Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005523

Physical Location & Seq

Genomic Coordinates Forward (+)

18607706 .. 18608629

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012418

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGATTCACATTCAGTTAGTACTATCCGATATGAAGGAAGATCCCAGCAAAAGCAACAAGAAAGAAGAGAAGGGACAGAAATATGTCAAGTACAGAGGAGTAAGAAGAAGGCCATGGGGAAAGTTTGCAGCAGAAATACGCGATTCAACGAGGCAAGGAGTTCGGTTGTGGCTTGGGACTTTAATACTGCAAAAGACGCTGCAAGGGCATATGACAAAGCCGCTTTCTCTATGAGGGGTCCTCTTGCAATTCTCAATTTCCCTAGTGAGCATGGTTTTGTAGATGCTGATTACGCTGCTGCTACTTCCTCATCTTTCACAGCATCATCTTCAACACTGCATAACATGGAAGTGACAACGAGAACAGAACCCAGAAAAGAAGTTTTTGTGTTCGAGTATCTAGATGACAAGTATGTTGCCTACCCTCTCACTGCTGAGATTGTGTGCTGGGGACATTTCGCCATTTCGGCAGATGAAGATGCCAGTGCTGCGCAATTGGTACCAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

170

Amino Acids

18.89

Weight (kDa)

6.1

Isoelectric Point (pI)

41.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21590 FvH4_2g21600
malus_domestica	MD05G1198900.v1.1 MD10G1185100.v1.1
prunus_persica	Prupe.8G224800_v2.0.a1
pyrus_communis	pycom05g18520 pycom10g16020
rosa_chinensis	RchiOBHm_Chr6g0288271 RchiOBHm_Chr6g0288281
rosa_laevigata	RLG00000012418 RLG00000012419 RLG00000017371 RLG00000017372
rosa_multiflora	Rmu_co8380525.1_g000001 Rmu_sc0001038.1_g000002
rosa_roxburghii	Rroxscaffold_7G00180260 Rroxscaffold_7G00180270
rosa_rugosa	Rorug06G0195300 Rorug06G0195300
rosa_samantha	Rh6AG306300 Rh6AG306400 Rh6BG311900 Rh6BG312000 Rh6CG319900 Rh6CG320000 Rh6DG305200 Rh6DG305300
rosa_wichuraiana	Rw6G026490 Rw6G026500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	492
Acc65I	GGTACC	1 cut(s)	499
AccB1I	GGYRCC	1 cut(s)	499
AccII	CGCG	1 cut(s)	142
AciI	CCGC	1 cut(s)	222
AclWI	GGATC	1 cut(s)	36
AfaI	GTAC	3 cut(s)	22, 93, 501
AgsI	TTSAA	2 cut(s)	148, 333
AlwI	GGATC	1 cut(s)	36
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	5 cut(s)	129, 200, 296, 299, 488
Asp718I	GGTACC	1 cut(s)	499
AspLEI	GCGC	1 cut(s)	493
AspS9I	GGNCC	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	239
BanI	GGYRCC	1 cut(s)	499
BbvI	GCAGC	5 cut(s)	141, 187, 283, 286, 475
BcgI	CGANNNNNNTGC	2 cut(s)	144, 178
BfaI	CTAG	3 cut(s)	264, 401, 508
BglI	GCCNNNNNGGC	1 cut(s)	467
BisI	GCNGC	6 cut(s)	130, 201, 222, 297, 300, 489
BlsI	GCNGC	6 cut(s)	131, 202, 223, 298, 301, 490
BmcAI	AGTACT	1 cut(s)	22
Bme18I	GGWCC	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	2 cut(s)	240, 501
BmsI	GCATC	3 cut(s)	274, 332, 469
BplI	GAGNNNNNCTC	2 cut(s)	226, 258
BsaJI	CCNNGG	1 cut(s)	114
Bse1I	ACTGG	1 cut(s)	483
BseDI	CCNNGG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	1 cut(s)	483
BseRI	GAGGAG	1 cut(s)	112
BseXI	GCAGC	5 cut(s)	141, 187, 283, 286, 475
BseYI	CCCAGC	2 cut(s)	45, 447
Bsh1236I	CGCG	1 cut(s)	142
BshFI	GGCC	1 cut(s)	113
BshNI	GGYRCC	1 cut(s)	499
BslFI	GGGAC	3 cut(s)	88, 191, 465
BsmFI	GGGAC	3 cut(s)	88, 191, 465
BsnI	GGCC	1 cut(s)	113
Bsp143I	GATC	1 cut(s)	41
Bsp19I	CCATGG	1 cut(s)	114
BspACI	CCGC	1 cut(s)	222
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	1 cut(s)	427
BspFNI	CGCG	1 cut(s)	142
BspLI	GGNNCC	2 cut(s)	240, 501
BspPI	GGATC	1 cut(s)	36
BspT107I	GGYRCC	1 cut(s)	499
BsrI	ACTGG	1 cut(s)	483
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	114
Bst6I	CTCTTC	1 cut(s)	61
BstDEI	CTNAG	1 cut(s)	435
BstDSI	CCRYGG	1 cut(s)	114
BstFNI	CGCG	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	493
BstKTI	GATC	1 cut(s)	44
BstMBI	GATC	1 cut(s)	41
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 206, 293, 467, 488
BstUI	CGCG	1 cut(s)	142
BstV1I	GCAGC	5 cut(s)	141, 187, 283, 286, 475
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	113
BtgI	CCRYGG	1 cut(s)	114
BtsI	GCAGTG	2 cut(s)	335, 429
BtsIMutI	CAGTG	3 cut(s)	335, 429, 490
CfoI	GCGC	1 cut(s)	493
Cfr13I	GGNCC	1 cut(s)	239
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	3 cut(s)	21, 92, 500
CviAII	CATG	3 cut(s)	115, 272, 346
CviJI	RGCY	3 cut(s)	113, 173, 221
CviKI_1	RGCY	3 cut(s)	113, 173, 221
CviQI	GTAC	3 cut(s)	21, 92, 500
DdeI	CTNAG	1 cut(s)	435
DpnI	GATC	1 cut(s)	43
DpnII	GATC	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	3 cut(s)	118, 275, 349
FaqI	GGGAC	3 cut(s)	88, 191, 465
FatI	CATG	3 cut(s)	114, 271, 345
FauNDI	CATATG	1 cut(s)	211
Fnu4HI	GCNGC	6 cut(s)	130, 201, 222, 297, 300, 489
Fsp4HI	GCNGC	6 cut(s)	130, 201, 222, 297, 300, 489
FspBI	CTAG	3 cut(s)	264, 401, 508
FspI	TGCGCA	1 cut(s)	492
GlaI	GCGC	1 cut(s)	492
GluI	GCNGC	6 cut(s)	130, 201, 222, 297, 300, 489
GsaI	CCCAGC	2 cut(s)	49, 451
HaeIII	GGCC	1 cut(s)	113
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	1 cut(s)	493
Hin1II	CATG	3 cut(s)	118, 275, 349
Hin6I	GCGC	1 cut(s)	491
HinP1I	GCGC	1 cut(s)	491
HinfI	GANTC	2 cut(s)	5, 144
Hpy188I	TCNGA	1 cut(s)	29
Hpy188III	TCNNGA	1 cut(s)	401
HpyAV	CCTTC	3 cut(s)	29, 65, 103
HpyCH4V	TGCA	5 cut(s)	129, 191, 203, 248, 340
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 206, 293, 467, 488
HpyF3I	CTNAG	1 cut(s)	435
Hsp92II	CATG	3 cut(s)	118, 275, 349
HspAI	GCGC	1 cut(s)	491
KpnI	GGTACC	1 cut(s)	503
Kzo9I	GATC	1 cut(s)	41
LpnPI	CCDG	4 cut(s)	59, 385, 433, 496
Lsp1109I	GCAGC	5 cut(s)	141, 187, 283, 286, 475
LweI	GCATC	3 cut(s)	274, 332, 469
MaeI	CTAG	3 cut(s)	264, 401, 508
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	1 cut(s)	43
MboI	GATC	1 cut(s)	41
MboII	GAAGA	5 cut(s)	51, 78, 118, 321, 488
MfeI	CAATTG	1 cut(s)	494
MflI	RGATCY	1 cut(s)	41
MluCI	AATT	3 cut(s)	249, 256, 494
MnlI	CCTC	6 cut(s)	90, 145, 228, 252, 319, 435
MseI	TTAA	1 cut(s)	183
MslI	CAYNNNNRTG	1 cut(s)	350
MunI	CAATTG	1 cut(s)	494
MvnI	CGCG	1 cut(s)	142
MwoI	GCNNNNNNNGC	5 cut(s)	197, 206, 293, 467, 488
NcoI	CCATGG	1 cut(s)	114
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	1 cut(s)	41
NlaIII	CATG	3 cut(s)	118, 275, 349
NlaIV	GGNNCC	2 cut(s)	240, 501
NmuCI	GTSAC	1 cut(s)	352
NsbI	TGCGCA	1 cut(s)	492
PfeI	GAWTC	2 cut(s)	5, 144
PkrI	GCNGC	6 cut(s)	131, 202, 223, 298, 301, 490
PpuMI	RGGWCCY	1 cut(s)	239
Psp5II	RGGWCCY	1 cut(s)	239
PspFI	CCCAGC	2 cut(s)	45, 447
PspN4I	GGNNCC	2 cut(s)	240, 501
PspPI	GGNCC	1 cut(s)	239
PspPPI	RGGWCCY	1 cut(s)	239
PsuI	RGATCY	1 cut(s)	41
RsaI	GTAC	3 cut(s)	22, 93, 501
RsaNI	GTAC	3 cut(s)	21, 92, 500
RseI	CAYNNNNRTG	1 cut(s)	350
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	6 cut(s)	130, 201, 222, 297, 300, 489
Sau3AI	GATC	1 cut(s)	41
Sau96I	GGNCC	1 cut(s)	239
ScaI	AGTACT	1 cut(s)	22
SfaNI	GCATC	3 cut(s)	274, 332, 469
SinI	GGWCC	1 cut(s)	239
SmiMI	CAYNNNNRTG	1 cut(s)	350
Sse9I	AATT	3 cut(s)	249, 256, 494
SsiI	CCGC	1 cut(s)	222
SspMI	CTAG	3 cut(s)	264, 401, 508
StyI	CCWWGG	1 cut(s)	114
TaqI	TCGA	1 cut(s)	393
TasI	AATT	3 cut(s)	249, 256, 494
TatI	WGTACW	2 cut(s)	20, 91
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	2 cut(s)	5, 144
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	3 cut(s)	342, 436, 490
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	5 cut(s)	129, 200, 296, 299, 488
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	2 cut(s)	48, 489
TspRI	CASTG	3 cut(s)	342, 436, 490
VpaK11BI	GGWCC	1 cut(s)	239
XbaI	TCTAGA	1 cut(s)	400
XspI	CTAG	3 cut(s)	264, 401, 508
ZrmI	AGTACT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.