Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002859

Physical Location & Seq

Genomic Coordinates Forward (+)

31573606 .. 31585446

Gene Structure 11841 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0195200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGAATGTTGGGGAACAACCTACCTCCTGCAACAGAGGTCGTCAATCTCTACAAAAAAATATGGCATTGGAAAGATGAGGTTGTTCGATCCTAACCCCGCCGCCCTCCAAGCTCTCAGGGGTAACCAAATCCGTGTCACTCTTGGCATACGAAACGAAGACTTGTCCAACCTCGCTGCAAGTCCAGATGCCATGAACTCATGGTTCAAAACCAATGTTGAGCCTTACCTTAATGACATCACCTTCGAATGCATCTCTGCTGGTAATGAGGTTATTCCCGGACCTTTGGGTGGGTACGTTTTGCCCGTAATGCAGTCTCTACAAAACATTCTCAATGCTAAGAACCTAGCTACTCGTATTAAGGTGTCAACAGTTGTGCCAGGAACTGTTTTGGGGGCTTCATATCCGCCTTCAAGTGGTGCATTTACAGCAGATACACGTGATGTTATGAGTGGCATTCTTGCGTTCTTGTCTAGACAAGGATCGCCTCTTTTGATCAATGTGTATCCCTATTTTGCTTATGTATCTGACCCTGTAAATGTTAGATTGGATTATGCTCAATTTACTGCAACAAGTCCTGGGGCCATAGATGGAAATTTGAACTACTTTAACTTGTTTGACGCCTTGGTTGATGCCTTTTTCTCAGCTATGGAGAAAGTAGGCGTGCCGAATGTGAACGTTGTTGTGACCGAGAGTGGATGGCCATCCGACGGGAATGGAGATTTCACCACCCCACAACTCGCAGCGACGTACAACAAAAATTTCTTGCGACATATCAGCTCAAAAAAGGGGACACCGAAAAGACCAAATGCTTCCATTGAAGGGTATATATTTGCTATGTTCAATGAGAATCAGAAACCTAATGGTGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

291

Amino Acids

31.7

Weight (kDa)

5.94

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	15 - 289	7.5e-73	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002859)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21560 FvH4_2g21561
malus_domestica	MD05G1198800.v1.1 MD10G1185000.v1.1
prunus_persica	Prupe.8G224700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0288241 RchiOBHm_Chr6g0288251 RchiOBHm_Chr6g0288261
rosa_laevigata	RLG00000012420 RLG00000012421 RLG00000012422 RLG00000017373 RLG00000017374
rosa_multiflora	Rmu_co8125528.1_g000001 Rmu_co8198010.1_g000001 Rmu_co8388259.1_g000001 Rmu_sc0001038.1_g000001 Rmu_sc0004300.1_g000010 Rmu_sc0028578.1_g000001 Rmu_sc0028578.1_g000002 Rmu_sc0042461.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180280 Rroxscaffold_7G00180290 Rroxscaffold_7G00180310
rosa_rugosa	Rorug06G0195000 Rorug06G0195100 Rorug06G0195200
rosa_samantha	Rh6AG306000 Rh6AG306100 Rh6AG306200 Rh6BG311600 Rh6BG311700 Rh6BG311800 Rh6CG319600 Rh6CG319700 Rh6DG304900 Rh6DG305000
rosa_wichuraiana	Rw6G026460 Rw6G026470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	99, 102, 407
AclI	AACGTT	1 cut(s)	678
AclWI	GGATC	2 cut(s)	83, 490
AcoI	YGGCCR	1 cut(s)	701
AcsI	RAATTY	2 cut(s)	595, 760
AcvI	CACGTG	1 cut(s)	440
AcyI	GRCGYC	1 cut(s)	621
AfaI	GTAC	2 cut(s)	296, 752
AfiI	CCNNNNNNNGG	4 cut(s)	290, 416, 710, 822
AflIII	ACRYGT	1 cut(s)	437
AgsI	TTSAA	5 cut(s)	208, 414, 601, 821, 844
AjnI	CCWGG	2 cut(s)	379, 577
AluBI	AGCT	4 cut(s)	113, 350, 647, 780
AluI	AGCT	4 cut(s)	113, 350, 647, 780
Alw26I	GTCTC	1 cut(s)	321
AlwI	GGATC	2 cut(s)	83, 490
AlwNI	CAGNNNCTG	1 cut(s)	386
AoxI	GGCC	2 cut(s)	582, 701
ApeKI	GCWGC	2 cut(s)	176, 743
ApoI	RAATTY	2 cut(s)	595, 760
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
AspS9I	GGNCC	2 cut(s)	281, 582
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	2 cut(s)	232, 718
AsuII	TTCGAA	1 cut(s)	246
AvaII	GGWCC	1 cut(s)	281
BalI	TGGCCA	1 cut(s)	703
BbrPI	CACGTG	1 cut(s)	440
BbsI	GAAGAC	1 cut(s)	165
BbvI	GCAGC	2 cut(s)	163, 755
BccI	CCATC	3 cut(s)	584, 693, 712
BciT130I	CCWGG	2 cut(s)	381, 579
BciVI	GTATCC	1 cut(s)	516
BclI	TGATCA	1 cut(s)	495
BcnI	CCSGG	1 cut(s)	279
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	2 cut(s)	347, 474
BfuI	GTATCC	1 cut(s)	516
BisI	GCNGC	3 cut(s)	102, 177, 744
BlsI	GCNGC	3 cut(s)	103, 178, 745
Bme1390I	CCNGG	3 cut(s)	279, 381, 579
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	2 cut(s)	281, 582
BmiI	GGNNCC	1 cut(s)	583
BmrFI	CCNGG	3 cut(s)	279, 381, 579
BmsI	GCATC	3 cut(s)	178, 261, 622
BpiI	GAAGAC	1 cut(s)	165
Bpu14I	TTCGAA	1 cut(s)	246
BpuMI	CCSGG	1 cut(s)	279
BsaAI	YACGTR	1 cut(s)	440
BsaBI	GATNNNNATC	1 cut(s)	703
BsaHI	GRCGYC	1 cut(s)	621
BsaJI	CCNNGG	2 cut(s)	578, 624
Bsc4I	CCNNNNNNNGG	4 cut(s)	290, 416, 710, 822
Bse8I	GATNNNNATC	1 cut(s)	703
BseBI	CCWGG	2 cut(s)	381, 579
BseDI	CCNNGG	2 cut(s)	578, 624
BseGI	GGATG	2 cut(s)	704, 704
BseJI	GATNNNNATC	1 cut(s)	703
BseLI	CCNNNNNNNGG	4 cut(s)	290, 416, 710, 822
BseMII	CTCAG	2 cut(s)	130, 657
BseXI	GCAGC	2 cut(s)	163, 755
BshFI	GGCC	2 cut(s)	584, 703
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	805
BslI	CCNNNNNNNGG	4 cut(s)	290, 416, 710, 822
BsmAI	GTCTC	1 cut(s)	321
BsmFI	GGGAC	1 cut(s)	805
BsmI	GAATGC	2 cut(s)	254, 456
BsnI	GGCC	2 cut(s)	584, 703
Bsp119I	TTCGAA	1 cut(s)	246
Bsp143I	GATC	3 cut(s)	88, 482, 495
BspACI	CCGC	3 cut(s)	99, 102, 407
BspANI	GGCC	2 cut(s)	584, 703
BspCNI	CTCAG	2 cut(s)	129, 656
BspLI	GGNNCC	1 cut(s)	583
BspPI	GGATC	2 cut(s)	83, 490
BspT104I	TTCGAA	1 cut(s)	246
BssECI	CCNNGG	2 cut(s)	578, 624
BssMI	GATC	3 cut(s)	88, 482, 495
BssNI	GRCGYC	1 cut(s)	621
BssT1I	CCWWGG	1 cut(s)	624
Bst2UI	CCWGG	2 cut(s)	381, 579
Bst4CI	ACNGT	2 cut(s)	373, 388
Bst6I	CTCTTC	1 cut(s)	864
BstACI	GRCGYC	1 cut(s)	621
BstBAI	YACGTR	1 cut(s)	440
BstBI	TTCGAA	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	665
BstDEI	CTNAG	3 cut(s)	116, 339, 643
BstEII	GGTNACC	1 cut(s)	122
BstF5I	GGATG	2 cut(s)	704, 704
BstKTI	GATC	3 cut(s)	91, 485, 498
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	3 cut(s)	88, 482, 495
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 310, 428
BstNI	CCWGG	2 cut(s)	381, 579
BstPI	GGTNACC	1 cut(s)	122
BstSCI	CCNGG	3 cut(s)	277, 379, 577
BstV1I	GCAGC	2 cut(s)	163, 755
BstV2I	GAAGAC	1 cut(s)	165
BsuI	GTATCC	1 cut(s)	516
BsuRI	GGCC	2 cut(s)	584, 703
BtsCI	GGATG	2 cut(s)	704, 704
Cac8I	GCNNGC	1 cut(s)	665
CaiI	CAGNNNCTG	1 cut(s)	386
Cfr13I	GGNCC	2 cut(s)	281, 582
CseI	GACGC	1 cut(s)	629
Csp6I	GTAC	2 cut(s)	295, 751
CviAII	CATG	2 cut(s)	193, 201
CviJI	RGCY	8 cut(s)	113, 223, 350, 398, 584, 647, 703, 780
CviKI_1	RGCY	8 cut(s)	113, 223, 350, 398, 584, 647, 703, 780
CviQI	GTAC	2 cut(s)	295, 751
DdeI	CTNAG	3 cut(s)	116, 339, 643
DpnI	GATC	3 cut(s)	90, 484, 497
DpnII	GATC	3 cut(s)	88, 482, 495
EaeI	YGGCCR	1 cut(s)	701
Eam1104I	CTCTTC	1 cut(s)	864
EarI	CTCTTC	1 cut(s)	864
EciI	GGCGGA	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	624
Eco47I	GGWCC	1 cut(s)	281
Eco72I	CACGTG	1 cut(s)	440
Eco91I	GGTNACC	1 cut(s)	122
EcoO65I	GGTNACC	1 cut(s)	122
EcoRII	CCWGG	2 cut(s)	379, 577
EcoT14I	CCWWGG	1 cut(s)	624
EcoT22I	ATGCAT	1 cut(s)	254
ErhI	CCWWGG	1 cut(s)	624
FaeI	CATG	2 cut(s)	196, 204
FaqI	GGGAC	1 cut(s)	805
FatI	CATG	2 cut(s)	192, 200
FauI	CCCGC	1 cut(s)	106
FbaI	TGATCA	1 cut(s)	495
Fnu4HI	GCNGC	3 cut(s)	102, 177, 744
FokI	GGATG	2 cut(s)	691, 711
Fsp4HI	GCNGC	3 cut(s)	102, 177, 744
FspBI	CTAG	2 cut(s)	347, 474
GluI	GCNGC	3 cut(s)	102, 177, 744
HaeIII	GGCC	2 cut(s)	584, 703
HapII	CCGG	1 cut(s)	279
HgaI	GACGC	1 cut(s)	629
Hin1I	GRCGYC	1 cut(s)	621
Hin1II	CATG	2 cut(s)	196, 204
HincII	GTYRAC	1 cut(s)	369
HindII	GTYRAC	1 cut(s)	369
HinfI	GANTC	1 cut(s)	850
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	2 cut(s)	232, 718
Hpy166II	GTNNAC	2 cut(s)	369, 676
Hpy188I	TCNGA	3 cut(s)	529, 709, 855
Hpy188III	TCNNGA	2 cut(s)	185, 474
Hpy8I	GTNNAC	2 cut(s)	369, 676
Hpy99I	CGWCG	2 cut(s)	713, 751
HpyAV	CCTTC	3 cut(s)	253, 420, 815
HpyCH4III	ACNGT	2 cut(s)	373, 388
HpyCH4IV	ACGT	4 cut(s)	297, 439, 678, 749
HpyCH4V	TGCA	6 cut(s)	31, 179, 252, 313, 422, 569
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 310, 428
HpyF3I	CTNAG	3 cut(s)	116, 339, 643
HpySE526I	ACGT	4 cut(s)	297, 439, 678, 749
Hsp92I	GRCGYC	1 cut(s)	621
Hsp92II	CATG	2 cut(s)	196, 204
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	3 cut(s)	88, 482, 495
Lsp1109I	GCAGC	2 cut(s)	163, 755
LweI	GCATC	3 cut(s)	178, 261, 622
MaeI	CTAG	2 cut(s)	347, 474
MaeII	ACGT	4 cut(s)	297, 439, 678, 749
MaeIII	GTNAC	3 cut(s)	122, 136, 685
MalI	GATC	3 cut(s)	90, 484, 497
MboI	GATC	3 cut(s)	88, 482, 495
MboII	GAAGA	1 cut(s)	170
MlsI	TGGCCA	1 cut(s)	703
MluCI	AATT	3 cut(s)	560, 595, 760
MluNI	TGGCCA	1 cut(s)	703
MmeI	TCCRAC	2 cut(s)	192, 732
MnlI	CCTC	7 cut(s)	30, 35, 72, 116, 182, 262, 498
Mox20I	TGGCCA	1 cut(s)	703
Mph1103I	ATGCAT	1 cut(s)	254
MscI	TGGCCA	1 cut(s)	703
MseI	TTAA	3 cut(s)	231, 360, 609
Msp20I	TGGCCA	1 cut(s)	703
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	3 cut(s)	279, 381, 579
Mva1269I	GAATGC	2 cut(s)	254, 456
MvaI	CCWGG	2 cut(s)	381, 579
MwoI	GCNNNNNNNGC	3 cut(s)	110, 310, 428
NciI	CCSGG	1 cut(s)	279
NdeII	GATC	3 cut(s)	88, 482, 495
NlaIII	CATG	2 cut(s)	196, 204
NlaIV	GGNNCC	1 cut(s)	583
NmuCI	GTSAC	2 cut(s)	136, 685
NsiI	ATGCAT	1 cut(s)	254
NspV	TTCGAA	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PctI	GAATGC	2 cut(s)	254, 456
PfeI	GAWTC	1 cut(s)	850
PfoI	TCCNGGA	1 cut(s)	277
PkrI	GCNGC	3 cut(s)	103, 178, 745
PmaCI	CACGTG	1 cut(s)	440
PmlI	CACGTG	1 cut(s)	440
Ppu21I	YACGTR	1 cut(s)	440
Psp1406I	AACGTT	1 cut(s)	678
Psp6I	CCWGG	2 cut(s)	379, 577
PspCI	CACGTG	1 cut(s)	440
PspEI	GGTNACC	1 cut(s)	122
PspGI	CCWGG	2 cut(s)	379, 577
PspN4I	GGNNCC	1 cut(s)	583
PspPI	GGNCC	2 cut(s)	281, 582
PstNI	CAGNNNCTG	1 cut(s)	386
RsaI	GTAC	2 cut(s)	296, 752
RsaNI	GTAC	2 cut(s)	295, 751
SaqAI	TTAA	3 cut(s)	231, 360, 609
SatI	GCNGC	3 cut(s)	102, 177, 744
Sau3AI	GATC	3 cut(s)	88, 482, 495
Sau96I	GGNCC	2 cut(s)	281, 582
ScrFI	CCNGG	3 cut(s)	279, 381, 579
SfaNI	GCATC	3 cut(s)	178, 261, 622
SfuI	TTCGAA	1 cut(s)	246
SinI	GGWCC	1 cut(s)	281
Sse9I	AATT	3 cut(s)	560, 595, 760
SsiI	CCGC	3 cut(s)	99, 102, 407
SspMI	CTAG	2 cut(s)	347, 474
StyD4I	CCNGG	3 cut(s)	277, 379, 577
StyI	CCWWGG	1 cut(s)	624
TaaI	ACNGT	2 cut(s)	373, 388
TaiI	ACGT	4 cut(s)	300, 442, 681, 752
TaqI	TCGA	2 cut(s)	87, 246
TaqII	GACCGA	1 cut(s)	704
TasI	AATT	3 cut(s)	560, 595, 760
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	1 cut(s)	850
Tru1I	TTAA	3 cut(s)	231, 360, 609
Tru9I	TTAA	3 cut(s)	231, 360, 609
TseFI	GTSAC	2 cut(s)	136, 685
TseI	GCWGC	2 cut(s)	176, 743
Tsp45I	GTSAC	2 cut(s)	136, 685
TspDTI	ATGAA	2 cut(s)	209, 390
TspGWI	ACGGA	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	281
XapI	RAATTY	2 cut(s)	595, 760
XbaI	TCTAGA	1 cut(s)	473
XspI	CTAG	2 cut(s)	347, 474
Zsp2I	ATGCAT	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.