Rh6BG311900

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0005523
Physical Location & Seq
Reverse (-)
54157818 .. 54158270
453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG311900.1

Sequence Viewer

Length: 453 bp
ATGGAAGGAAACTCAAGTAGAGGCAGCAAGGCAAAACAAGAGGGACAGAAAGAAGTCAAGTACAGAGGAGTGAGGAGAAGGCCATGGGGGAAGTTCGCAGCAGAAATACGCGATTCAACGAGGCATGGAGAAGGAGCTCGGTTGTGGCTTGGGACTTTCAACACTGCAGAAGAGGCTGCAAGGGCTTATGACAGTGCTGCTTTTTCGATGAGGGGTGCTCTTGCAATTCTCAACTTCCCACGTGAGCATGGTTTGCCAGATAGTTCTGCTGCTTCTGCTGTTTCCTCACCATCTTCATCTTCGTCATCCCCAACATCCATTTCAGCATCATCTTCAACAATGCAGAATGTGGAAGGCACAACTAGGACAGAACCCAGAAGAGAAGTCTTCGAGATTGAGTGTTTAGATGACAAGGTTTTAGAGGACCTTCTTGATTTTGACAGGAAAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

150

Amino Acids

16.37

Weight (kDa)

6.75

Isoelectric Point (pI)

60.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 20 - 72 8.8e-16 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 111
AcvI CACGTG 1 cut(s) 242
AfaI GTAC 1 cut(s) 62
AgsI TTSAA 3 cut(s) 117, 160, 336
AjuI GAANNNNNNNTTGG 2 cut(s) 304, 336
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
Alw21I GWGCWC 2 cut(s) 139, 220
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 5 cut(s) 24, 98, 176, 197, 269
AspS9I GGNCC 1 cut(s) 424
AsuHPI GGTGA 1 cut(s) 279
AvaII GGWCC 1 cut(s) 424
BanII GRGCYC 1 cut(s) 139
BbrPI CACGTG 1 cut(s) 242
BbsI GAAGAC 1 cut(s) 379
Bbv12I GWGCWC 2 cut(s) 139, 220
BbvI GCAGC 5 cut(s) 36, 110, 163, 184, 256
BccI CCATC 1 cut(s) 298
BfaI CTAG 2 cut(s) 363, 451
BfmI CTRYAG 1 cut(s) 165
BisI GCNGC 5 cut(s) 25, 99, 177, 198, 270
BlsI GCNGC 5 cut(s) 26, 100, 178, 199, 271
Bme18I GGWCC 1 cut(s) 424
BmgT120I GGNCC 1 cut(s) 424
BmsI GCATC 1 cut(s) 335
BpiI GAAGAC 1 cut(s) 379
BplI GAGNNNNNCTC 2 cut(s) 202, 234
BsaAI YACGTR 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 83
BseGI GGATG 2 cut(s) 305, 314
BseRI GAGGAG 2 cut(s) 81, 88
BseXI GCAGC 5 cut(s) 36, 110, 163, 184, 256
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 1 cut(s) 82
BsiHKAI GWGCWC 2 cut(s) 139, 220
BslFI GGGAC 2 cut(s) 57, 166
BsmFI GGGAC 2 cut(s) 57, 166
BsnI GGCC 1 cut(s) 82
Bsp1286I GDGCHC 2 cut(s) 139, 220
Bsp19I CCATGG 1 cut(s) 83
BspANI GGCC 1 cut(s) 82
BspFNI CGCG 1 cut(s) 111
BspMAI CTGCAG 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 194
Bst6I CTCTTC 2 cut(s) 165, 373
BstAPI GCANNNNNTGC 1 cut(s) 253
BstBAI YACGTR 1 cut(s) 242
BstDSI CCRYGG 1 cut(s) 83
BstF5I GGATG 2 cut(s) 305, 314
BstFNI CGCG 1 cut(s) 111
BstMWI GCNNNNNNNGC 4 cut(s) 173, 182, 253, 275
BstSFI CTRYAG 1 cut(s) 165
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 5 cut(s) 36, 110, 163, 184, 256
BstV2I GAAGAC 1 cut(s) 379
BsuRI GGCC 1 cut(s) 82
BtgI CCRYGG 1 cut(s) 83
BtsCI GGATG 2 cut(s) 305, 314
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 2 cut(s) 162, 199
Cfr13I GGNCC 1 cut(s) 424
Csp6I GTAC 1 cut(s) 61
CviAII CATG 3 cut(s) 84, 125, 248
CviJI RGCY 6 cut(s) 82, 137, 148, 176, 185, 450
CviKI_1 RGCY 6 cut(s) 82, 137, 148, 176, 185, 450
CviQI GTAC 1 cut(s) 61
Eam1104I CTCTTC 2 cut(s) 165, 373
EarI CTCTTC 2 cut(s) 165, 373
Ecl136II GAGCTC 1 cut(s) 137
Eco130I CCWWGG 1 cut(s) 83
Eco24I GRGCYC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 424
Eco53kI GAGCTC 1 cut(s) 137
Eco72I CACGTG 1 cut(s) 242
EcoICRI GAGCTC 1 cut(s) 137
EcoO109I RGGNCCY 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 83
EcoT38I GRGCYC 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 83
FaeI CATG 3 cut(s) 87, 128, 251
FaiI YATR 4 cut(s) 85, 126, 189, 249
FaqI GGGAC 2 cut(s) 57, 166
FatI CATG 3 cut(s) 83, 124, 247
Fnu4HI GCNGC 5 cut(s) 25, 99, 177, 198, 270
FokI GGATG 2 cut(s) 292, 301
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 5 cut(s) 25, 99, 177, 198, 270
FspBI CTAG 2 cut(s) 363, 451
GluI GCNGC 5 cut(s) 25, 99, 177, 198, 270
HaeIII GGCC 1 cut(s) 82
Hin1II CATG 3 cut(s) 87, 128, 251
HinfI GANTC 1 cut(s) 113
HphI GGTGA 1 cut(s) 279
Hpy188III TCNNGA 2 cut(s) 391, 431
HpyAV CCTTC 4 cut(s) 72, 125, 347, 437
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 4 cut(s) 167, 179, 224, 343
HpyF10VI GCNNNNNNNGC 4 cut(s) 173, 182, 253, 275
HpySE526I ACGT 1 cut(s) 241
Hsp92II CATG 3 cut(s) 87, 128, 251
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 3 cut(s) 270, 388, 427
Lsp1109I GCAGC 5 cut(s) 36, 110, 163, 184, 256
LweI GCATC 1 cut(s) 335
MaeI CTAG 2 cut(s) 363, 451
MaeII ACGT 1 cut(s) 241
MboII GAAGA 6 cut(s) 182, 285, 291, 324, 379, 390
MhlI GDGCHC 2 cut(s) 139, 220
MluCI AATT 1 cut(s) 225
MnlI CCTC 9 cut(s) 14, 34, 59, 66, 114, 166, 204, 295, 415
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 4 cut(s) 173, 182, 253, 275
NcoI CCATGG 1 cut(s) 83
NlaIII CATG 3 cut(s) 87, 128, 251
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 5 cut(s) 26, 100, 178, 199, 271
PmaCI CACGTG 1 cut(s) 242
PmlI CACGTG 1 cut(s) 242
Ppu21I YACGTR 1 cut(s) 242
PpuMI RGGWCCY 1 cut(s) 424
Psp124BI GAGCTC 1 cut(s) 139
Psp5II RGGWCCY 1 cut(s) 424
PspCI CACGTG 1 cut(s) 242
PspPI GGNCC 1 cut(s) 424
PspPPI RGGWCCY 1 cut(s) 424
PstI CTGCAG 1 cut(s) 169
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SacI GAGCTC 1 cut(s) 139
SatI GCNGC 5 cut(s) 25, 99, 177, 198, 270
Sau96I GGNCC 1 cut(s) 424
SduI GDGCHC 2 cut(s) 139, 220
SetI ASST 4 cut(s) 139, 244, 417, 429
SfaNI GCATC 1 cut(s) 335
SfcI CTRYAG 1 cut(s) 165
SinI GGWCC 1 cut(s) 424
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 1 cut(s) 225
SspMI CTAG 2 cut(s) 363, 451
SstI GAGCTC 1 cut(s) 139
StyI CCWWGG 1 cut(s) 83
TaaI ACNGT 1 cut(s) 194
TaiI ACGT 1 cut(s) 244
TaqI TCGA 2 cut(s) 206, 390
TasI AATT 1 cut(s) 225
TatI WGTACW 1 cut(s) 60
TfiI GAWTC 1 cut(s) 113
TscAI CASTG 2 cut(s) 169, 199
TseI GCWGC 5 cut(s) 24, 98, 176, 197, 269
TspDTI ATGAA 1 cut(s) 285
TspRI CASTG 2 cut(s) 169, 199
VpaK11BI GGWCC 1 cut(s) 424
XspI CTAG 2 cut(s) 363, 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.