Rmu_sc0001038.1_g000002

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001038.1
OG0005523
Physical Location & Seq
Reverse (-)
8966 .. 9406
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001038.1_g000002.1.cds

Sequence Viewer

Length: 441 bp
atgaaagaaggtcccagcaaaagcaacaagatagaagatgagagacagaaatatgtcaagtacagaggagtaagaagaaggccatggggaaagtttgcagcagaaatacgcgattcgacaaggcaaggagttcggttgtggcttgggacttttaatactgcaaaagaggctgcaagggcatatgacaaagccgctttctctatgaggggtcctcttgcaattctcaatttcccaagtgagcatggttttgtatatgctgattctgctgctacttcctcatctttcacagcatcatcttcaacactgcataacatggaagtgacaatgagaacagaacccagaaaagaagtttttgtgttcgaatatctagatgacaaggttttagaggaacttcttgattttgaaaacaatagcaagagagtggaacttggtgtacaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

146

Amino Acids

16.72

Weight (kDa)

9.15

Isoelectric Point (pI)

45.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 111
AciI CCGC 1 cut(s) 192
AfaI GTAC 2 cut(s) 62, 435
AgsI TTSAA 2 cut(s) 300, 404
Alw26I GTCTC 1 cut(s) 37
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 3 cut(s) 98, 170, 266
AspS9I GGNCC 2 cut(s) 11, 209
AsuII TTCGAA 1 cut(s) 360
AvaII GGWCC 2 cut(s) 11, 209
BbvI GCAGC 3 cut(s) 110, 157, 253
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 1 cut(s) 368
BisI GCNGC 4 cut(s) 99, 171, 192, 267
BlsI GCNGC 4 cut(s) 100, 172, 193, 268
Bme18I GGWCC 2 cut(s) 11, 209
BmgT120I GGNCC 2 cut(s) 11, 209
BmiI GGNNCC 2 cut(s) 13, 210
BmsI GCATC 1 cut(s) 299
BplI GAGNNNNNCTC 2 cut(s) 196, 228
Bpu14I TTCGAA 1 cut(s) 360
BsaJI CCNNGG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 83
BseRI GAGGAG 1 cut(s) 81
BseXI GCAGC 3 cut(s) 110, 157, 253
BseYI CCCAGC 1 cut(s) 14
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 1 cut(s) 82
BslFI GGGAC 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 160
BsnI GGCC 1 cut(s) 82
Bsp119I TTCGAA 1 cut(s) 360
Bsp1407I TGTACA 1 cut(s) 433
Bsp19I CCATGG 1 cut(s) 83
BspACI CCGC 1 cut(s) 192
BspANI GGCC 1 cut(s) 82
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 2 cut(s) 13, 210
BspT104I TTCGAA 1 cut(s) 360
BsrGI TGTACA 1 cut(s) 433
BssECI CCNNGG 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 83
BstAUI TGTACA 1 cut(s) 433
BstBI TTCGAA 1 cut(s) 360
BstDSI CCRYGG 1 cut(s) 83
BstFNI CGCG 1 cut(s) 111
BstMAI GTCTC 1 cut(s) 37
BstMWI GCNNNNNNNGC 3 cut(s) 167, 176, 263
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 3 cut(s) 110, 157, 253
BsuRI GGCC 1 cut(s) 82
BtgI CCRYGG 1 cut(s) 83
BtsI GCAGTG 1 cut(s) 302
BtsIMutI CAGTG 1 cut(s) 302
Cfr13I GGNCC 2 cut(s) 11, 209
Csp6I GTAC 2 cut(s) 61, 434
CviAII CATG 3 cut(s) 84, 242, 313
CviJI RGCY 4 cut(s) 82, 142, 170, 191
CviKI_1 RGCY 4 cut(s) 82, 142, 170, 191
CviQI GTAC 2 cut(s) 61, 434
Eco130I CCWWGG 1 cut(s) 83
Eco47I GGWCC 2 cut(s) 11, 209
EcoO109I RGGNCCY 2 cut(s) 11, 209
EcoT14I CCWWGG 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 83
FaeI CATG 3 cut(s) 87, 245, 316
FaqI GGGAC 1 cut(s) 160
FatI CATG 3 cut(s) 83, 241, 312
FauNDI CATATG 1 cut(s) 181
Fnu4HI GCNGC 4 cut(s) 99, 171, 192, 267
Fsp4HI GCNGC 4 cut(s) 99, 171, 192, 267
FspBI CTAG 1 cut(s) 368
GluI GCNGC 4 cut(s) 99, 171, 192, 267
GsaI CCCAGC 1 cut(s) 18
HaeIII GGCC 1 cut(s) 82
Hin1II CATG 3 cut(s) 87, 245, 316
HinfI GANTC 2 cut(s) 113, 260
Hpy166II GTNNAC 1 cut(s) 434
Hpy188III TCNNGA 2 cut(s) 368, 395
Hpy8I GTNNAC 1 cut(s) 434
HpyAV CCTTC 1 cut(s) 72
HpyCH4V TGCA 5 cut(s) 98, 161, 173, 218, 307
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 176, 263
Hsp92II CATG 3 cut(s) 87, 245, 316
LpnPI CCDG 2 cut(s) 28, 352
Lsp1109I GCAGC 3 cut(s) 110, 157, 253
LweI GCATC 1 cut(s) 299
MaeI CTAG 1 cut(s) 368
MaeIII GTNAC 1 cut(s) 319
MboII GAAGA 3 cut(s) 47, 87, 288
MluCI AATT 2 cut(s) 219, 226
MnlI CCTC 6 cut(s) 59, 160, 198, 222, 286, 379
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 1 cut(s) 317
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 3 cut(s) 167, 176, 263
NcoI CCATGG 1 cut(s) 83
NdeI CATATG 1 cut(s) 181
NlaIII CATG 3 cut(s) 87, 245, 316
NlaIV GGNNCC 2 cut(s) 13, 210
NmuCI GTSAC 1 cut(s) 319
NspV TTCGAA 1 cut(s) 360
PfeI GAWTC 2 cut(s) 113, 260
PkrI GCNGC 4 cut(s) 100, 172, 193, 268
PpuMI RGGWCCY 2 cut(s) 11, 209
Psp5II RGGWCCY 2 cut(s) 11, 209
PspFI CCCAGC 1 cut(s) 14
PspN4I GGNNCC 2 cut(s) 13, 210
PspPI GGNCC 2 cut(s) 11, 209
PspPPI RGGWCCY 2 cut(s) 11, 209
PsrI GAACNNNNNNTAC 1 cut(s) 417
RsaI GTAC 2 cut(s) 62, 435
RsaNI GTAC 2 cut(s) 61, 434
RseI CAYNNNNRTG 1 cut(s) 317
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 4 cut(s) 99, 171, 192, 267
Sau96I GGNCC 2 cut(s) 11, 209
SetI ASST 2 cut(s) 13, 381
SfaNI GCATC 1 cut(s) 299
SfuI TTCGAA 1 cut(s) 360
SinI GGWCC 2 cut(s) 11, 209
SmiMI CAYNNNNRTG 1 cut(s) 317
Sse9I AATT 2 cut(s) 219, 226
SsiI CCGC 1 cut(s) 192
SspMI CTAG 1 cut(s) 368
StyI CCWWGG 1 cut(s) 83
TaqI TCGA 2 cut(s) 116, 360
TasI AATT 2 cut(s) 219, 226
TatI WGTACW 2 cut(s) 60, 433
TauI GCSGC 1 cut(s) 194
TfiI GAWTC 2 cut(s) 113, 260
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 1 cut(s) 309
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 3 cut(s) 98, 170, 266
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 309
VpaK11BI GGWCC 2 cut(s) 11, 209
XbaI TCTAGA 1 cut(s) 367
XspI CTAG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.