Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002859

Physical Location & Seq

Genomic Coordinates Forward (+)

50450217 .. 50450695

Gene Structure 479 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG306200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGAGGGGAAAAGAGAACAGAGCAAGCCGAAGGTAAGGGATCAAATCCGGTATAGAGGCATCCGGAGGCGGCCTTGGGGAAAGTATGCTGCAGAAATTCGGGACCCTACAAGAAACGGGGTACGTCGTTGGTTAGGTACATTTGACACAGCTGAACAGGCAGCAAGGGCTTATGATCGAGCTGCTTTTGGTTTCCGGGGTCGTTTAGCCATCCTCAACTTCCCAAATGAGAGTCAATACCACAATTCATCAACAAGCTCTTTTGTCACATCAACTTCGCCACCCTCATCGTCTTCCTTTTCATCTGCTGCTGCTACCATTGAAAAAAACTTTGGAAACGAAGAAAGTGGAGTTATAGAGTTTGAGTATTTAGACAATATGATCTTGGAGGAGCTTCTTGCAACACAAGAAAGTTTAGGCAAAAGAAAGGTTCAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

146

Amino Acids

16.59

Weight (kDa)

9.69

Isoelectric Point (pI)

66.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	17 - 67	6.1e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002859)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21560 FvH4_2g21561
malus_domestica	MD05G1198800.v1.1 MD10G1185000.v1.1
prunus_persica	Prupe.8G224700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0288241 RchiOBHm_Chr6g0288251 RchiOBHm_Chr6g0288261
rosa_laevigata	RLG00000012420 RLG00000012421 RLG00000012422 RLG00000017373 RLG00000017374
rosa_multiflora	Rmu_co8125528.1_g000001 Rmu_co8198010.1_g000001 Rmu_co8388259.1_g000001 Rmu_sc0001038.1_g000001 Rmu_sc0004300.1_g000010 Rmu_sc0028578.1_g000001 Rmu_sc0028578.1_g000002 Rmu_sc0042461.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180280 Rroxscaffold_7G00180290 Rroxscaffold_7G00180310
rosa_rugosa	Rorug06G0195000 Rorug06G0195100 Rorug06G0195200
rosa_samantha	Rh6AG306000 Rh6AG306100 Rh6AG306200 Rh6BG311600 Rh6BG311700 Rh6BG311800 Rh6CG319600 Rh6CG319700 Rh6DG304900 Rh6DG305000
rosa_wichuraiana	Rw6G026460 Rw6G026470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	63
AciI	CCGC	1 cut(s)	70
AclWI	GGATC	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	96
AfaI	GTAC	2 cut(s)	123, 139
AgsI	TTSAA	2 cut(s)	323, 434
AjuI	GAANNNNNNNTTGG	2 cut(s)	315, 347
AluBI	AGCT	4 cut(s)	152, 182, 258, 394
AluI	AGCT	4 cut(s)	152, 182, 258, 394
AlwI	GGATC	1 cut(s)	48
Aor13HI	TCCGGA	1 cut(s)	63
AoxI	GGCC	1 cut(s)	71
ApeKI	GCWGC	5 cut(s)	89, 161, 182, 308, 311
ApoI	RAATTY	1 cut(s)	96
AspS9I	GGNCC	1 cut(s)	103
AsuC2I	CCSGG	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	285
BbvI	GCAGC	5 cut(s)	76, 169, 173, 295, 298
BccI	CCATC	1 cut(s)	218
BcnI	CCSGG	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	90
BisI	GCNGC	6 cut(s)	71, 90, 162, 183, 309, 312
BlsI	GCNGC	6 cut(s)	72, 91, 163, 184, 310, 313
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	2 cut(s)	104, 105
BmrFI	CCNGG	1 cut(s)	197
BmsI	GCATC	1 cut(s)	69
BpiI	GAAGAC	1 cut(s)	285
BpuMI	CCSGG	1 cut(s)	197
BsaJI	CCNNGG	2 cut(s)	74, 196
BsaWI	WCCGGW	2 cut(s)	48, 63
BseAI	TCCGGA	1 cut(s)	63
BseDI	CCNNGG	2 cut(s)	74, 196
BseGI	GGATG	2 cut(s)	60, 210
BseRI	GAGGAG	1 cut(s)	404
BseXI	GCAGC	5 cut(s)	76, 169, 173, 295, 298
BshFI	GGCC	1 cut(s)	73
BsiSI	CCGG	3 cut(s)	49, 64, 196
BslFI	GGGAC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	73
Bsp13I	TCCGGA	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	40, 175, 381
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	1 cut(s)	73
BspEI	TCCGGA	1 cut(s)	63
BspLI	GGNNCC	2 cut(s)	104, 105
BspMAI	CTGCAG	1 cut(s)	94
BspPI	GGATC	1 cut(s)	48
BssECI	CCNNGG	2 cut(s)	74, 196
BssMI	GATC	3 cut(s)	40, 175, 381
BssT1I	CCWWGG	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	26
BstF5I	GGATG	2 cut(s)	60, 210
BstKTI	GATC	3 cut(s)	43, 178, 384
BstMBI	GATC	3 cut(s)	40, 175, 381
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 167
BstSCI	CCNGG	1 cut(s)	195
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	5 cut(s)	76, 169, 173, 295, 298
BstV2I	GAAGAC	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	73
BtsCI	GGATG	2 cut(s)	60, 210
Cac8I	GCNNGC	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	103
Csp6I	GTAC	2 cut(s)	122, 138
CviJI	RGCY	8 cut(s)	28, 73, 152, 170, 182, 209, 258, 394
CviKI_1	RGCY	8 cut(s)	28, 73, 152, 170, 182, 209, 258, 394
CviQI	GTAC	2 cut(s)	122, 138
DpnI	GATC	3 cut(s)	42, 177, 383
DpnII	GATC	3 cut(s)	40, 175, 381
Eco130I	CCWWGG	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	74
FaiI	YATR	5 cut(s)	54, 87, 174, 356, 380
FaqI	GGGAC	1 cut(s)	116
Fnu4HI	GCNGC	6 cut(s)	71, 90, 162, 183, 309, 312
FokI	GGATG	2 cut(s)	47, 197
Fsp4HI	GCNGC	6 cut(s)	71, 90, 162, 183, 309, 312
GluI	GCNGC	6 cut(s)	71, 90, 162, 183, 309, 312
HaeIII	GGCC	1 cut(s)	73
HapII	CCGG	3 cut(s)	49, 64, 196
HinfI	GANTC	1 cut(s)	232
HpaII	CCGG	3 cut(s)	49, 64, 196
Hpy188I	TCNGA	1 cut(s)	440
Hpy188III	TCNNGA	2 cut(s)	64, 101
Hpy99I	CGWCG	1 cut(s)	129
HpyAV	CCTTC	1 cut(s)	25
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	2 cut(s)	92, 401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 167
HpySE526I	ACGT	1 cut(s)	124
KflI	GGGWCCC	1 cut(s)	103
Kpn2I	TCCGGA	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	40, 175, 381
LmnI	GCTCC	1 cut(s)	391
LpnPI	CCDG	4 cut(s)	62, 77, 143, 209
Lsp1109I	GCAGC	5 cut(s)	76, 169, 173, 295, 298
LweI	GCATC	1 cut(s)	69
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	3 cut(s)	42, 177, 383
MboI	GATC	3 cut(s)	40, 175, 381
MboII	GAAGA	2 cut(s)	285, 353
MluCI	AATT	2 cut(s)	96, 244
MlyI	GAGTC	1 cut(s)	241
MnlI	CCTC	5 cut(s)	50, 60, 224, 295, 382
MroI	TCCGGA	1 cut(s)	63
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	3 cut(s)	49, 64, 196
MspR9I	CCNGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	2 cut(s)	158, 167
NciI	CCSGG	1 cut(s)	197
NdeII	GATC	3 cut(s)	40, 175, 381
NlaIV	GGNNCC	2 cut(s)	104, 105
NmuCI	GTSAC	1 cut(s)	265
PkrI	GCNGC	6 cut(s)	72, 91, 163, 184, 310, 313
PleI	GAGTC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	240
PpuMI	RGGWCCY	1 cut(s)	103
Psp5II	RGGWCCY	1 cut(s)	103
PspN4I	GGNNCC	2 cut(s)	104, 105
PspPI	GGNCC	1 cut(s)	103
PspPPI	RGGWCCY	1 cut(s)	103
PstI	CTGCAG	1 cut(s)	94
PvuII	CAGCTG	1 cut(s)	152
RsaI	GTAC	2 cut(s)	123, 139
RsaNI	GTAC	2 cut(s)	122, 138
SatI	GCNGC	6 cut(s)	71, 90, 162, 183, 309, 312
Sau3AI	GATC	3 cut(s)	40, 175, 381
Sau96I	GGNCC	1 cut(s)	103
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	197
SetI	ASST	8 cut(s)	36, 127, 139, 154, 184, 260, 396, 432
SfaNI	GCATC	1 cut(s)	69
SfcI	CTRYAG	1 cut(s)	90
SinI	GGWCC	1 cut(s)	103
Sse9I	AATT	2 cut(s)	96, 244
SsiI	CCGC	1 cut(s)	70
StyD4I	CCNGG	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	74
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	1 cut(s)	178
TasI	AATT	2 cut(s)	96, 244
TauI	GCSGC	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	5 cut(s)	89, 161, 182, 308, 311
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	2 cut(s)	237, 291
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.