Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002859

Physical Location & Seq

Genomic Coordinates Forward (+)

50428814 .. 50430146

Gene Structure 1333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG306000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGAGGGGGAGAGAGCAGAGAGTAATGAACGGAAGAGTAAGCAGCCCATCAAGGTGAGAGATCAGACCCGGTACAGAGGGATTCGGAGACGGCCGTGGGGGAAGTATGCGGCAGAGATTCGAGACCCTTCGAGGAATGGGGCACGTCTATGGCTAGGTACGTTTGAGACGGCGGAAGAGGCAGCGAGGGCTTATGATCGAGCTGCTTTTGGCTTTCGGGGTCATTTGGCCATCCTCAACTTCCCGAATGAGTACCAATATCACAATCCATCAACCAGCTCTTTCGTTACATCAAATTCTGTTTCTTCTTCATCATCAACAACATCTAATTCATTTTCTTCTGCTCCTGCTGATGGTGGAATGGATTTTGGAAATAAAGAAGGTCCAGTGATAGAATTTGAGTACCTGGACAATATGGTGTTGGAGGAGCTTCTGGAAGAGCAAAAGAATTTGATATTCGGATTGCTGATGAGGATGCCGGCGGAGGCAAGGTTGTCGACGGCGGCAGGGGTAGCAAGGAGCCAAGGATCTCAACGATGGCTGTGCAATAGAGGAGTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

187

Amino Acids

21.01

Weight (kDa)

8.76

Isoelectric Point (pI)

54.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	23 - 74	1.2e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002859)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21560 FvH4_2g21561
malus_domestica	MD05G1198800.v1.1 MD10G1185000.v1.1
prunus_persica	Prupe.8G224700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0288241 RchiOBHm_Chr6g0288251 RchiOBHm_Chr6g0288261
rosa_laevigata	RLG00000012420 RLG00000012421 RLG00000012422 RLG00000017373 RLG00000017374
rosa_multiflora	Rmu_co8125528.1_g000001 Rmu_co8198010.1_g000001 Rmu_co8388259.1_g000001 Rmu_sc0001038.1_g000001 Rmu_sc0004300.1_g000010 Rmu_sc0028578.1_g000001 Rmu_sc0028578.1_g000002 Rmu_sc0042461.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180280 Rroxscaffold_7G00180290 Rroxscaffold_7G00180310
rosa_rugosa	Rorug06G0195000 Rorug06G0195100 Rorug06G0195200
rosa_samantha	Rh6AG306000 Rh6AG306100 Rh6AG306200 Rh6BG311600 Rh6BG311700 Rh6BG311800 Rh6CG319600 Rh6CG319700 Rh6DG304900 Rh6DG305000
rosa_wichuraiana	Rw6G026460 Rw6G026470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	497
AciI	CCGC	4 cut(s)	110, 173, 482, 503
AclWI	GGATC	1 cut(s)	535
AcoI	YGGCCR	2 cut(s)	92, 228
AcsI	RAATTY	3 cut(s)	295, 395, 448
AfaI	GTAC	4 cut(s)	74, 160, 254, 404
AfiI	CCNNNNNNNGG	1 cut(s)	353
AjiI	CACGTC	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	3 cut(s)	203, 279, 430
AluI	AGCT	3 cut(s)	203, 279, 430
Alw26I	GTCTC	3 cut(s)	82, 117, 161
AlwI	GGATC	1 cut(s)	535
AoxI	GGCC	2 cut(s)	92, 228
ApeKI	GCWGC	3 cut(s)	43, 182, 203
ApoI	RAATTY	3 cut(s)	295, 395, 448
AspS9I	GGNCC	1 cut(s)	383
AsuC2I	CCSGG	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	383
BaeGI	GKGCMC	1 cut(s)	145
BalI	TGGCCA	1 cut(s)	230
BbsI	GAAGAC	1 cut(s)	550
BbvI	GCAGC	3 cut(s)	55, 190, 194
BccI	CCATC	5 cut(s)	56, 239, 277, 347, 531
BceAI	ACGGC	4 cut(s)	79, 107, 186, 516
BcgI	CGANNNNNNTGC	4 cut(s)	477, 511, 525, 559
BciT130I	CCWGG	1 cut(s)	407
BcnI	CCSGG	1 cut(s)	70
BcoDI	GTCTC	3 cut(s)	82, 117, 161
BfaI	CTAG	2 cut(s)	155, 562
BisI	GCNGC	5 cut(s)	44, 111, 183, 204, 504
BlsI	GCNGC	5 cut(s)	45, 112, 184, 205, 505
Bme1390I	CCNGG	2 cut(s)	70, 407
Bme18I	GGWCC	1 cut(s)	383
BmgBI	CACGTC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	1 cut(s)	521
BmrFI	CCNGG	2 cut(s)	70, 407
BmsI	GCATC	1 cut(s)	465
BpiI	GAAGAC	1 cut(s)	550
BpuMI	CCSGG	1 cut(s)	70
BsaI	GGTCTC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	95, 523
BsaXI	ACNNNNNCTCC	2 cut(s)	476, 506
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse118I	RCCGGY	1 cut(s)	478
Bse1I	ACTGG	1 cut(s)	386
BseBI	CCWGG	1 cut(s)	407
BseDI	CCNNGG	2 cut(s)	95, 523
BseGI	GGATG	2 cut(s)	231, 480
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseNI	ACTGG	1 cut(s)	386
BseRI	GAGGAG	1 cut(s)	440
BseSI	GKGCMC	1 cut(s)	145
BseX3I	CGGCCG	1 cut(s)	92
BseXI	GCAGC	3 cut(s)	55, 190, 194
Bsh1285I	CGRYCG	1 cut(s)	95
BshFI	GGCC	2 cut(s)	94, 230
BsiEI	CGRYCG	1 cut(s)	95
BsiSI	CCGG	2 cut(s)	70, 479
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmAI	GTCTC	3 cut(s)	82, 117, 161
BsmBI	CGTCTC	2 cut(s)	82, 161
BsnI	GGCC	2 cut(s)	94, 230
Bso31I	GGTCTC	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	3 cut(s)	61, 196, 527
BspACI	CCGC	4 cut(s)	110, 173, 482, 503
BspANI	GGCC	2 cut(s)	94, 230
BspLI	GGNNCC	1 cut(s)	521
BspPI	GGATC	1 cut(s)	535
BspQI	GCTCTTC	1 cut(s)	432
BspTNI	GGTCTC	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	478
BsrI	ACTGG	1 cut(s)	386
BssAI	RCCGGY	1 cut(s)	478
BssECI	CCNNGG	2 cut(s)	95, 523
BssMI	GATC	3 cut(s)	61, 196, 527
BssT1I	CCWWGG	1 cut(s)	523
Bst2UI	CCWGG	1 cut(s)	407
Bst6I	CTCTTC	3 cut(s)	29, 171, 432
BstC8I	GCNNGC	1 cut(s)	480
BstDSI	CCRYGG	1 cut(s)	95
BstF5I	GGATG	2 cut(s)	231, 480
BstKTI	GATC	3 cut(s)	64, 199, 530
BstMAI	GTCTC	3 cut(s)	82, 117, 161
BstMBI	GATC	3 cut(s)	61, 196, 527
BstMCI	CGRYCG	1 cut(s)	95
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 188, 512
BstNI	CCWGG	1 cut(s)	407
BstSCI	CCNGG	2 cut(s)	68, 405
BstSLI	GKGCMC	1 cut(s)	145
BstV1I	GCAGC	3 cut(s)	55, 190, 194
BstV2I	GAAGAC	1 cut(s)	550
BstX2I	RGATCY	1 cut(s)	527
BstYI	RGATCY	1 cut(s)	527
BstZI	CGGCCG	1 cut(s)	92
BsuRI	GGCC	2 cut(s)	94, 230
BtgI	CCRYGG	1 cut(s)	95
BtrI	CACGTC	1 cut(s)	146
BtsCI	GGATG	2 cut(s)	231, 480
BtsIMutI	CAGTG	1 cut(s)	393
Cac8I	GCNNGC	1 cut(s)	480
Cfr10I	RCCGGY	1 cut(s)	478
Cfr13I	GGNCC	1 cut(s)	383
Csp6I	GTAC	4 cut(s)	73, 159, 253, 403
CviQI	GTAC	4 cut(s)	73, 159, 253, 403
DpnI	GATC	3 cut(s)	63, 198, 529
DpnII	GATC	3 cut(s)	61, 196, 527
EaeI	YGGCCR	2 cut(s)	92, 228
EagI	CGGCCG	1 cut(s)	92
Eam1104I	CTCTTC	3 cut(s)	29, 171, 432
EarI	CTCTTC	3 cut(s)	29, 171, 432
EciI	GGCGGA	2 cut(s)	188, 497
EclXI	CGGCCG	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	523
Eco31I	GGTCTC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	383
Eco52I	CGGCCG	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	405
EcoT14I	CCWWGG	1 cut(s)	523
ErhI	CCWWGG	1 cut(s)	523
Esp3I	CGTCTC	2 cut(s)	82, 161
FaiI	YATR	4 cut(s)	108, 151, 195, 416
FblI	GTMKAC	1 cut(s)	497
Fnu4HI	GCNGC	5 cut(s)	44, 111, 183, 204, 504
FokI	GGATG	2 cut(s)	218, 487
Fsp4HI	GCNGC	5 cut(s)	44, 111, 183, 204, 504
FspBI	CTAG	2 cut(s)	155, 562
GluI	GCNGC	5 cut(s)	44, 111, 183, 204, 504
HaeIII	GGCC	2 cut(s)	94, 230
HapII	CCGG	2 cut(s)	70, 479
HincII	GTYRAC	1 cut(s)	498
HindII	GTYRAC	1 cut(s)	498
HinfI	GANTC	3 cut(s)	82, 118, 555
HpaII	CCGG	2 cut(s)	70, 479
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	498
Hpy188I	TCNGA	3 cut(s)	66, 87, 461
Hpy188III	TCNNGA	3 cut(s)	122, 244, 434
Hpy8I	GTNNAC	1 cut(s)	498
Hpy99I	CGWCG	1 cut(s)	502
HpyAV	CCTTC	2 cut(s)	138, 374
HpyCH4IV	ACGT	2 cut(s)	145, 161
HpyCH4V	TGCA	1 cut(s)	546
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 188, 512
HpySE526I	ACGT	2 cut(s)	145, 161
KroI	GCCGGC	1 cut(s)	478
KroNI	GCCGGC	1 cut(s)	480
Kzo9I	GATC	3 cut(s)	61, 196, 527
LguI	GCTCTTC	1 cut(s)	432
LmnI	GCTCC	3 cut(s)	349, 427, 519
LpnPI	CCDG	9 cut(s)	83, 289, 360, 392, 399, 419, 419, 492, 492
Lsp1109I	GCAGC	3 cut(s)	55, 190, 194
LweI	GCATC	1 cut(s)	465
MaeI	CTAG	2 cut(s)	155, 562
MaeII	ACGT	2 cut(s)	145, 161
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	3 cut(s)	63, 198, 529
MboI	GATC	3 cut(s)	61, 196, 527
MboII	GAAGA	7 cut(s)	46, 188, 297, 300, 330, 449, 550
MflI	RGATCY	1 cut(s)	527
MhlI	GDGCHC	1 cut(s)	145
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	4 cut(s)	295, 328, 395, 448
MluNI	TGGCCA	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	564
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	9 cut(s)	71, 126, 172, 180, 245, 418, 465, 478, 545
Mox20I	TGGCCA	1 cut(s)	230
MroNI	GCCGGC	1 cut(s)	478
MscI	TGGCCA	1 cut(s)	230
MslI	CAYNNNNRTG	2 cut(s)	53, 148
Msp20I	TGGCCA	1 cut(s)	230
MspI	CCGG	2 cut(s)	70, 479
MspR9I	CCNGG	2 cut(s)	70, 407
MvaI	CCWGG	1 cut(s)	407
MwoI	GCNNNNNNNGC	3 cut(s)	179, 188, 512
NaeI	GCCGGC	1 cut(s)	480
NciI	CCSGG	1 cut(s)	70
NdeII	GATC	3 cut(s)	61, 196, 527
NgoMIV	GCCGGC	1 cut(s)	478
NlaIV	GGNNCC	1 cut(s)	521
PciSI	GCTCTTC	1 cut(s)	432
PdiI	GCCGGC	1 cut(s)	480
PfeI	GAWTC	2 cut(s)	82, 118
PkrI	GCNGC	5 cut(s)	45, 112, 184, 205, 505
PleI	GAGTC	1 cut(s)	563
PpsI	GAGTC	1 cut(s)	563
Psp6I	CCWGG	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	1 cut(s)	521
PspPI	GGNCC	1 cut(s)	383
PsuI	RGATCY	1 cut(s)	527
RsaI	GTAC	4 cut(s)	74, 160, 254, 404
RsaNI	GTAC	4 cut(s)	73, 159, 253, 403
RseI	CAYNNNNRTG	2 cut(s)	53, 148
SalI	GTCGAC	1 cut(s)	496
SapI	GCTCTTC	1 cut(s)	432
SatI	GCNGC	5 cut(s)	44, 111, 183, 204, 504
Sau3AI	GATC	3 cut(s)	61, 196, 527
Sau96I	GGNCC	1 cut(s)	383
SchI	GAGTC	1 cut(s)	564
ScrFI	CCNGG	2 cut(s)	70, 407
SduI	GDGCHC	1 cut(s)	145
SfaNI	GCATC	1 cut(s)	465
SinI	GGWCC	1 cut(s)	383
SmiMI	CAYNNNNRTG	2 cut(s)	53, 148
Sse9I	AATT	4 cut(s)	295, 328, 395, 448
SsiI	CCGC	4 cut(s)	110, 173, 482, 503
SspMI	CTAG	2 cut(s)	155, 562
StyD4I	CCNGG	2 cut(s)	68, 405
StyI	CCWWGG	1 cut(s)	523
TaiI	ACGT	2 cut(s)	148, 164
TaqI	TCGA	4 cut(s)	121, 131, 199, 497
TasI	AATT	4 cut(s)	295, 328, 395, 448
TauI	GCSGC	2 cut(s)	113, 506
TfiI	GAWTC	2 cut(s)	82, 118
TscAI	CASTG	1 cut(s)	393
TseI	GCWGC	3 cut(s)	43, 182, 203
TspDTI	ATGAA	3 cut(s)	42, 300, 321
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	1 cut(s)	393
VpaK11BI	GGWCC	1 cut(s)	383
XapI	RAATTY	3 cut(s)	295, 395, 448
XmiI	GTMKAC	1 cut(s)	497
XspI	CTAG	2 cut(s)	155, 562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.