Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002859

Physical Location & Seq

Genomic Coordinates Forward (+)

32666145 .. 32666621

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1198800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGAGGGGAAGAGAGGACCAGAGAATAATAACCAGCAGAGGGAGCCGAAGGTACGAGGTCAAAACCCGTATAGAGGGATTCGGAGGCGGCCGTGGGGTAAGTTTGCAGCTGAAATTCGTGACCCTACGAGAAATGGAGCACGGCTATGGTTAGGCACATTTGAGACAGCTGAGGAGGCAGCAAGGGCTTATGATCGAGCTGCTTTCGGCTTTCGAGGCCATTTAGCCATACTCAATTTTCCAAATGACTACCAATATCACAACCCTTCAAGCTCTATGAGCACTTTATCTTCGTCTTCATCTTCTGCTTCTTCCTCATCTTTATTTCCGGGCGTGGATCCTGGAAGGAGTATTAATTTTGGAAGAGGCCAGGAAGAAGACGAAGTTATTGAGTTTGAGTATTTGGACAACAATCTCTTGGAGGACCTTCTTGATACAAAAGAAGATCATCATAGGCAGGGGCAACCAACACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

159

Amino Acids

17.9

Weight (kDa)

5.83

Isoelectric Point (pI)

54.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	24 - 73	1.2e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002859)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21560 FvH4_2g21561
malus_domestica	MD05G1198800.v1.1 MD10G1185000.v1.1
prunus_persica	Prupe.8G224700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0288241 RchiOBHm_Chr6g0288251 RchiOBHm_Chr6g0288261
rosa_laevigata	RLG00000012420 RLG00000012421 RLG00000012422 RLG00000017373 RLG00000017374
rosa_multiflora	Rmu_co8125528.1_g000001 Rmu_co8198010.1_g000001 Rmu_co8388259.1_g000001 Rmu_sc0001038.1_g000001 Rmu_sc0004300.1_g000010 Rmu_sc0028578.1_g000001 Rmu_sc0028578.1_g000002 Rmu_sc0042461.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180280 Rroxscaffold_7G00180290 Rroxscaffold_7G00180310
rosa_rugosa	Rorug06G0195000 Rorug06G0195100 Rorug06G0195200
rosa_samantha	Rh6AG306000 Rh6AG306100 Rh6AG306200 Rh6BG311600 Rh6BG311700 Rh6BG311800 Rh6CG319600 Rh6CG319700 Rh6DG304900 Rh6DG305000
rosa_wichuraiana	Rw6G026460 Rw6G026470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	2 cut(s)	332, 345
AcoI	YGGCCR	1 cut(s)	89
AcsI	RAATTY	1 cut(s)	114
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	2 cut(s)	40, 74
AgsI	TTSAA	1 cut(s)	270
AjnI	CCWGG	2 cut(s)	340, 369
AluBI	AGCT	4 cut(s)	110, 170, 200, 273
AluI	AGCT	4 cut(s)	110, 170, 200, 273
Alw21I	GWGCWC	2 cut(s)	142, 284
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	2 cut(s)	332, 345
AoxI	GGCC	3 cut(s)	89, 217, 367
ApeKI	GCWGC	3 cut(s)	107, 179, 200
ApoI	RAATTY	1 cut(s)	114
AseI	ATTAAT	1 cut(s)	354
AspS9I	GGNCC	2 cut(s)	17, 424
AsuC2I	CCSGG	1 cut(s)	330
AvaII	GGWCC	2 cut(s)	17, 424
BamHI	GGATCC	1 cut(s)	337
BbsI	GAAGAC	2 cut(s)	288, 384
Bbv12I	GWGCWC	2 cut(s)	142, 284
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	3 cut(s)	119, 187, 191
BceAI	ACGGC	2 cut(s)	76, 158
BciT130I	CCWGG	2 cut(s)	342, 371
BcnI	CCSGG	1 cut(s)	330
BcoDI	GTCTC	1 cut(s)	158
BisI	GCNGC	4 cut(s)	89, 108, 180, 201
BlsI	GCNGC	4 cut(s)	90, 109, 181, 202
Bme1390I	CCNGG	3 cut(s)	330, 342, 371
Bme18I	GGWCC	2 cut(s)	17, 424
BmgT120I	GGNCC	2 cut(s)	17, 424
BmiI	GGNNCC	2 cut(s)	45, 339
BmrFI	CCNGG	3 cut(s)	330, 342, 371
BpiI	GAAGAC	2 cut(s)	288, 384
Bpu10I	CCTNAGC	1 cut(s)	171
BpuMI	CCSGG	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 74
BseBI	CCWGG	2 cut(s)	342, 371
BseDI	CCNNGG	1 cut(s)	92
BseLI	CCNNNNNNNGG	2 cut(s)	40, 74
BseMII	CTCAG	1 cut(s)	162
BseRI	GAGGAG	1 cut(s)	188
BseX3I	CGGCCG	1 cut(s)	89
BseXI	GCAGC	3 cut(s)	119, 187, 191
Bsh1285I	CGRYCG	1 cut(s)	92
BshFI	GGCC	3 cut(s)	91, 219, 369
BsiEI	CGRYCG	1 cut(s)	92
BsiHKAI	GWGCWC	2 cut(s)	142, 284
BsiSI	CCGG	1 cut(s)	329
BslI	CCNNNNNNNGG	2 cut(s)	40, 74
BsmAI	GTCTC	1 cut(s)	158
BsnI	GGCC	3 cut(s)	91, 219, 369
Bsp1286I	GDGCHC	2 cut(s)	142, 284
Bsp143I	GATC	3 cut(s)	193, 337, 445
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	3 cut(s)	91, 219, 369
BspCNI	CTCAG	1 cut(s)	163
BspLI	GGNNCC	2 cut(s)	45, 339
BspPI	GGATC	2 cut(s)	332, 345
BssECI	CCNNGG	1 cut(s)	92
BssMI	GATC	3 cut(s)	193, 337, 445
Bst2UI	CCWGG	2 cut(s)	342, 371
Bst4CI	ACNGT	1 cut(s)	474
Bst6I	CTCTTC	2 cut(s)	5, 358
BstDEI	CTNAG	1 cut(s)	171
BstDSI	CCRYGG	1 cut(s)	92
BstKTI	GATC	3 cut(s)	196, 340, 448
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	3 cut(s)	193, 337, 445
BstMCI	CGRYCG	1 cut(s)	92
BstMWI	GCNNNNNNNGC	5 cut(s)	43, 176, 185, 216, 279
BstNI	CCWGG	2 cut(s)	342, 371
BstSCI	CCNGG	3 cut(s)	328, 340, 369
BstV1I	GCAGC	3 cut(s)	119, 187, 191
BstV2I	GAAGAC	2 cut(s)	288, 384
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BstZI	CGGCCG	1 cut(s)	89
BsuRI	GGCC	3 cut(s)	91, 219, 369
BtgI	CCRYGG	1 cut(s)	92
Cfr13I	GGNCC	2 cut(s)	17, 424
Csp6I	GTAC	1 cut(s)	53
CviQI	GTAC	1 cut(s)	53
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	3 cut(s)	195, 339, 447
DpnII	GATC	3 cut(s)	193, 337, 445
EaeI	YGGCCR	1 cut(s)	89
EagI	CGGCCG	1 cut(s)	89
Eam1104I	CTCTTC	2 cut(s)	5, 358
EarI	CTCTTC	2 cut(s)	5, 358
EclXI	CGGCCG	1 cut(s)	89
Eco47I	GGWCC	2 cut(s)	17, 424
Eco52I	CGGCCG	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	424
EcoRII	CCWGG	2 cut(s)	340, 369
FaiI	YATR	6 cut(s)	72, 148, 192, 230, 278, 453
Fnu4HI	GCNGC	4 cut(s)	89, 108, 180, 201
Fsp4HI	GCNGC	4 cut(s)	89, 108, 180, 201
GluI	GCNGC	4 cut(s)	89, 108, 180, 201
HaeIII	GGCC	3 cut(s)	91, 219, 369
HapII	CCGG	1 cut(s)	329
HinfI	GANTC	1 cut(s)	79
HpaII	CCGG	1 cut(s)	329
Hpy188I	TCNGA	1 cut(s)	84
Hpy188III	TCNNGA	2 cut(s)	119, 431
HpyAV	CCTTC	4 cut(s)	43, 276, 339, 437
HpyCH4III	ACNGT	1 cut(s)	474
HpyCH4V	TGCA	1 cut(s)	107
HpyF10VI	GCNNNNNNNGC	5 cut(s)	43, 176, 185, 216, 279
HpyF3I	CTNAG	1 cut(s)	171
Kzo9I	GATC	3 cut(s)	193, 337, 445
LmnI	GCTCC	2 cut(s)	43, 137
LpnPI	CCDG	8 cut(s)	33, 47, 327, 342, 354, 356, 383, 443
Lsp1109I	GCAGC	3 cut(s)	119, 187, 191
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	3 cut(s)	195, 339, 447
MboI	GATC	3 cut(s)	193, 337, 445
MboII	GAAGA	9 cut(s)	22, 282, 288, 294, 303, 375, 386, 389, 455
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	2 cut(s)	142, 284
MluCI	AATT	3 cut(s)	114, 235, 355
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	1 cut(s)	145
MspA1I	CMGCKG	2 cut(s)	110, 170
MspI	CCGG	1 cut(s)	329
MspR9I	CCNGG	3 cut(s)	330, 342, 371
MvaI	CCWGG	2 cut(s)	342, 371
MwoI	GCNNNNNNNGC	5 cut(s)	43, 176, 185, 216, 279
NciI	CCSGG	1 cut(s)	330
NdeII	GATC	3 cut(s)	193, 337, 445
NlaIV	GGNNCC	2 cut(s)	45, 339
NmuCI	GTSAC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	79
PfoI	TCCNGGA	1 cut(s)	340
PkrI	GCNGC	4 cut(s)	90, 109, 181, 202
PpuMI	RGGWCCY	1 cut(s)	424
PshBI	ATTAAT	1 cut(s)	354
Psp5II	RGGWCCY	1 cut(s)	424
Psp6I	CCWGG	2 cut(s)	340, 369
PspGI	CCWGG	2 cut(s)	340, 369
PspN4I	GGNNCC	2 cut(s)	45, 339
PspPI	GGNCC	2 cut(s)	17, 424
PspPPI	RGGWCCY	1 cut(s)	424
PsuI	RGATCY	1 cut(s)	337
PvuII	CAGCTG	2 cut(s)	110, 170
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
RseI	CAYNNNNRTG	1 cut(s)	145
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	4 cut(s)	89, 108, 180, 201
Sau3AI	GATC	3 cut(s)	193, 337, 445
Sau96I	GGNCC	2 cut(s)	17, 424
ScrFI	CCNGG	3 cut(s)	330, 342, 371
SduI	GDGCHC	2 cut(s)	142, 284
SetI	ASST	7 cut(s)	54, 61, 112, 172, 202, 275, 429
SinI	GGWCC	2 cut(s)	17, 424
SmiMI	CAYNNNNRTG	1 cut(s)	145
Sse9I	AATT	3 cut(s)	114, 235, 355
SsiI	CCGC	1 cut(s)	88
StyD4I	CCNGG	3 cut(s)	328, 340, 369
TaaI	ACNGT	1 cut(s)	474
TaqI	TCGA	2 cut(s)	196, 214
TasI	AATT	3 cut(s)	114, 235, 355
TauI	GCSGC	1 cut(s)	91
TfiI	GAWTC	1 cut(s)	79
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	3 cut(s)	107, 179, 200
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	288
VpaK11BI	GGWCC	2 cut(s)	17, 424
VspI	ATTAAT	1 cut(s)	354
XapI	RAATTY	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.