Rroxscaffold_7G00180260

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0005523
Physical Location & Seq
Forward (+)
19732903 .. 19733346
444 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00180260.1

Sequence Viewer

Length: 444 bp
ATGAAAGAAGATCCCAGCAAAAGCAACAAGGTAGAAGAGGAGGGACAGAAATATGTCAAGTACAGAGGAGTAAGAAGAAGGCCATGGGGAAAGTTTGCAGCAGAAATACGAGATTCGACGAGGCAAGGAGTTCGGTTGTGGCTTGGGACTTTTAATACTGCAAAAGAGGCTGCAAGGGCATATGACAAAGCTGCTTTCTCTATGAGGGGTCGTCTTGCAATTCTCAATTTCCCTAGTGAGCATGGTTTTGTAGATGTTGATTACGCTGCCGCTACTTCCTCATCTTTCACAGCATCATCTTCGACACGACATAACATGGGAGTGACAATGAGAACAGAACCCGGAAAAGAAGTTTTTGTGTTTGAGTATCTAGATGACAAGGTTTTAGAGGAACTTCTTGACTTTGAAAACCAAAGCAAGAGAGTGAAACTTGGTGTAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

147

Amino Acids

16.74

Weight (kDa)

9.33

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 20 - 70 6.9e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 270
AclWI GGATC 1 cut(s) 5
AfaI GTAC 1 cut(s) 62
AgsI TTSAA 1 cut(s) 407
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
AlwI GGATC 1 cut(s) 5
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 4 cut(s) 98, 170, 191, 266
AsuC2I CCSGG 1 cut(s) 342
BbvI GCAGC 4 cut(s) 110, 157, 178, 253
BcgI CGANNNNNNTGC 4 cut(s) 113, 147, 282, 316
BcnI CCSGG 1 cut(s) 342
BfaI CTAG 2 cut(s) 234, 371
BisI GCNGC 5 cut(s) 99, 171, 192, 267, 270
BlsI GCNGC 5 cut(s) 100, 172, 193, 268, 271
Bme1390I CCNGG 1 cut(s) 342
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 1 cut(s) 302
BpuMI CCSGG 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 83
BseRI GAGGAG 2 cut(s) 53, 81
BseXI GCAGC 4 cut(s) 110, 157, 178, 253
BseYI CCCAGC 1 cut(s) 14
BshFI GGCC 1 cut(s) 82
BsiSI CCGG 1 cut(s) 342
BslFI GGGAC 2 cut(s) 57, 160
BsmFI GGGAC 2 cut(s) 57, 160
BsnI GGCC 1 cut(s) 82
Bsp143I GATC 1 cut(s) 10
Bsp19I CCATGG 1 cut(s) 83
BspACI CCGC 1 cut(s) 270
BspANI GGCC 1 cut(s) 82
BspPI GGATC 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 83
BssMI GATC 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 83
Bst6I CTCTTC 1 cut(s) 30
BstDSI CCRYGG 1 cut(s) 83
BstKTI GATC 1 cut(s) 13
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 2 cut(s) 167, 176
BstSCI CCNGG 1 cut(s) 340
BstV1I GCAGC 4 cut(s) 110, 157, 178, 253
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BsuRI GGCC 1 cut(s) 82
BtgI CCRYGG 1 cut(s) 83
Csp6I GTAC 1 cut(s) 61
CviAII CATG 3 cut(s) 84, 242, 316
CviJI RGCY 4 cut(s) 82, 142, 170, 191
CviKI_1 RGCY 4 cut(s) 82, 142, 170, 191
CviQI GTAC 1 cut(s) 61
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 83
FaeI CATG 3 cut(s) 87, 245, 319
FaiI YATR 8 cut(s) 54, 85, 181, 183, 203, 243, 312, 317
FaqI GGGAC 2 cut(s) 57, 160
FatI CATG 3 cut(s) 83, 241, 315
FauNDI CATATG 1 cut(s) 181
Fnu4HI GCNGC 5 cut(s) 99, 171, 192, 267, 270
Fsp4HI GCNGC 5 cut(s) 99, 171, 192, 267, 270
FspBI CTAG 2 cut(s) 234, 371
GluI GCNGC 5 cut(s) 99, 171, 192, 267, 270
GsaI CCCAGC 1 cut(s) 18
HaeIII GGCC 1 cut(s) 82
HapII CCGG 1 cut(s) 342
Hin1II CATG 3 cut(s) 87, 245, 319
HinfI GANTC 1 cut(s) 113
HpaII CCGG 1 cut(s) 342
Hpy188III TCNNGA 2 cut(s) 371, 398
Hpy99I CGWCG 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 72
HpyCH4V TGCA 4 cut(s) 98, 161, 173, 218
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 176
Hsp92II CATG 3 cut(s) 87, 245, 319
Kzo9I GATC 1 cut(s) 10
LpnPI CCDG 2 cut(s) 28, 355
Lsp1109I GCAGC 4 cut(s) 110, 157, 178, 253
LweI GCATC 1 cut(s) 302
MaeI CTAG 2 cut(s) 234, 371
MaeIII GTNAC 1 cut(s) 322
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 4 cut(s) 20, 47, 87, 291
MflI RGATCY 1 cut(s) 10
MluCI AATT 3 cut(s) 219, 226, 439
MnlI CCTC 8 cut(s) 31, 34, 59, 114, 160, 198, 289, 382
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 1 cut(s) 320
MspI CCGG 1 cut(s) 342
MspR9I CCNGG 1 cut(s) 342
MwoI GCNNNNNNNGC 2 cut(s) 167, 176
NciI CCSGG 1 cut(s) 342
NcoI CCATGG 1 cut(s) 83
NdeI CATATG 1 cut(s) 181
NdeII GATC 1 cut(s) 10
NlaIII CATG 3 cut(s) 87, 245, 319
NmuCI GTSAC 1 cut(s) 322
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 5 cut(s) 100, 172, 193, 268, 271
PspFI CCCAGC 1 cut(s) 14
PsuI RGATCY 1 cut(s) 10
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
RseI CAYNNNNRTG 1 cut(s) 320
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 5 cut(s) 99, 171, 192, 267, 270
Sau3AI GATC 1 cut(s) 10
ScrFI CCNGG 1 cut(s) 342
SetI ASST 3 cut(s) 33, 193, 384
SfaNI GCATC 1 cut(s) 302
SmiMI CAYNNNNRTG 1 cut(s) 320
Sse9I AATT 3 cut(s) 219, 226, 439
SsiI CCGC 1 cut(s) 270
SspMI CTAG 2 cut(s) 234, 371
StyD4I CCNGG 1 cut(s) 340
StyI CCWWGG 1 cut(s) 83
TaqI TCGA 2 cut(s) 116, 302
TasI AATT 3 cut(s) 219, 226, 439
TatI WGTACW 1 cut(s) 60
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 4 cut(s) 98, 170, 191, 266
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 1 cut(s) 17
XbaI TCTAGA 1 cut(s) 370
XspI CTAG 2 cut(s) 234, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.