Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8380525.1

Orthogroup ID

OG0005523

Physical Location & Seq

Genomic Coordinates Reverse (-)

206 .. 658

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8380525.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atggaaggagactcaagtagaggcagcaaggcaaaacaagaaggacagaaagatgtcaagtacagaggagtgaggagaaggccatgggggaagttcgcagcagaaatacgcgattcaacgaggcatggagaaggagctcggttgtggcttgggactttcaacactgcagaagaggctgctagggcttatgacagtgctgctttttcgatgaggggtgctcttgcaattctcaacttcccacgtgagcatggtttgccagatagttctgctgcttctgctgtttcctcaccatcttcatcttcgtcatccccaacatccatttcagcatcatcttcaacattgcagaatgtggaaggcacaactaggacagaacccagaagagaagtcttcgagattgagtgtttagatgacaaggttttagaggaccttcttgattttgacaggaaaggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

150

Amino Acids

16.34

Weight (kDa)

6.16

Isoelectric Point (pI)

65.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21590 FvH4_2g21600
malus_domestica	MD05G1198900.v1.1 MD10G1185100.v1.1
prunus_persica	Prupe.8G224800_v2.0.a1
pyrus_communis	pycom05g18520 pycom10g16020
rosa_chinensis	RchiOBHm_Chr6g0288271 RchiOBHm_Chr6g0288281
rosa_laevigata	RLG00000012418 RLG00000012419 RLG00000017371 RLG00000017372
rosa_multiflora	Rmu_co8380525.1_g000001 Rmu_sc0001038.1_g000002
rosa_roxburghii	Rroxscaffold_7G00180260 Rroxscaffold_7G00180270
rosa_rugosa	Rorug06G0195300 Rorug06G0195300
rosa_samantha	Rh6AG306300 Rh6AG306400 Rh6BG311900 Rh6BG312000 Rh6CG319900 Rh6CG320000 Rh6DG305200 Rh6DG305300
rosa_wichuraiana	Rw6G026490 Rw6G026500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	111
AcvI	CACGTG	1 cut(s)	242
AfaI	GTAC	1 cut(s)	62
AgsI	TTSAA	3 cut(s)	117, 160, 336
AjuI	GAANNNNNNNTTGG	2 cut(s)	304, 336
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
Alw21I	GWGCWC	2 cut(s)	139, 220
Alw26I	GTCTC	1 cut(s)	3
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	5 cut(s)	24, 98, 176, 197, 269
AspS9I	GGNCC	1 cut(s)	424
AsuHPI	GGTGA	1 cut(s)	279
AvaII	GGWCC	1 cut(s)	424
BanII	GRGCYC	1 cut(s)	139
BbrPI	CACGTG	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	379
Bbv12I	GWGCWC	2 cut(s)	139, 220
BbvI	GCAGC	5 cut(s)	36, 110, 163, 184, 256
BccI	CCATC	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	3
BfaI	CTAG	3 cut(s)	180, 363, 451
BfmI	CTRYAG	1 cut(s)	165
BisI	GCNGC	5 cut(s)	25, 99, 177, 198, 270
BlsI	GCNGC	5 cut(s)	26, 100, 178, 199, 271
Bme18I	GGWCC	1 cut(s)	424
BmgT120I	GGNCC	1 cut(s)	424
BmsI	GCATC	1 cut(s)	335
BpiI	GAAGAC	1 cut(s)	379
BplI	GAGNNNNNCTC	2 cut(s)	202, 234
BsaAI	YACGTR	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	83
Bse3DI	GCAATG	1 cut(s)	338
BseDI	CCNNGG	1 cut(s)	83
BseGI	GGATG	2 cut(s)	305, 314
BseMI	GCAATG	1 cut(s)	338
BseRI	GAGGAG	2 cut(s)	81, 88
BseXI	GCAGC	5 cut(s)	36, 110, 163, 184, 256
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	82
BsiHKAI	GWGCWC	2 cut(s)	139, 220
BslFI	GGGAC	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	3
BsmFI	GGGAC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	82
Bsp1286I	GDGCHC	2 cut(s)	139, 220
Bsp19I	CCATGG	1 cut(s)	83
BspANI	GGCC	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	111
BspMAI	CTGCAG	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	338
BssECI	CCNNGG	1 cut(s)	83
BssT1I	CCWWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	194
Bst6I	CTCTTC	2 cut(s)	165, 373
BstAPI	GCANNNNNTGC	1 cut(s)	253
BstBAI	YACGTR	1 cut(s)	242
BstDSI	CCRYGG	1 cut(s)	83
BstF5I	GGATG	2 cut(s)	305, 314
BstFNI	CGCG	1 cut(s)	111
BstMAI	GTCTC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 182, 253, 275
BstSFI	CTRYAG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	5 cut(s)	36, 110, 163, 184, 256
BstV2I	GAAGAC	1 cut(s)	379
BsuRI	GGCC	1 cut(s)	82
BtgI	CCRYGG	1 cut(s)	83
BtsCI	GGATG	2 cut(s)	305, 314
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	2 cut(s)	162, 199
Cfr13I	GGNCC	1 cut(s)	424
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	3 cut(s)	84, 125, 248
CviJI	RGCY	6 cut(s)	82, 137, 148, 176, 185, 450
CviKI_1	RGCY	6 cut(s)	82, 137, 148, 176, 185, 450
CviQI	GTAC	1 cut(s)	61
Eam1104I	CTCTTC	2 cut(s)	165, 373
EarI	CTCTTC	2 cut(s)	165, 373
Ecl136II	GAGCTC	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	83
Eco24I	GRGCYC	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	424
Eco53kI	GAGCTC	1 cut(s)	137
Eco72I	CACGTG	1 cut(s)	242
EcoICRI	GAGCTC	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	424
EcoT14I	CCWWGG	1 cut(s)	83
EcoT38I	GRGCYC	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	83
FaeI	CATG	3 cut(s)	87, 128, 251
FaiI	YATR	4 cut(s)	85, 126, 189, 249
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	3 cut(s)	83, 124, 247
Fnu4HI	GCNGC	5 cut(s)	25, 99, 177, 198, 270
FokI	GGATG	2 cut(s)	292, 301
FriOI	GRGCYC	1 cut(s)	139
Fsp4HI	GCNGC	5 cut(s)	25, 99, 177, 198, 270
FspBI	CTAG	3 cut(s)	180, 363, 451
GluI	GCNGC	5 cut(s)	25, 99, 177, 198, 270
HaeIII	GGCC	1 cut(s)	82
Hin1II	CATG	3 cut(s)	87, 128, 251
HinfI	GANTC	2 cut(s)	11, 113
HphI	GGTGA	1 cut(s)	279
Hpy188III	TCNNGA	2 cut(s)	391, 431
HpyAV	CCTTC	5 cut(s)	35, 72, 125, 347, 437
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	3 cut(s)	167, 224, 343
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 182, 253, 275
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	3 cut(s)	87, 128, 251
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	3 cut(s)	270, 388, 427
Lsp1109I	GCAGC	5 cut(s)	36, 110, 163, 184, 256
LweI	GCATC	1 cut(s)	335
MaeI	CTAG	3 cut(s)	180, 363, 451
MaeII	ACGT	1 cut(s)	241
MboII	GAAGA	6 cut(s)	182, 285, 291, 324, 379, 390
MhlI	GDGCHC	2 cut(s)	139, 220
MluCI	AATT	1 cut(s)	225
MlyI	GAGTC	1 cut(s)	5
MnlI	CCTC	8 cut(s)	14, 59, 66, 114, 166, 204, 295, 415
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	4 cut(s)	173, 182, 253, 275
NcoI	CCATGG	1 cut(s)	83
NlaIII	CATG	3 cut(s)	87, 128, 251
PfeI	GAWTC	1 cut(s)	113
PkrI	GCNGC	5 cut(s)	26, 100, 178, 199, 271
PleI	GAGTC	1 cut(s)	5
PmaCI	CACGTG	1 cut(s)	242
PmlI	CACGTG	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	5
Ppu21I	YACGTR	1 cut(s)	242
PpuMI	RGGWCCY	1 cut(s)	424
Psp124BI	GAGCTC	1 cut(s)	139
Psp5II	RGGWCCY	1 cut(s)	424
PspCI	CACGTG	1 cut(s)	242
PspPI	GGNCC	1 cut(s)	424
PspPPI	RGGWCCY	1 cut(s)	424
PstI	CTGCAG	1 cut(s)	169
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SacI	GAGCTC	1 cut(s)	139
SatI	GCNGC	5 cut(s)	25, 99, 177, 198, 270
Sau96I	GGNCC	1 cut(s)	424
SchI	GAGTC	1 cut(s)	5
SduI	GDGCHC	2 cut(s)	139, 220
SetI	ASST	4 cut(s)	139, 244, 417, 429
SfaNI	GCATC	1 cut(s)	335
SfcI	CTRYAG	1 cut(s)	165
SinI	GGWCC	1 cut(s)	424
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	1 cut(s)	225
SspMI	CTAG	3 cut(s)	180, 363, 451
SstI	GAGCTC	1 cut(s)	139
StyI	CCWWGG	1 cut(s)	83
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	2 cut(s)	206, 390
TasI	AATT	1 cut(s)	225
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	113
TscAI	CASTG	2 cut(s)	169, 199
TseI	GCWGC	5 cut(s)	24, 98, 176, 197, 269
TspDTI	ATGAA	1 cut(s)	285
TspRI	CASTG	2 cut(s)	169, 199
VpaK11BI	GGWCC	1 cut(s)	424
XspI	CTAG	3 cut(s)	180, 363, 451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.