Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002859

Physical Location & Seq

Genomic Coordinates Forward (+)

27913175 .. 27913672

Gene Structure 498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1185000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGAGGGGAAGAGAGGACCGGAGAATAATAACCAGCAGAAAGAACCGAAGGCACGAGGTCAAAACCGATATAGAGGGATTCGGAAGCGGCCATGGGGTAAGTTTGCAGCTGAAATTCGTGACCCTTCGAGAAATGGAGCACGGCTATGGCTAGGCACATTTGAGACAGCTGAGGAGGCAGCAAGGGCTTATGACCGAGCTGCTTTCGGCTTTCGGGGCCATTTAGCCATACTCAACTTTCCAAATGACTACCAATACCACAACCCTTCAAGCTCTTTGAGCACTTTATGTTCGTCTTCATCTTCTGCTTCTTCATCTTCATTTTCAAGTGTTGATCCTGGAAGGAGTATTAATTTTGGAAGAGGCCAAGAAGAAGACAAAGTTATTGAGTTTGAGTATTTGGACAACAATGTCTTGGAGGAGCTTCTTGATACAAAAGAAGATCATTATAGGCAGGGGCAACCAACACATTATGGAAAAAAATTCACTGATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

166

Amino Acids

18.76

Weight (kDa)

7.86

Isoelectric Point (pI)

50.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	23 - 73	3.5e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002859)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21560 FvH4_2g21561
malus_domestica	MD05G1198800.v1.1 MD10G1185000.v1.1
prunus_persica	Prupe.8G224700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0288241 RchiOBHm_Chr6g0288251 RchiOBHm_Chr6g0288261
rosa_laevigata	RLG00000012420 RLG00000012421 RLG00000012422 RLG00000017373 RLG00000017374
rosa_multiflora	Rmu_co8125528.1_g000001 Rmu_co8198010.1_g000001 Rmu_co8388259.1_g000001 Rmu_sc0001038.1_g000001 Rmu_sc0004300.1_g000010 Rmu_sc0028578.1_g000001 Rmu_sc0028578.1_g000002 Rmu_sc0042461.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180280 Rroxscaffold_7G00180290 Rroxscaffold_7G00180310
rosa_rugosa	Rorug06G0195000 Rorug06G0195100 Rorug06G0195200
rosa_samantha	Rh6AG306000 Rh6AG306100 Rh6AG306200 Rh6BG311600 Rh6BG311700 Rh6BG311800 Rh6CG319600 Rh6CG319700 Rh6DG304900 Rh6DG305000
rosa_wichuraiana	Rw6G026460 Rw6G026470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	410
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	1 cut(s)	329
AcoI	YGGCCR	1 cut(s)	89
AcsI	RAATTY	2 cut(s)	114, 482
AgsI	TTSAA	2 cut(s)	270, 327
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	5 cut(s)	110, 170, 200, 273, 424
AluI	AGCT	5 cut(s)	110, 170, 200, 273, 424
Alw21I	GWGCWC	2 cut(s)	142, 284
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	1 cut(s)	329
AoxI	GGCC	3 cut(s)	89, 217, 364
ApeKI	GCWGC	3 cut(s)	107, 179, 200
ApoI	RAATTY	2 cut(s)	114, 482
AseI	ATTAAT	1 cut(s)	351
AspS9I	GGNCC	2 cut(s)	17, 217
AvaII	GGWCC	1 cut(s)	17
BauI	CACGAG	1 cut(s)	54
BbsI	GAAGAC	2 cut(s)	288, 381
Bbv12I	GWGCWC	2 cut(s)	142, 284
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	3 cut(s)	119, 187, 191
BceAI	ACGGC	1 cut(s)	158
BciT130I	CCWGG	1 cut(s)	339
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	1 cut(s)	152
BisI	GCNGC	4 cut(s)	89, 108, 180, 201
BlsI	GCNGC	4 cut(s)	90, 109, 181, 202
Bme1390I	CCNGG	1 cut(s)	339
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	2 cut(s)	17, 217
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	1 cut(s)	339
BpiI	GAAGAC	2 cut(s)	288, 381
Bpu10I	CCTNAGC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	92
BsaWI	WCCGGW	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	92
BseMII	CTCAG	1 cut(s)	162
BseRI	GAGGAG	2 cut(s)	188, 434
BseXI	GCAGC	3 cut(s)	119, 187, 191
BshFI	GGCC	3 cut(s)	91, 219, 366
BsiHKAI	GWGCWC	2 cut(s)	142, 284
BsiSI	CCGG	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	158
BsnI	GGCC	3 cut(s)	91, 219, 366
Bsp1286I	GDGCHC	2 cut(s)	142, 284
Bsp143I	GATC	2 cut(s)	334, 442
Bsp19I	CCATGG	1 cut(s)	92
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	3 cut(s)	91, 219, 366
BspCNI	CTCAG	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	218
BspPI	GGATC	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	92
BssMI	GATC	2 cut(s)	334, 442
BssSI	CACGAG	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	92
Bst2BI	CACGAG	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	339
Bst6I	CTCTTC	2 cut(s)	5, 355
BstDEI	CTNAG	1 cut(s)	171
BstDSI	CCRYGG	1 cut(s)	92
BstKTI	GATC	2 cut(s)	337, 445
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	2 cut(s)	334, 442
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 185, 216, 279
BstNI	CCWGG	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	337
BstV1I	GCAGC	3 cut(s)	119, 187, 191
BstV2I	GAAGAC	2 cut(s)	288, 381
BsuRI	GGCC	3 cut(s)	91, 219, 366
BtgI	CCRYGG	1 cut(s)	92
BtsIMutI	CAGTG	1 cut(s)	486
Cfr13I	GGNCC	2 cut(s)	17, 217
CviAII	CATG	1 cut(s)	93
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	2 cut(s)	336, 444
DpnII	GATC	2 cut(s)	334, 442
DrdI	GACNNNNNNGTC	1 cut(s)	410
DseDI	GACNNNNNNGTC	1 cut(s)	410
EaeI	YGGCCR	1 cut(s)	89
Eam1104I	CTCTTC	2 cut(s)	5, 355
EarI	CTCTTC	2 cut(s)	5, 355
Eco130I	CCWWGG	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	92
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	1 cut(s)	96
FaiI	YATR	8 cut(s)	72, 94, 148, 192, 230, 289, 450, 474
FatI	CATG	1 cut(s)	92
Fnu4HI	GCNGC	4 cut(s)	89, 108, 180, 201
Fsp4HI	GCNGC	4 cut(s)	89, 108, 180, 201
FspBI	CTAG	1 cut(s)	152
GluI	GCNGC	4 cut(s)	89, 108, 180, 201
HaeIII	GGCC	3 cut(s)	91, 219, 366
HapII	CCGG	1 cut(s)	20
Hin1II	CATG	1 cut(s)	96
HinfI	GANTC	1 cut(s)	79
HpaII	CCGG	1 cut(s)	20
Hpy188I	TCNGA	1 cut(s)	84
Hpy188III	TCNNGA	3 cut(s)	119, 129, 428
HpyAV	CCTTC	4 cut(s)	43, 135, 276, 336
HpyCH4V	TGCA	1 cut(s)	107
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 185, 216, 279
HpyF3I	CTNAG	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	96
Kzo9I	GATC	2 cut(s)	334, 442
LmnI	GCTCC	2 cut(s)	137, 421
LpnPI	CCDG	5 cut(s)	33, 47, 324, 351, 440
Lsp1109I	GCAGC	3 cut(s)	119, 187, 191
MaeI	CTAG	1 cut(s)	152
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	2 cut(s)	336, 444
MboI	GATC	2 cut(s)	334, 442
MboII	GAAGA	9 cut(s)	22, 288, 294, 303, 309, 372, 383, 386, 452
MhlI	GDGCHC	2 cut(s)	142, 284
MluCI	AATT	3 cut(s)	114, 352, 482
MnlI	CCTC	7 cut(s)	8, 50, 68, 166, 169, 356, 412
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	145
MspA1I	CMGCKG	2 cut(s)	110, 170
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	4 cut(s)	176, 185, 216, 279
NcoI	CCATGG	1 cut(s)	92
NdeII	GATC	2 cut(s)	334, 442
NlaIII	CATG	1 cut(s)	96
NlaIV	GGNNCC	1 cut(s)	218
NmuCI	GTSAC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	79
PfoI	TCCNGGA	1 cut(s)	337
PkrI	GCNGC	4 cut(s)	90, 109, 181, 202
PshBI	ATTAAT	1 cut(s)	351
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	218
PspPI	GGNCC	2 cut(s)	17, 217
PvuII	CAGCTG	2 cut(s)	110, 170
RseI	CAYNNNNRTG	1 cut(s)	145
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	4 cut(s)	89, 108, 180, 201
Sau3AI	GATC	2 cut(s)	334, 442
Sau96I	GGNCC	2 cut(s)	17, 217
ScrFI	CCNGG	1 cut(s)	339
SduI	GDGCHC	2 cut(s)	142, 284
SetI	ASST	6 cut(s)	61, 112, 172, 202, 275, 426
SinI	GGWCC	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	145
Sse9I	AATT	3 cut(s)	114, 352, 482
SsiI	CCGC	1 cut(s)	88
SspMI	CTAG	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	337
StyI	CCWWGG	1 cut(s)	92
TaqI	TCGA	1 cut(s)	128
TaqII	GACCGA	1 cut(s)	210
TasI	AATT	3 cut(s)	114, 352, 482
TauI	GCSGC	1 cut(s)	91
TfiI	GAWTC	1 cut(s)	79
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	3 cut(s)	107, 179, 200
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	3 cut(s)	288, 303, 309
TspRI	CASTG	1 cut(s)	493
VpaK11BI	GGWCC	1 cut(s)	17
VspI	ATTAAT	1 cut(s)	351
XapI	RAATTY	2 cut(s)	114, 482
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.