Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005174

Physical Location & Seq

Genomic Coordinates Forward (+)

21636934 .. 21639410

Gene Structure 2477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g27180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGAGGTGATGAAGTCATTATCAGATGTTGCAGACTCCAAGCAACAACAGGAACAGCAGCAGCAGCAGCAACAACAACAAGAACAGCAGCAGCAGCAGCAACAACAACAACATTTCCATGTTTTGGCCGTAGATGACAGTGTTATAGATAGGAAGCTATTGGAGAGGCTCCTTAAAGGTTCTTCATACAAAGTGACTTGTGTGGACTCTGGGGACGAAGCTCTCAAATATCTGGGTTTGGTTGATCATGATTACCTAAAATCTGCAGATTCTTCTTCATCCACTCCCCCATCTCCTCAGCAGCAGTCATCAGAACTAGAGGGCTCAAAAGTCATCAATCTGATCATGACAGACTACTGTATGCCCGGGATGAGCGGCTATGATTTGCTGAAAAGGGTCAAGGGATCTTCTTGGAAAGATATACCAGTCGTAGTTATGTCTTCAGAGAATGTTCCTTCAAGAATTAACATGTGCTTGGAAGAAGGTGCTGAAGAGTTTCTCTTAAAGCCACTTCAGATATCAGACTTGAAGAAGCTTCAGCCTTACTTGCTCAAAACCCTTGACCAACCTTCTTGTAACAGTAGCACTGACAGTAGTAACGAGGATATTGGTGATGATGATGATGATCACAATGGCCAAAGCAACATCAGTGAGGAGATCAATAAGGGTAGCATGATGAATAATACTAATGCAAGTAGTATTAGCAAGAGGAAGGCAGTGTCAACTGAAACATCGGAGCGAATACCCAAGATGAAAGGTTTAGTTGTAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

258

Amino Acids

28.63

Weight (kDa)

4.76

Isoelectric Point (pI)

69.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	102 - 178	2.2e-13	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005174)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27180
malus_domestica	MD08G1161200.v1.1 MD15G1346400.v1.1
prunus_persica	Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1
pyrus_communis	pycom08g13860 pycom15g31040
rosa_chinensis	RchiOBHm_Chr5g0027891 RchiOBHm_Chr6g0296091
rosa_laevigata	RLG00000011733 RLG00000033051
rosa_multiflora	Rmu_sc0003139.1_g000038
rosa_roxburghii	Rroxscaffold_1G00051740 Rroxscaffold_7G00178190
rosa_rugosa	Rorug06G0257700
rosa_samantha	Rh5AG196600 Rh5BG194500 Rh5CG214400 Rh5DG196200 Rh6AG370500 Rh6BG377900 Rh6CG383500 Rh6DG370400
rosa_wichuraiana	Rw5G017890 Rw6G032290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	124
AccBSI	CCGCTC	1 cut(s)	375
AciI	CCGC	1 cut(s)	375
AclWI	GGATC	1 cut(s)	412
AcoI	YGGCCR	2 cut(s)	126, 634
AcuI	CTGAAG	4 cut(s)	426, 497, 510, 521
AfiI	CCNNNNNNNGG	1 cut(s)	124
AflIII	ACRYGT	1 cut(s)	468
AgsI	TTSAA	2 cut(s)	459, 529
AluBI	AGCT	3 cut(s)	157, 221, 535
AluI	AGCT	3 cut(s)	157, 221, 535
AlwI	GGATC	1 cut(s)	412
Ama87I	CYCGRG	1 cut(s)	365
AoxI	GGCC	2 cut(s)	126, 634
ApeKI	GCWGC	9 cut(s)	58, 61, 64, 67, 88, 91, 94, 97, 301
Asp700I	GAANNNNTTC	1 cut(s)	495
AsuC2I	CCSGG	2 cut(s)	366, 367
AsuHPI	GGTGA	2 cut(s)	19, 623
AvaI	CYCGRG	1 cut(s)	365
BalI	TGGCCA	1 cut(s)	636
BanII	GRGCYC	1 cut(s)	326
BbsI	GAAGAC	1 cut(s)	432
BbvCI	CCTCAGC	1 cut(s)	297
BbvI	GCAGC	9 cut(s)	70, 73, 76, 79, 100, 103, 106, 109, 313
BccI	CCATC	1 cut(s)	298
BceAI	ACGGC	1 cut(s)	113
BclI	TGATCA	3 cut(s)	244, 342, 625
BcnI	CCSGG	2 cut(s)	366, 367
BfaI	CTAG	1 cut(s)	317
BfmI	CTRYAG	1 cut(s)	264
Bme1390I	CCNGG	2 cut(s)	366, 367
BmeT110I	CYCGRG	1 cut(s)	365
BmiI	GGNNCC	1 cut(s)	170
BmrFI	CCNGG	2 cut(s)	366, 367
BpiI	GAAGAC	1 cut(s)	432
Bpu10I	CCTNAGC	1 cut(s)	297
BpuMI	CCSGG	2 cut(s)	366, 367
BsaBI	GATNNNNATC	1 cut(s)	624
BsaJI	CCNNGG	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	425
Bse8I	GATNNNNATC	1 cut(s)	624
BseDI	CCNNGG	1 cut(s)	365
BseGI	GGATG	2 cut(s)	278, 375
BseJI	GATNNNNATC	1 cut(s)	624
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	1 cut(s)	425
BseRI	GAGGAG	2 cut(s)	285, 668
BseXI	GCAGC	9 cut(s)	70, 73, 76, 79, 100, 103, 106, 109, 313
BshFI	GGCC	2 cut(s)	128, 636
BsiHKCI	CYCGRG	1 cut(s)	365
BsiSI	CCGG	1 cut(s)	366
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	2 cut(s)	128, 636
BsoBI	CYCGRG	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp143I	GATC	5 cut(s)	244, 342, 404, 625, 657
BspACI	CCGC	1 cut(s)	375
BspANI	GGCC	2 cut(s)	128, 636
BspCNI	CTCAG	1 cut(s)	310
BspHI	TCATGA	2 cut(s)	247, 345
BspLI	GGNNCC	1 cut(s)	170
BspMAI	CTGCAG	1 cut(s)	268
BspPI	GGATC	1 cut(s)	412
BsrBI	CCGCTC	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	425
BssECI	CCNNGG	1 cut(s)	365
BssMI	GATC	5 cut(s)	244, 342, 404, 625, 657
Bst4CI	ACNGT	4 cut(s)	140, 359, 581, 593
Bst6I	CTCTTC	1 cut(s)	486
BstDEI	CTNAG	1 cut(s)	297
BstF5I	GGATG	2 cut(s)	278, 375
BstKTI	GATC	5 cut(s)	247, 345, 407, 628, 660
BstMBI	GATC	5 cut(s)	244, 342, 404, 625, 657
BstMWI	GCNNNNNNNGC	5 cut(s)	64, 67, 94, 97, 547
BstNSI	RCATGY	1 cut(s)	472
BstSCI	CCNGG	2 cut(s)	364, 365
BstSFI	CTRYAG	1 cut(s)	264
BstV1I	GCAGC	9 cut(s)	70, 73, 76, 79, 100, 103, 106, 109, 313
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	1 cut(s)	404
BstYI	RGATCY	1 cut(s)	404
BsuRI	GGCC	2 cut(s)	128, 636
BtsCI	GGATG	2 cut(s)	278, 375
BtsI	GCAGTG	1 cut(s)	723
BtsIMutI	CAGTG	4 cut(s)	145, 585, 655, 723
CciI	TCATGA	2 cut(s)	247, 345
Cfr9I	CCCGGG	1 cut(s)	365
CviAII	CATG	5 cut(s)	119, 248, 346, 469, 673
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	5 cut(s)	246, 344, 406, 627, 659
DpnII	GATC	5 cut(s)	244, 342, 404, 625, 657
EaeI	YGGCCR	2 cut(s)	126, 634
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
Eco24I	GRGCYC	1 cut(s)	326
Eco32I	GATATC	1 cut(s)	519
Eco57I	CTGAAG	4 cut(s)	426, 497, 510, 521
Eco88I	CYCGRG	1 cut(s)	365
EcoRV	GATATC	1 cut(s)	519
EcoT38I	GRGCYC	1 cut(s)	326
FaeI	CATG	5 cut(s)	122, 251, 349, 472, 676
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	5 cut(s)	118, 247, 345, 468, 672
FbaI	TGATCA	3 cut(s)	244, 342, 625
FokI	GGATG	2 cut(s)	265, 382
FriOI	GRGCYC	1 cut(s)	326
FspBI	CTAG	1 cut(s)	317
HaeIII	GGCC	2 cut(s)	128, 636
HapII	CCGG	1 cut(s)	366
Hin1II	CATG	5 cut(s)	122, 251, 349, 472, 676
HincII	GTYRAC	1 cut(s)	723
HindII	GTYRAC	1 cut(s)	723
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	3 cut(s)	35, 206, 269
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	2 cut(s)	19, 623
Hpy166II	GTNNAC	2 cut(s)	205, 723
Hpy188I	TCNGA	7 cut(s)	25, 313, 342, 445, 516, 523, 736
Hpy188III	TCNNGA	3 cut(s)	248, 346, 459
Hpy8I	GTNNAC	2 cut(s)	205, 723
HpyAV	CCTTC	4 cut(s)	465, 476, 579, 706
HpyCH4III	ACNGT	4 cut(s)	140, 359, 581, 593
HpyCH4V	TGCA	3 cut(s)	32, 266, 692
HpyF10VI	GCNNNNNNNGC	5 cut(s)	64, 67, 94, 97, 547
HpyF3I	CTNAG	1 cut(s)	297
Hsp92II	CATG	5 cut(s)	122, 251, 349, 472, 676
Ksp22I	TGATCA	3 cut(s)	244, 342, 625
Kzo9I	GATC	5 cut(s)	244, 342, 404, 625, 657
LmnI	GCTCC	2 cut(s)	174, 736
LpnPI	CCDG	5 cut(s)	35, 195, 218, 379, 438
Lsp1109I	GCAGC	9 cut(s)	70, 73, 76, 79, 100, 103, 106, 109, 313
MaeI	CTAG	1 cut(s)	317
MaeIII	GTNAC	3 cut(s)	193, 575, 596
MalI	GATC	5 cut(s)	246, 344, 406, 627, 659
MbiI	CCGCTC	1 cut(s)	375
MboI	GATC	5 cut(s)	244, 342, 404, 625, 657
MboII	GAAGA	8 cut(s)	174, 264, 267, 399, 432, 491, 503, 541
MflI	RGATCY	1 cut(s)	404
MhlI	GDGCHC	1 cut(s)	326
MlsI	TGGCCA	1 cut(s)	636
MluCI	AATT	1 cut(s)	462
MluNI	TGGCCA	1 cut(s)	636
MlyI	GAGTC	2 cut(s)	29, 200
MnlI	CCTC	6 cut(s)	159, 306, 313, 595, 646, 702
Mox20I	TGGCCA	1 cut(s)	636
MroXI	GAANNNNTTC	1 cut(s)	495
MscI	TGGCCA	1 cut(s)	636
MseI	TTAA	3 cut(s)	174, 465, 503
MslI	CAYNNNNRTG	1 cut(s)	117
Msp20I	TGGCCA	1 cut(s)	636
MspI	CCGG	1 cut(s)	366
MspR9I	CCNGG	2 cut(s)	366, 367
MwoI	GCNNNNNNNGC	5 cut(s)	64, 67, 94, 97, 547
NciI	CCSGG	2 cut(s)	366, 367
NdeII	GATC	5 cut(s)	244, 342, 404, 625, 657
NlaIII	CATG	5 cut(s)	122, 251, 349, 472, 676
NlaIV	GGNNCC	1 cut(s)	170
NmuCI	GTSAC	1 cut(s)	193
NspI	RCATGY	1 cut(s)	472
PagI	TCATGA	2 cut(s)	247, 345
PciI	ACATGT	1 cut(s)	468
PdmI	GAANNNNTTC	1 cut(s)	495
PfeI	GAWTC	1 cut(s)	269
PflMI	CCANNNNNTGG	1 cut(s)	124
PleI	GAGTC	2 cut(s)	29, 200
PpsI	GAGTC	2 cut(s)	29, 200
PscI	ACATGT	1 cut(s)	468
PspN4I	GGNNCC	1 cut(s)	170
PstI	CTGCAG	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	404
RseI	CAYNNNNRTG	1 cut(s)	117
SaqAI	TTAA	3 cut(s)	174, 465, 503
Sau3AI	GATC	5 cut(s)	244, 342, 404, 625, 657
SchI	GAGTC	2 cut(s)	29, 200
ScrFI	CCNGG	2 cut(s)	366, 367
SduI	GDGCHC	1 cut(s)	326
SetI	ASST	9 cut(s)	9, 159, 181, 223, 258, 487, 537, 571, 760
SfcI	CTRYAG	1 cut(s)	264
SmaI	CCCGGG	1 cut(s)	367
SmiMI	CAYNNNNRTG	1 cut(s)	117
Sse9I	AATT	1 cut(s)	462
SsiI	CCGC	1 cut(s)	375
SspMI	CTAG	1 cut(s)	317
StyD4I	CCNGG	2 cut(s)	364, 365
TaaI	ACNGT	4 cut(s)	140, 359, 581, 593
TasI	AATT	1 cut(s)	462
TauI	GCSGC	1 cut(s)	378
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	3 cut(s)	174, 465, 503
Tru9I	TTAA	3 cut(s)	174, 465, 503
TscAI	CASTG	4 cut(s)	145, 592, 655, 723
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	9 cut(s)	58, 61, 64, 67, 88, 91, 94, 97, 301
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	5 cut(s)	26, 174, 267, 692, 767
TspMI	CCCGGG	1 cut(s)	365
TspRI	CASTG	4 cut(s)	145, 592, 655, 723
Van91I	CCANNNNNTGG	1 cut(s)	124
XceI	RCATGY	1 cut(s)	472
XmaI	CCCGGG	1 cut(s)	365
XmnI	GAANNNNTTC	1 cut(s)	495
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.