MD10G1185100.v1.1

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0005523
Physical Location & Seq
Reverse (-)
27919010 .. 27919447
438 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1185100.v1.1.491

Sequence Viewer

Length: 438 bp
ATGGAAAGAGGCCAAAGCAAAGGCAAAGCTAAAGAAGAGGGACAGAGAGATATGAGGTATAGAGGTGTGAGAACAAGGCCGTGGGGGAAATTCGCAGCCGAAATACACGATTCGACGAGGCAGGGAGGTTGGTTGTGGCTTGGCACCTTCAATACTGCTGAAGAAGCTGCAAGGGCTTATGATAGAGCTGCTTTTTCCATGAGGGGTCCTCTTGCAATTCTCAATTGTCCAAGTGAACATGGTTTGAAAGATGCACGTCACTCTGCTGTTACTACTTCCTCGTCATCTTCTTCGTCTTCATCTTCTTTTTCATCGTCTTTGAGAATCCATAATGCGACCAGGACAGAATTCGGAAGAGAAATCTTCGAGTTTGAGTGTTTAGATGATAGTGTTTTAGAGGACCTTCTTGATTTTGAGAATAATAGCAAAAGTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

146

Amino Acids

16.23

Weight (kDa)

6.91

Isoelectric Point (pI)

53.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 19 - 69 4e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 143
AcsI RAATTY 2 cut(s) 89, 347
AcuI CTGAAG 1 cut(s) 180
AgsI TTSAA 2 cut(s) 151, 247
AjiI CACGTC 1 cut(s) 257
AjnI CCWGG 1 cut(s) 338
AluBI AGCT 3 cut(s) 29, 167, 188
AluI AGCT 3 cut(s) 29, 167, 188
AoxI GGCC 2 cut(s) 10, 77
ApeKI GCWGC 3 cut(s) 95, 167, 188
ApoI RAATTY 2 cut(s) 89, 347
AspS9I GGNCC 2 cut(s) 206, 400
AvaII GGWCC 2 cut(s) 206, 400
BanI GGYRCC 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 288
BbvI GCAGC 3 cut(s) 107, 154, 175
BceAI ACGGC 1 cut(s) 64
BciT130I CCWGG 1 cut(s) 340
BisI GCNGC 3 cut(s) 96, 168, 189
BlsI GCNGC 3 cut(s) 97, 169, 190
Bme1390I CCNGG 1 cut(s) 340
Bme18I GGWCC 2 cut(s) 206, 400
BmgBI CACGTC 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 206, 400
BmiI GGNNCC 2 cut(s) 145, 207
BmrFI CCNGG 1 cut(s) 340
BmsI GCATC 1 cut(s) 241
BpiI GAAGAC 1 cut(s) 288
BplI GAGNNNNNCTC 2 cut(s) 193, 225
BsaJI CCNNGG 1 cut(s) 80
BseBI CCWGG 1 cut(s) 340
BseDI CCNNGG 1 cut(s) 80
BseXI GCAGC 3 cut(s) 107, 154, 175
BshFI GGCC 2 cut(s) 12, 79
BshNI GGYRCC 1 cut(s) 143
BslFI GGGAC 1 cut(s) 54
BsmFI GGGAC 1 cut(s) 54
BsnI GGCC 2 cut(s) 12, 79
BspANI GGCC 2 cut(s) 12, 79
BspLI GGNNCC 2 cut(s) 145, 207
BspT107I GGYRCC 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 340
Bst6I CTCTTC 2 cut(s) 30, 349
BstDSI CCRYGG 1 cut(s) 80
BstMWI GCNNNNNNNGC 2 cut(s) 164, 173
BstNI CCWGG 1 cut(s) 340
BstSCI CCNGG 1 cut(s) 338
BstV1I GCAGC 3 cut(s) 107, 154, 175
BstV2I GAAGAC 1 cut(s) 288
BsuRI GGCC 2 cut(s) 12, 79
BtgI CCRYGG 1 cut(s) 80
BtrI CACGTC 1 cut(s) 257
Cfr13I GGNCC 2 cut(s) 206, 400
CviAII CATG 2 cut(s) 199, 239
CviJI RGCY 8 cut(s) 12, 29, 79, 98, 139, 167, 176, 188
CviKI_1 RGCY 8 cut(s) 12, 29, 79, 98, 139, 167, 176, 188
Eam1104I CTCTTC 2 cut(s) 30, 349
EarI CTCTTC 2 cut(s) 30, 349
Eco47I GGWCC 2 cut(s) 206, 400
Eco57I CTGAAG 1 cut(s) 180
EcoO109I RGGNCCY 2 cut(s) 206, 400
EcoRI GAATTC 1 cut(s) 347
EcoRII CCWGG 1 cut(s) 338
FaeI CATG 2 cut(s) 202, 242
FaiI YATR 6 cut(s) 53, 60, 180, 200, 240, 330
FaqI GGGAC 1 cut(s) 54
FatI CATG 2 cut(s) 198, 238
Fnu4HI GCNGC 3 cut(s) 96, 168, 189
Fsp4HI GCNGC 3 cut(s) 96, 168, 189
GluI GCNGC 3 cut(s) 96, 168, 189
HaeIII GGCC 2 cut(s) 12, 79
Hin1II CATG 2 cut(s) 202, 242
HinfI GANTC 2 cut(s) 110, 324
Hpy166II GTNNAC 1 cut(s) 236
Hpy188I TCNGA 1 cut(s) 353
Hpy188III TCNNGA 1 cut(s) 407
Hpy8I GTNNAC 1 cut(s) 236
Hpy99I CGWCG 1 cut(s) 118
HpyAV CCTTC 2 cut(s) 157, 413
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 3 cut(s) 170, 215, 254
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 173
HpySE526I ACGT 1 cut(s) 256
Hsp92II CATG 2 cut(s) 202, 242
LpnPI CCDG 3 cut(s) 107, 325, 352
Lsp1109I GCAGC 3 cut(s) 107, 154, 175
LweI GCATC 1 cut(s) 241
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 2 cut(s) 257, 268
MboII GAAGA 8 cut(s) 47, 173, 279, 282, 288, 294, 355, 366
MfeI CAATTG 1 cut(s) 223
MluCI AATT 4 cut(s) 89, 216, 223, 347
MnlI CCTC 9 cut(s) 31, 48, 56, 111, 119, 195, 219, 289, 391
MspR9I CCNGG 1 cut(s) 340
MunI CAATTG 1 cut(s) 223
MvaI CCWGG 1 cut(s) 340
MwoI GCNNNNNNNGC 2 cut(s) 164, 173
NlaIII CATG 2 cut(s) 202, 242
NlaIV GGNNCC 2 cut(s) 145, 207
NmuCI GTSAC 1 cut(s) 257
PfeI GAWTC 2 cut(s) 110, 324
PkrI GCNGC 3 cut(s) 97, 169, 190
PpuMI RGGWCCY 2 cut(s) 206, 400
Psp5II RGGWCCY 2 cut(s) 206, 400
Psp6I CCWGG 1 cut(s) 338
PspGI CCWGG 1 cut(s) 338
PspN4I GGNNCC 2 cut(s) 145, 207
PspPI GGNCC 2 cut(s) 206, 400
PspPPI RGGWCCY 2 cut(s) 206, 400
SatI GCNGC 3 cut(s) 96, 168, 189
Sau96I GGNCC 2 cut(s) 206, 400
ScrFI CCNGG 1 cut(s) 340
SetI ASST 9 cut(s) 31, 59, 67, 130, 149, 169, 190, 259, 405
SfaNI GCATC 1 cut(s) 241
SinI GGWCC 2 cut(s) 206, 400
Sse9I AATT 4 cut(s) 89, 216, 223, 347
StyD4I CCNGG 1 cut(s) 338
TaiI ACGT 1 cut(s) 259
TaqI TCGA 2 cut(s) 113, 366
TasI AATT 4 cut(s) 89, 216, 223, 347
TfiI GAWTC 2 cut(s) 110, 324
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 3 cut(s) 95, 167, 188
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 2 cut(s) 288, 300
VpaK11BI GGWCC 2 cut(s) 206, 400
XapI RAATTY 2 cut(s) 89, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.