RchiOBHm_Chr6g0288241

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002859
Physical Location & Seq
Forward (+)
51527863 .. 51528339
477 bp
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UTR
Exon/CDS
Intron
PRQ25862

Sequence Viewer

Length: 453 bp
ATGGAGGGGGAGAGAGCAGAGAGTAATGAGCGGAAGAGTAAGCAGCCCATCAAGGTGAGAGATCAGACCCGGTACAGAGGGATTCGGAGACGGCCGTGGGGTAAGTATGCGGCAGAGATTCGAGACCCTTCGAAGAATGGGGCACGTCTATGGCTAGGTACGTTTCAGACAGCGGAAGAGGCAGCGAGGGCTTATGATCGAGCTGCTTTTGGCTTTCGGGGTCATTTGGCCATCCTCAACTTCCCGAATGAGTACCAATATCACAATCCATCAACCAGCTCTTTCGTTACATCAAATTCTGTTTCTTCTTCATCATCAACATCATCTAATTCATTTTCTTCTGCTCCTGCTGATGGTGGAATGGATTTTGGAAATAAAGAAGGTCCAGTGATAGAGTTTGAGTACCTGGACAATATGGTGTTGGAGGAGCTTCTGGAAGAGCAAAAGAAGTAA

Protein Analysis

150

Amino Acids

16.94

Weight (kDa)

6.76

Isoelectric Point (pI)

51.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 23 - 74 9.5e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 31
AciI CCGC 3 cut(s) 31, 110, 173
AcoI YGGCCR 2 cut(s) 92, 228
AcsI RAATTY 1 cut(s) 295
AfaI GTAC 4 cut(s) 74, 160, 254, 404
AfiI CCNNNNNNNGG 1 cut(s) 353
AjiI CACGTC 1 cut(s) 146
AjnI CCWGG 1 cut(s) 405
AluBI AGCT 3 cut(s) 203, 279, 430
AluI AGCT 3 cut(s) 203, 279, 430
Alw26I GTCTC 2 cut(s) 82, 117
AoxI GGCC 2 cut(s) 92, 228
ApeKI GCWGC 3 cut(s) 43, 182, 203
ApoI RAATTY 1 cut(s) 295
AspS9I GGNCC 1 cut(s) 383
AsuC2I CCSGG 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 67
AsuII TTCGAA 1 cut(s) 131
AvaII GGWCC 1 cut(s) 383
BaeGI GKGCMC 1 cut(s) 145
BalI TGGCCA 1 cut(s) 230
BbvI GCAGC 3 cut(s) 55, 190, 194
BccI CCATC 4 cut(s) 56, 239, 277, 347
BceAI ACGGC 2 cut(s) 79, 107
BciT130I CCWGG 1 cut(s) 407
BcnI CCSGG 1 cut(s) 70
BcoDI GTCTC 2 cut(s) 82, 117
BfaI CTAG 1 cut(s) 155
BisI GCNGC 4 cut(s) 44, 111, 183, 204
BlsI GCNGC 4 cut(s) 45, 112, 184, 205
Bme1390I CCNGG 2 cut(s) 70, 407
Bme18I GGWCC 1 cut(s) 383
BmgBI CACGTC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 383
BmrFI CCNGG 2 cut(s) 70, 407
Bpu14I TTCGAA 1 cut(s) 131
BpuMI CCSGG 1 cut(s) 70
BsaI GGTCTC 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse1I ACTGG 1 cut(s) 386
BseBI CCWGG 1 cut(s) 407
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 1 cut(s) 231
BseLI CCNNNNNNNGG 1 cut(s) 353
BseNI ACTGG 1 cut(s) 386
BseRI GAGGAG 1 cut(s) 440
BseSI GKGCMC 1 cut(s) 145
BseX3I CGGCCG 1 cut(s) 92
BseXI GCAGC 3 cut(s) 55, 190, 194
Bsh1285I CGRYCG 1 cut(s) 95
BshFI GGCC 2 cut(s) 94, 230
BsiEI CGRYCG 1 cut(s) 95
BsiSI CCGG 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 353
BsmAI GTCTC 2 cut(s) 82, 117
BsmBI CGTCTC 1 cut(s) 82
BsnI GGCC 2 cut(s) 94, 230
Bso31I GGTCTC 1 cut(s) 117
Bsp119I TTCGAA 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 145
Bsp143I GATC 2 cut(s) 61, 196
BspACI CCGC 3 cut(s) 31, 110, 173
BspANI GGCC 2 cut(s) 94, 230
BspQI GCTCTTC 1 cut(s) 432
BspT104I TTCGAA 1 cut(s) 131
BspTNI GGTCTC 1 cut(s) 117
BsrBI CCGCTC 1 cut(s) 31
BsrI ACTGG 1 cut(s) 386
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 2 cut(s) 61, 196
Bst2UI CCWGG 1 cut(s) 407
Bst6I CTCTTC 3 cut(s) 29, 171, 432
BstBI TTCGAA 1 cut(s) 131
BstDSI CCRYGG 1 cut(s) 95
BstF5I GGATG 1 cut(s) 231
BstKTI GATC 2 cut(s) 64, 199
BstMAI GTCTC 2 cut(s) 82, 117
BstMBI GATC 2 cut(s) 61, 196
BstMCI CGRYCG 1 cut(s) 95
BstMWI GCNNNNNNNGC 2 cut(s) 179, 188
BstNI CCWGG 1 cut(s) 407
BstSCI CCNGG 2 cut(s) 68, 405
BstSLI GKGCMC 1 cut(s) 145
BstV1I GCAGC 3 cut(s) 55, 190, 194
BstZI CGGCCG 1 cut(s) 92
BsuRI GGCC 2 cut(s) 94, 230
BtgI CCRYGG 1 cut(s) 95
BtrI CACGTC 1 cut(s) 146
BtsCI GGATG 1 cut(s) 231
BtsIMutI CAGTG 1 cut(s) 393
Cfr13I GGNCC 1 cut(s) 383
Csp6I GTAC 4 cut(s) 73, 159, 253, 403
CviJI RGCY 9 cut(s) 46, 94, 154, 191, 203, 213, 230, 279, 430
CviKI_1 RGCY 9 cut(s) 46, 94, 154, 191, 203, 213, 230, 279, 430
CviQI GTAC 4 cut(s) 73, 159, 253, 403
DpnI GATC 2 cut(s) 63, 198
DpnII GATC 2 cut(s) 61, 196
EaeI YGGCCR 2 cut(s) 92, 228
EagI CGGCCG 1 cut(s) 92
Eam1104I CTCTTC 3 cut(s) 29, 171, 432
EarI CTCTTC 3 cut(s) 29, 171, 432
EclXI CGGCCG 1 cut(s) 92
Eco31I GGTCTC 1 cut(s) 117
Eco47I GGWCC 1 cut(s) 383
Eco52I CGGCCG 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 405
Esp3I CGTCTC 1 cut(s) 82
FaiI YATR 4 cut(s) 108, 151, 195, 416
Fnu4HI GCNGC 4 cut(s) 44, 111, 183, 204
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 4 cut(s) 44, 111, 183, 204
FspBI CTAG 1 cut(s) 155
GluI GCNGC 4 cut(s) 44, 111, 183, 204
HaeIII GGCC 2 cut(s) 94, 230
HapII CCGG 1 cut(s) 70
HinfI GANTC 2 cut(s) 82, 118
HpaII CCGG 1 cut(s) 70
HphI GGTGA 1 cut(s) 67
Hpy188I TCNGA 3 cut(s) 66, 87, 168
Hpy188III TCNNGA 3 cut(s) 122, 244, 434
HpyAV CCTTC 2 cut(s) 138, 374
HpyCH4IV ACGT 2 cut(s) 145, 161
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 188
HpySE526I ACGT 2 cut(s) 145, 161
Kzo9I GATC 2 cut(s) 61, 196
LguI GCTCTTC 1 cut(s) 432
LmnI GCTCC 2 cut(s) 349, 427
LpnPI CCDG 7 cut(s) 83, 289, 360, 392, 399, 419, 419
Lsp1109I GCAGC 3 cut(s) 55, 190, 194
MaeI CTAG 1 cut(s) 155
MaeII ACGT 2 cut(s) 145, 161
MaeIII GTNAC 1 cut(s) 286
MalI GATC 2 cut(s) 63, 198
MbiI CCGCTC 1 cut(s) 31
MboI GATC 2 cut(s) 61, 196
MboII GAAGA 7 cut(s) 46, 145, 188, 297, 300, 330, 449
MhlI GDGCHC 1 cut(s) 145
MlsI TGGCCA 1 cut(s) 230
MluCI AATT 2 cut(s) 295, 328
MluNI TGGCCA 1 cut(s) 230
MmeI TCCRAC 1 cut(s) 402
MnlI CCTC 5 cut(s) 71, 172, 180, 245, 418
Mox20I TGGCCA 1 cut(s) 230
MscI TGGCCA 1 cut(s) 230
MslI CAYNNNNRTG 2 cut(s) 53, 148
Msp20I TGGCCA 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 1 cut(s) 70
MspR9I CCNGG 2 cut(s) 70, 407
MvaI CCWGG 1 cut(s) 407
MwoI GCNNNNNNNGC 2 cut(s) 179, 188
NciI CCSGG 1 cut(s) 70
NdeII GATC 2 cut(s) 61, 196
NspV TTCGAA 1 cut(s) 131
PciSI GCTCTTC 1 cut(s) 432
PfeI GAWTC 2 cut(s) 82, 118
PkrI GCNGC 4 cut(s) 45, 112, 184, 205
Psp6I CCWGG 1 cut(s) 405
PspGI CCWGG 1 cut(s) 405
PspPI GGNCC 1 cut(s) 383
RsaI GTAC 4 cut(s) 74, 160, 254, 404
RsaNI GTAC 4 cut(s) 73, 159, 253, 403
RseI CAYNNNNRTG 2 cut(s) 53, 148
SapI GCTCTTC 1 cut(s) 432
SatI GCNGC 4 cut(s) 44, 111, 183, 204
Sau3AI GATC 2 cut(s) 61, 196
Sau96I GGNCC 1 cut(s) 383
ScrFI CCNGG 2 cut(s) 70, 407
SduI GDGCHC 1 cut(s) 145
SetI ASST 9 cut(s) 57, 148, 160, 164, 205, 281, 385, 408, 432
SfuI TTCGAA 1 cut(s) 131
SinI GGWCC 1 cut(s) 383
SmiMI CAYNNNNRTG 2 cut(s) 53, 148
Sse9I AATT 2 cut(s) 295, 328
SsiI CCGC 3 cut(s) 31, 110, 173
SspMI CTAG 1 cut(s) 155
StyD4I CCNGG 2 cut(s) 68, 405
TaiI ACGT 2 cut(s) 148, 164
TaqI TCGA 3 cut(s) 121, 131, 199
TasI AATT 2 cut(s) 295, 328
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 2 cut(s) 82, 118
TscAI CASTG 1 cut(s) 393
TseI GCWGC 3 cut(s) 43, 182, 203
TspDTI ATGAA 2 cut(s) 300, 321
TspRI CASTG 1 cut(s) 393
VpaK11BI GGWCC 1 cut(s) 383
XapI RAATTY 1 cut(s) 295
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.