, 453
BamHI	GGATCC	1 cut(s)	335
BanII	GRGCYC	2 cut(s)	262, 567
BauI	CACGAG	1 cut(s)	182
Bbv12I	GWGCWC	3 cut(s)	177, 453, 567
BbvI	GCAGC	3 cut(s)	62, 280, 574
BccI	CCATC	1 cut(s)	586
BceAI	ACGGC	2 cut(s)	72, 469
BciT130I	CCWGG	2 cut(s)	94, 419
BcuI	ACTAGT	1 cut(s)	314
BfaI	CTAG	2 cut(s)	315, 595
BfmI	CTRYAG	1 cut(s)	168
BfoI	RGCGCY	1 cut(s)	504
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	3 cut(s)	51, 294, 588
BlpI	GCTNAGC	1 cut(s)	566
BlsI	GCNGC	3 cut(s)	52, 295, 589
Bme1390I	CCNGG	2 cut(s)	94, 419
Bme18I	GGWCC	1 cut(s)	357
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	357
BmiI	GGNNCC	4 cut(s)	6, 245, 337, 358
BmrFI	CCNGG	2 cut(s)	94, 419
BpmI	CTGGAG	4 cut(s)	93, 179, 282, 399
Bpu10I	CCTNAGC	1 cut(s)	526
Bpu1102I	GCTNAGC	1 cut(s)	566
BpuEI	CTTGAG	2 cut(s)	113, 581
BsaHI	GRCGYC	1 cut(s)	462
BsaJI	CCNNGG	2 cut(s)	306, 489
BsaWI	WCCGGW	1 cut(s)	581
Bsc4I	CCNNNNNNNGG	1 cut(s)	452
Bse1I	ACTGG	5 cut(s)	205, 299, 334, 367, 376
BseAI	TCCGGA	1 cut(s)	581
BseBI	CCWGG	2 cut(s)	94, 419
BseDI	CCNNGG	2 cut(s)	306, 489
BseGI	GGATG	2 cut(s)	389, 578
BseLI	CCNNNNNNNGG	1 cut(s)	452
BseMII	CTCAG	2 cut(s)	540, 580
BseNI	ACTGG	5 cut(s)	205, 299, 334, 367, 376
BseRI	GAGGAG	3 cut(s)	44, 420, 423
BseSI	GKGCMC	3 cut(s)	164, 306, 453
BseXI	GCAGC	3 cut(s)	62, 280, 574
BsiHKAI	GWGCWC	3 cut(s)	177, 453, 567
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	582
BslI	CCNNNNNNNGG	1 cut(s)	452
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	6 cut(s)	164, 177, 262, 306, 453, 567
Bsp13I	TCCGGA	1 cut(s)	581
Bsp143I	GATC	5 cut(s)	133, 186, 335, 343, 412
Bsp1720I	GCTNAGC	1 cut(s)	566
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	1 cut(s)	531
BspCNI	CTCAG	2 cut(s)	539, 579
BspEI	TCCGGA	1 cut(s)	581
BspLI	GGNNCC	4 cut(s)	6, 245, 337, 358
BspPI	GGATC	3 cut(s)	141, 330, 343
BsrI	ACTGG	5 cut(s)	205, 299, 334, 367, 376
BssECI	CCNNGG	2 cut(s)	306, 489
BssMI	GATC	5 cut(s)	133, 186, 335, 343, 412
BssNI	GRCGYC	1 cut(s)	462
BssSI	CACGAG	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	2 cut(s)	94, 419
Bst4CI	ACNGT	1 cut(s)	542
Bst6I	CTCTTC	1 cut(s)	438
BstACI	GRCGYC	1 cut(s)	462
BstDEI	CTNAG	2 cut(s)	526, 566
BstDSI	CCRYGG	1 cut(s)	306
BstEII	GGTNACC	2 cut(s)	470, 533
BstF5I	GGATG	2 cut(s)	389, 578
BstH2I	RGCGCY	1 cut(s)	504
BstHHI	GCGC	1 cut(s)	503
BstKTI	GATC	5 cut(s)	136, 189, 338, 346, 415
BstMBI	GATC	5 cut(s)	133, 186, 335, 343, 412
BstNI	CCWGG	2 cut(s)	94, 419
BstNSI	RCATGY	1 cut(s)	218
BstPI	GGTNACC	2 cut(s)	470, 533
BstSCI	CCNGG	2 cut(s)	92, 417
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	3 cut(s)	164, 306, 453
BstV1I	GCAGC	3 cut(s)	62, 280, 574
BstX2I	RGATCY	3 cut(s)	133, 186, 335
BstXI	CCANNNNNNTGG	1 cut(s)	53
BstYI	RGATCY	3 cut(s)	133, 186, 335
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	2 cut(s)	389, 578
BtsIMutI	CAGTG	3 cut(s)	306, 360, 547
CfoI	GCGC	1 cut(s)	503
Cfr13I	GGNCC	1 cut(s)	357
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	90, 327
CviAII	CATG	3 cut(s)	70, 215, 307
CviQI	GTAC	2 cut(s)	90, 327
DdeI	CTNAG	2 cut(s)	526, 566
DpnI	GATC	5 cut(s)	135, 188, 337, 345, 414
DpnII	GATC	5 cut(s)	133, 186, 335, 343, 412
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Ecl136II	GAGCTC	1 cut(s)	565
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	2 cut(s)	262, 567
Eco47I	GGWCC	1 cut(s)	357
Eco47III	AGCGCT	1 cut(s)	502
Eco53kI	GAGCTC	1 cut(s)	565
Eco57I	CTGAAG	1 cut(s)	497
Eco88I	CYCGRG	1 cut(s)	261
Eco91I	GGTNACC	2 cut(s)	470, 533
EcoICRI	GAGCTC	1 cut(s)	565
EcoO65I	GGTNACC	2 cut(s)	470, 533
EcoRII	CCWGG	2 cut(s)	92, 417
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	2 cut(s)	262, 567
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	3 cut(s)	73, 218, 310
FaiI	YATR	4 cut(s)	71, 210, 216, 308
FatI	CATG	3 cut(s)	69, 214, 306
Fnu4HI	GCNGC	3 cut(s)	51, 294, 588
FokI	GGATG	2 cut(s)	376, 565
FriOI	GRGCYC	2 cut(s)	262, 567
Fsp4HI	GCNGC	3 cut(s)	51, 294, 588
FspBI	CTAG	2 cut(s)	315, 595
GlaI	GCGC	1 cut(s)	502
GluI	GCNGC	3 cut(s)	51, 294, 588
GsuI	CTGGAG	4 cut(s)	93, 179, 282, 399
HaeII	RGCGCY	1 cut(s)	504
HapII	CCGG	1 cut(s)	582
HhaI	GCGC	1 cut(s)	503
Hin1I	GRCGYC	1 cut(s)	462
Hin1II	CATG	3 cut(s)	73, 218, 310
Hin6I	GCGC	1 cut(s)	501
HinP1I	GCGC	1 cut(s)	501
HinfI	GANTC	2 cut(s)	100, 123
HpaII	CCGG	1 cut(s)	582
HphI	GGTGA	1 cut(s)	407
Hpy166II	GTNNAC	2 cut(s)	360, 451
Hpy188I	TCNGA	1 cut(s)	490
Hpy188III	TCNNGA	6 cut(s)	110, 182, 247, 263, 560, 582
Hpy8I	GTNNAC	2 cut(s)	360, 451
HpyAV	CCTTC	2 cut(s)	472, 488
HpyCH4III	ACNGT	1 cut(s)	542
HpyCH4IV	ACGT	4 cut(s)	144, 252, 462, 552
HpyCH4V	TGCA	2 cut(s)	397, 451
HpyF3I	CTNAG	2 cut(s)	526, 566
HpySE526I	ACGT	4 cut(s)	144, 252, 462, 552
Hsp92I	GRCGYC	1 cut(s)	462
Hsp92II	CATG	3 cut(s)	73, 218, 310
HspAI	GCGC	1 cut(s)	501
Kpn2I	TCCGGA	1 cut(s)	581
Kzo9I	GATC	5 cut(s)	133, 186, 335, 343, 412
LmnI	GCTCC	2 cut(s)	301, 584
Lsp1109I	GCAGC	3 cut(s)	62, 280, 574
MabI	ACCWGGT	1 cut(s)	92
MaeI	CTAG	2 cut(s)	315, 595
MaeII	ACGT	4 cut(s)	144, 252, 462, 552
MaeIII	GTNAC	3 cut(s)	470, 509, 533
MalI	GATC	5 cut(s)	135, 188, 337, 345, 414
MboI	GATC	5 cut(s)	133, 186, 335, 343, 412
MboII	GAAGA	1 cut(s)	425
MflI	RGATCY	3 cut(s)	133, 186, 335
MhlI	GDGCHC	6 cut(s)	164, 177, 262, 306, 453, 567
MluCI	AATT	1 cut(s)	349
MroI	TCCGGA	1 cut(s)	581
MseI	TTAA	1 cut(s)	156
MspA1I	CMGCKG	2 cut(s)	53, 199
MspI	CCGG	1 cut(s)	582
MspR9I	CCNGG	2 cut(s)	94, 419
MvaI	CCWGG	2 cut(s)	94, 419
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	5 cut(s)	133, 186, 335, 343, 412
NlaIII	CATG	3 cut(s)	73, 218, 310
NlaIV	GGNNCC	4 cut(s)	6, 245, 337, 358
NspI	RCATGY	1 cut(s)	218
PaeR7I	CTCGAG	1 cut(s)	261
PciI	ACATGT	1 cut(s)	214
PcsI	WCGNNNNNNNCGW	1 cut(s)	459
PfeI	GAWTC	2 cut(s)	100, 123
PkrI	GCNGC	3 cut(s)	52, 295, 589
PscI	ACATGT	1 cut(s)	214
Psp124BI	GAGCTC	1 cut(s)	567
Psp1406I	AACGTT	1 cut(s)	552
Psp6I	CCWGG	2 cut(s)	92, 417
PspEI	GGTNACC	2 cut(s)	470, 533
PspGI	CCWGG	2 cut(s)	92, 417
PspN4I	GGNNCC	4 cut(s)	6, 245, 337, 358
PspPI	GGNCC	1 cut(s)	357
PsuI	RGATCY	3 cut(s)	133, 186, 335
PvuII	CAGCTG	2 cut(s)	53, 199
RsaI	GTAC	2 cut(s)	91, 328
RsaNI	GTAC	2 cut(s)	90, 327
SacI	GAGCTC	1 cut(s)	567
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	3 cut(s)	51, 294, 588
Sau3AI	GATC	5 cut(s)	133, 186, 335, 343, 412
Sau96I	GGNCC	1 cut(s)	357
ScrFI	CCNGG	2 cut(s)	94, 419
SduI	GDGCHC	6 cut(s)	164, 177, 262, 306, 453, 567
SexAI	ACCWGGT	1 cut(s)	92
SfcI	CTRYAG	1 cut(s)	168
Sfr274I	CTCGAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	357
SlaI	CTCGAG	1 cut(s)	261
SmlI	CTYRAG	3 cut(s)	128, 261, 560
SmoI	CTYRAG	3 cut(s)	128, 261, 560
SpeI	ACTAGT	1 cut(s)	314
Sse9I	AATT	1 cut(s)	349
SsiI	CCGC	1 cut(s)	531
SspMI	CTAG	2 cut(s)	315, 595
SstI	GAGCTC	1 cut(s)	567
StyD4I	CCNGG	2 cut(s)	92, 417
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	542
TaiI	ACGT	4 cut(s)	147, 255, 465, 555
TaqI	TCGA	1 cut(s)	262
TasI	AATT	1 cut(s)	349
TfiI	GAWTC	2 cut(s)	100, 123
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	3 cut(s)	306, 367, 547
TseI	GCWGC	3 cut(s)	50, 293, 587
TspDTI	ATGAA	1 cut(s)	290
TspRI	CASTG	3 cut(s)	306, 367, 547
VneI	GTGCAC	1 cut(s)	449
VpaK11BI	GGWCC	1 cut(s)	357
XceI	RCATGY	1 cut(s)	218
XhoI	CTCGAG	1 cut(s)	261
XspI	CTAG	2 cut(s)	315, 595
ZraI	GACGTC	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.