FvH4_2g21600

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0005523
Physical Location & Seq
Reverse (-)
17940120 .. 17940527
408 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g21600.t1

Sequence Viewer

Length: 408 bp
ATGAAAGAAGACACCAGCAAAAGCAACAAGGTAGAAGAGGAGGGACAGAAATATGTCAAGTACAGAGGAGTAAGAAGAAGGCCATGGGGAAAGTTTGCTGCAGAAATACGTGATTCGACAAAGCAGGGAGTTCGGTTGTGGCTTGGGACTTTTAATACTGCAACAGAAGCTGCAAGGGCATATGACAAAGCCGCTTTCTCTATGAGAGGTCCTCTTGCAATTCTCAATTTCCGTAGTGAGCATGGTTTTGTAGATGCTGATTCCGCTGCTGCTACTTCCTCATGCTTCACAGCATCATCTTCCACATTGCATAACACGGTCATGAGAACAGAACCCGGAAAAGAAGTTATCGTGTTTGAGTATCTAGATGACAAGGTTTTAGAAGAACTTCTTGATTTTGAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

136

Amino Acids

15.22

Weight (kDa)

6.15

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 20 - 70 7.9e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 192, 264
AfaI GTAC 1 cut(s) 62
AgsI TTSAA 1 cut(s) 401
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
AlwNI CAGNNNCTG 1 cut(s) 170
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 4 cut(s) 98, 170, 266, 269
Asp700I GAANNNNTTC 1 cut(s) 387
AspS9I GGNCC 1 cut(s) 209
AsuC2I CCSGG 1 cut(s) 336
AvaII GGWCC 1 cut(s) 209
BbsI GAAGAC 1 cut(s) 15
BbvI GCAGC 4 cut(s) 85, 157, 253, 256
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BcnI CCSGG 1 cut(s) 336
BfaI CTAG 1 cut(s) 365
BfmI CTRYAG 1 cut(s) 99
BisI GCNGC 5 cut(s) 99, 171, 192, 267, 270
BlsI GCNGC 5 cut(s) 100, 172, 193, 268, 271
Bme1390I CCNGG 1 cut(s) 336
Bme18I GGWCC 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 209
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 2 cut(s) 244, 302
BpiI GAAGAC 1 cut(s) 15
BplI GAGNNNNNCTC 2 cut(s) 196, 228
BpuMI CCSGG 1 cut(s) 336
BsaAI YACGTR 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 83
Bse3DI GCAATG 1 cut(s) 305
BseDI CCNNGG 1 cut(s) 83
BseMI GCAATG 1 cut(s) 305
BseRI GAGGAG 2 cut(s) 53, 81
BseXI GCAGC 4 cut(s) 85, 157, 253, 256
BshFI GGCC 1 cut(s) 82
BsiSI CCGG 1 cut(s) 336
BslFI GGGAC 2 cut(s) 57, 160
BsmFI GGGAC 2 cut(s) 57, 160
BsnI GGCC 1 cut(s) 82
Bsp19I CCATGG 1 cut(s) 83
BspACI CCGC 2 cut(s) 192, 264
BspANI GGCC 1 cut(s) 82
BspHI TCATGA 1 cut(s) 321
BspMAI CTGCAG 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 305
BssECI CCNNGG 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 319
Bst6I CTCTTC 1 cut(s) 30
BstBAI YACGTR 1 cut(s) 110
BstDSI CCRYGG 1 cut(s) 83
BstMWI GCNNNNNNNGC 3 cut(s) 167, 176, 263
BstSCI CCNGG 1 cut(s) 334
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 4 cut(s) 85, 157, 253, 256
BstV2I GAAGAC 1 cut(s) 15
BsuRI GGCC 1 cut(s) 82
BtgI CCRYGG 1 cut(s) 83
CaiI CAGNNNCTG 1 cut(s) 170
CciI TCATGA 1 cut(s) 321
Cfr13I GGNCC 1 cut(s) 209
Csp6I GTAC 1 cut(s) 61
CviAII CATG 4 cut(s) 84, 242, 282, 322
CviJI RGCY 4 cut(s) 82, 142, 170, 191
CviKI_1 RGCY 4 cut(s) 82, 142, 170, 191
CviQI GTAC 1 cut(s) 61
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 83
Eco47I GGWCC 1 cut(s) 209
EcoO109I RGGNCCY 1 cut(s) 209
EcoT14I CCWWGG 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 83
FaeI CATG 4 cut(s) 87, 245, 285, 325
FaiI YATR 9 cut(s) 54, 85, 181, 183, 203, 243, 283, 312, 323
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FaqI GGGAC 2 cut(s) 57, 160
FatI CATG 4 cut(s) 83, 241, 281, 321
FauNDI CATATG 1 cut(s) 181
Fnu4HI GCNGC 5 cut(s) 99, 171, 192, 267, 270
Fsp4HI GCNGC 5 cut(s) 99, 171, 192, 267, 270
FspBI CTAG 1 cut(s) 365
GluI GCNGC 5 cut(s) 99, 171, 192, 267, 270
HaeIII GGCC 1 cut(s) 82
HapII CCGG 1 cut(s) 336
Hin1II CATG 4 cut(s) 87, 245, 285, 325
HinfI GANTC 2 cut(s) 113, 260
HpaII CCGG 1 cut(s) 336
Hpy188III TCNNGA 3 cut(s) 322, 365, 392
HpyAV CCTTC 1 cut(s) 72
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 5 cut(s) 101, 161, 173, 218, 310
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 176, 263
HpySE526I ACGT 1 cut(s) 109
Hsp92II CATG 4 cut(s) 87, 245, 285, 325
LpnPI CCDG 3 cut(s) 28, 110, 349
Lsp1109I GCAGC 4 cut(s) 85, 157, 253, 256
LweI GCATC 2 cut(s) 244, 302
MaeI CTAG 1 cut(s) 365
MaeII ACGT 1 cut(s) 109
MboII GAAGA 5 cut(s) 20, 47, 87, 291, 395
MluCI AATT 2 cut(s) 219, 226
MnlI CCTC 6 cut(s) 31, 34, 59, 200, 222, 289
MroXI GAANNNNTTC 1 cut(s) 387
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 1 cut(s) 320
MspA1I CMGCKG 1 cut(s) 266
MspI CCGG 1 cut(s) 336
MspR9I CCNGG 1 cut(s) 336
MwoI GCNNNNNNNGC 3 cut(s) 167, 176, 263
NciI CCSGG 1 cut(s) 336
NcoI CCATGG 1 cut(s) 83
NdeI CATATG 1 cut(s) 181
NlaIII CATG 4 cut(s) 87, 245, 285, 325
PagI TCATGA 1 cut(s) 321
PdmI GAANNNNTTC 1 cut(s) 387
PfeI GAWTC 2 cut(s) 113, 260
PkrI GCNGC 5 cut(s) 100, 172, 193, 268, 271
Ppu21I YACGTR 1 cut(s) 110
PpuMI RGGWCCY 1 cut(s) 209
Psp5II RGGWCCY 1 cut(s) 209
PspPI GGNCC 1 cut(s) 209
PspPPI RGGWCCY 1 cut(s) 209
PstI CTGCAG 1 cut(s) 103
PstNI CAGNNNCTG 1 cut(s) 170
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
RseI CAYNNNNRTG 1 cut(s) 320
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 5 cut(s) 99, 171, 192, 267, 270
Sau96I GGNCC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 336
SetI ASST 5 cut(s) 33, 112, 172, 211, 378
SfaNI GCATC 2 cut(s) 244, 302
SfcI CTRYAG 1 cut(s) 99
SinI GGWCC 1 cut(s) 209
SmiMI CAYNNNNRTG 1 cut(s) 320
Sse9I AATT 2 cut(s) 219, 226
SsiI CCGC 2 cut(s) 192, 264
SspMI CTAG 1 cut(s) 365
StyD4I CCNGG 1 cut(s) 334
StyI CCWWGG 1 cut(s) 83
TaaI ACNGT 1 cut(s) 319
TaiI ACGT 1 cut(s) 112
TaqI TCGA 1 cut(s) 116
TasI AATT 2 cut(s) 219, 226
TatI WGTACW 1 cut(s) 60
TauI GCSGC 1 cut(s) 194
TfiI GAWTC 2 cut(s) 113, 260
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseI GCWGC 4 cut(s) 98, 170, 266, 269
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 209
XbaI TCTAGA 1 cut(s) 364
XmnI GAANNNNTTC 1 cut(s) 387
XspI CTAG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.