Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002859

Physical Location & Seq

Genomic Coordinates Forward (+)

51545478 .. 51546002

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25864

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGGTACATTTACCATGCATGTCACAACCCATATTTTGCCTCCAAATTTGAACTCAAATAGATCAAACCCGGCCACTTCAATTATGGAGGGGAAAAGAGAACAGAGCAAGCCGAAGGTGAGGGATCAAATCCGGTATAGAGGCATCCGGAGGCGGCCTTGGGGAAAGTATGCTGCAGAAATTCGGGACCCTACAAGAAACGGGGTACGTCGTTGGTTAGGTACATTTGACACAGCTGAACAGGCAGCAAGGGCTTATGATCGAGCTGCTTTTGGTTTCCGGGGTCGTTTAGCCATCCTCAACTTCCCAAATGAGAGTCAATACCACAATTCATCAACAAGCTCTTTTGTCACATCAACTTCGCCACCCTCATCGTCTTCCTTTTCATCTGCTGCTGCTAACATTGAAAAAAACTTTGGAAACGAAGAAAGTGGAGTTATAGAGTTTGAGTATTTAGACAATATGATCTTGGAGGAGCTTCTTGCAACACAAGAAAGTCAAGGCAAAAGAAAGGTTCAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

174

Amino Acids

19.68

Weight (kDa)

9.84

Isoelectric Point (pI)

73.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	45 - 95	8.8e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002859)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21560 FvH4_2g21561
malus_domestica	MD05G1198800.v1.1 MD10G1185000.v1.1
prunus_persica	Prupe.8G224700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0288241 RchiOBHm_Chr6g0288251 RchiOBHm_Chr6g0288261
rosa_laevigata	RLG00000012420 RLG00000012421 RLG00000012422 RLG00000017373 RLG00000017374
rosa_multiflora	Rmu_co8125528.1_g000001 Rmu_co8198010.1_g000001 Rmu_co8388259.1_g000001 Rmu_sc0001038.1_g000001 Rmu_sc0004300.1_g000010 Rmu_sc0028578.1_g000001 Rmu_sc0028578.1_g000002 Rmu_sc0042461.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180280 Rroxscaffold_7G00180290 Rroxscaffold_7G00180310
rosa_rugosa	Rorug06G0195000 Rorug06G0195100 Rorug06G0195200
rosa_samantha	Rh6AG306000 Rh6AG306100 Rh6AG306200 Rh6BG311600 Rh6BG311700 Rh6BG311800 Rh6CG319600 Rh6CG319700 Rh6DG304900 Rh6DG305000
rosa_wichuraiana	Rw6G026460 Rw6G026470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	147
AciI	CCGC	1 cut(s)	154
AclWI	GGATC	1 cut(s)	132
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	2 cut(s)	46, 180
AfaI	GTAC	3 cut(s)	7, 207, 223
AgsI	TTSAA	4 cut(s)	52, 81, 407, 518
AjuI	GAANNNNNNNTTGG	2 cut(s)	399, 431
AluBI	AGCT	4 cut(s)	236, 266, 342, 478
AluI	AGCT	4 cut(s)	236, 266, 342, 478
AlwI	GGATC	1 cut(s)	132
Aor13HI	TCCGGA	1 cut(s)	147
AoxI	GGCC	2 cut(s)	72, 155
ApeKI	GCWGC	5 cut(s)	173, 245, 266, 392, 395
ApoI	RAATTY	2 cut(s)	46, 180
AspS9I	GGNCC	1 cut(s)	187
AsuC2I	CCSGG	2 cut(s)	71, 281
AsuHPI	GGTGA	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	187
BbsI	GAAGAC	1 cut(s)	369
BbvI	GCAGC	5 cut(s)	160, 253, 257, 379, 382
BccI	CCATC	1 cut(s)	302
BcnI	CCSGG	2 cut(s)	71, 281
BfmI	CTRYAG	1 cut(s)	174
BisI	GCNGC	6 cut(s)	155, 174, 246, 267, 393, 396
BlsI	GCNGC	6 cut(s)	156, 175, 247, 268, 394, 397
Bme1390I	CCNGG	2 cut(s)	71, 281
Bme18I	GGWCC	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	2 cut(s)	188, 189
BmrFI	CCNGG	2 cut(s)	71, 281
BmsI	GCATC	1 cut(s)	153
BpiI	GAAGAC	1 cut(s)	369
BpuMI	CCSGG	2 cut(s)	71, 281
BsaJI	CCNNGG	2 cut(s)	158, 280
BsaWI	WCCGGW	2 cut(s)	132, 147
BseAI	TCCGGA	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	158, 280
BseGI	GGATG	2 cut(s)	144, 294
BseRI	GAGGAG	1 cut(s)	488
BseXI	GCAGC	5 cut(s)	160, 253, 257, 379, 382
BshFI	GGCC	2 cut(s)	74, 157
BsiSI	CCGG	4 cut(s)	71, 133, 148, 280
BslFI	GGGAC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	200
BsnI	GGCC	2 cut(s)	74, 157
Bsp13I	TCCGGA	1 cut(s)	147
Bsp143I	GATC	4 cut(s)	62, 124, 259, 465
BspACI	CCGC	1 cut(s)	154
BspANI	GGCC	2 cut(s)	74, 157
BspEI	TCCGGA	1 cut(s)	147
BspLI	GGNNCC	2 cut(s)	188, 189
BspMAI	CTGCAG	1 cut(s)	178
BspPI	GGATC	1 cut(s)	132
BssECI	CCNNGG	2 cut(s)	158, 280
BssMI	GATC	4 cut(s)	62, 124, 259, 465
BssT1I	CCWWGG	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	110
BstF5I	GGATG	2 cut(s)	144, 294
BstKTI	GATC	4 cut(s)	65, 127, 262, 468
BstMBI	GATC	4 cut(s)	62, 124, 259, 465
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 251
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	2 cut(s)	69, 279
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	5 cut(s)	160, 253, 257, 379, 382
BstV2I	GAAGAC	1 cut(s)	369
BsuRI	GGCC	2 cut(s)	74, 157
BtsCI	GGATG	2 cut(s)	144, 294
Cac8I	GCNNGC	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	187
Csp6I	GTAC	3 cut(s)	6, 206, 222
CviAII	CATG	2 cut(s)	16, 20
CviJI	RGCY	9 cut(s)	74, 112, 157, 236, 254, 266, 293, 342, 478
CviKI_1	RGCY	9 cut(s)	74, 112, 157, 236, 254, 266, 293, 342, 478
CviQI	GTAC	3 cut(s)	6, 206, 222
DpnI	GATC	4 cut(s)	64, 126, 261, 467
DpnII	GATC	4 cut(s)	62, 124, 259, 465
EaeI	YGGCCR	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	187
EcoO109I	RGGNCCY	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	158
EcoT22I	ATGCAT	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	158
FaeI	CATG	2 cut(s)	19, 23
FaiI	YATR	9 cut(s)	17, 21, 33, 86, 138, 171, 258, 440, 464
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	2 cut(s)	15, 19
Fnu4HI	GCNGC	6 cut(s)	155, 174, 246, 267, 393, 396
FokI	GGATG	2 cut(s)	131, 281
Fsp4HI	GCNGC	6 cut(s)	155, 174, 246, 267, 393, 396
GluI	GCNGC	6 cut(s)	155, 174, 246, 267, 393, 396
HaeIII	GGCC	2 cut(s)	74, 157
HapII	CCGG	4 cut(s)	71, 133, 148, 280
Hin1II	CATG	2 cut(s)	19, 23
HinfI	GANTC	1 cut(s)	316
HpaII	CCGG	4 cut(s)	71, 133, 148, 280
HphI	GGTGA	1 cut(s)	130
Hpy188I	TCNGA	1 cut(s)	524
Hpy188III	TCNNGA	2 cut(s)	148, 185
Hpy99I	CGWCG	1 cut(s)	213
HpyAV	CCTTC	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	3 cut(s)	19, 176, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 251
HpySE526I	ACGT	1 cut(s)	208
Hsp92II	CATG	2 cut(s)	19, 23
KflI	GGGWCCC	1 cut(s)	187
Kpn2I	TCCGGA	1 cut(s)	147
Kzo9I	GATC	4 cut(s)	62, 124, 259, 465
LmnI	GCTCC	1 cut(s)	475
LpnPI	CCDG	5 cut(s)	84, 146, 161, 227, 293
Lsp1109I	GCAGC	5 cut(s)	160, 253, 257, 379, 382
LweI	GCATC	1 cut(s)	153
MaeII	ACGT	1 cut(s)	208
MaeIII	GTNAC	2 cut(s)	22, 349
MalI	GATC	4 cut(s)	64, 126, 261, 467
MboI	GATC	4 cut(s)	62, 124, 259, 465
MboII	GAAGA	2 cut(s)	369, 437
MluCI	AATT	5 cut(s)	46, 81, 180, 328, 518
MlyI	GAGTC	1 cut(s)	325
MnlI	CCTC	8 cut(s)	51, 82, 114, 134, 144, 308, 379, 466
Mph1103I	ATGCAT	1 cut(s)	21
MroI	TCCGGA	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	4 cut(s)	71, 133, 148, 280
MspR9I	CCNGG	2 cut(s)	71, 281
MwoI	GCNNNNNNNGC	2 cut(s)	242, 251
NciI	CCSGG	2 cut(s)	71, 281
NdeII	GATC	4 cut(s)	62, 124, 259, 465
NlaIII	CATG	2 cut(s)	19, 23
NlaIV	GGNNCC	2 cut(s)	188, 189
NmuCI	GTSAC	2 cut(s)	22, 349
NsiI	ATGCAT	1 cut(s)	21
NspI	RCATGY	1 cut(s)	23
PkrI	GCNGC	6 cut(s)	156, 175, 247, 268, 394, 397
PleI	GAGTC	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	324
PpuMI	RGGWCCY	1 cut(s)	187
Psp5II	RGGWCCY	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	188, 189
PspPI	GGNCC	1 cut(s)	187
PspPPI	RGGWCCY	1 cut(s)	187
PstI	CTGCAG	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	3 cut(s)	7, 207, 223
RsaNI	GTAC	3 cut(s)	6, 206, 222
SatI	GCNGC	6 cut(s)	155, 174, 246, 267, 393, 396
Sau3AI	GATC	4 cut(s)	62, 124, 259, 465
Sau96I	GGNCC	1 cut(s)	187
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	2 cut(s)	71, 281
SetI	ASST	8 cut(s)	120, 211, 223, 238, 268, 344, 480, 516
SfaNI	GCATC	1 cut(s)	153
SfcI	CTRYAG	1 cut(s)	174
SinI	GGWCC	1 cut(s)	187
Sse9I	AATT	5 cut(s)	46, 81, 180, 328, 518
SsiI	CCGC	1 cut(s)	154
StyD4I	CCNGG	2 cut(s)	69, 279
StyI	CCWWGG	1 cut(s)	158
TaiI	ACGT	1 cut(s)	211
TaqI	TCGA	1 cut(s)	262
TasI	AATT	5 cut(s)	46, 81, 180, 328, 518
TauI	GCSGC	1 cut(s)	157
TseFI	GTSAC	2 cut(s)	22, 349
TseI	GCWGC	5 cut(s)	173, 245, 266, 392, 395
Tsp45I	GTSAC	2 cut(s)	22, 349
TspDTI	ATGAA	2 cut(s)	321, 375
VpaK11BI	GGWCC	1 cut(s)	187
XapI	RAATTY	2 cut(s)	46, 180
XceI	RCATGY	1 cut(s)	23
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.