Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0005174

Physical Location & Seq

Genomic Coordinates Reverse (-)

12784476 .. 12787493

Gene Structure 3018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g13860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTCGTCAGTTAGTCTGAAAATGGAGGTGGTGGTGAAGTCAGATGTTGCAGACCCCAAACAACAACAACAGCAGAACCAACATTTCCATGTATTGGCTGTAGATGACAGCCTTTTGGACAGGAAACTCCTGGAGAGGCTCCTTAGAGGTTCTTCATATGAAGTGACTTGTGTGGATTCTGGGGATGAAGCACTAAAATATCTGGGTTTGCTTGAAGACCTAAACCGAAGTACTGCAACTTCCTCTTCATCCAGCTCCCCTCAGTCATCAGATGTACCAGAGGGATCAAAAGCCATCAACTTGATCATGACGGACTTCTGTATGCCCGGAATGAGCGGCTATGATTTGCTGAAACGCGTCAAGGGATCTTCTTGGAAGGACGTACCAGTCGTGGTCATGTCATCAGAAAATGTTCCTTCAAGAATCAGCATGTGCTTGGAAGAAGGGGCAGAGGAGTTTCTGTTGAAGCCAGTCCAGTTGTCAGATCTGAAGAAGCTTCGGCCTTACCTGCTCAAATCCCTCCAACATTATTATTCTAACCACAATGAGGCTGGTGGTGAAAATGACCAAAATGACCAAAATGCCCAAACCAAAAGCACAACTGAGATGAATCATGTGAAGGGTACTACCATCAACAGCAATAGTATTAGCAAGAGGAAGGCCCAAACAATATCAGAGAGATCAAGGCCCAAGATGAAGGGATTACGTGTTCTAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

240

Amino Acids

26.54

Weight (kDa)

6.97

Isoelectric Point (pI)

59.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	31 - 165	7.8e-16	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005174)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27180
malus_domestica	MD08G1161200.v1.1 MD15G1346400.v1.1
prunus_persica	Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1
pyrus_communis	pycom08g13860 pycom15g31040
rosa_chinensis	RchiOBHm_Chr5g0027891 RchiOBHm_Chr6g0296091
rosa_laevigata	RLG00000011733 RLG00000033051
rosa_multiflora	Rmu_sc0003139.1_g000038
rosa_roxburghii	Rroxscaffold_1G00051740 Rroxscaffold_7G00178190
rosa_rugosa	Rorug06G0257700
rosa_samantha	Rh5AG196600 Rh5BG194500 Rh5CG214400 Rh5DG196200 Rh6AG370500 Rh6BG377900 Rh6CG383500 Rh6DG370400
rosa_wichuraiana	Rw5G017890 Rw6G032290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	386
Acc36I	ACCTGC	1 cut(s)	516
AccB7I	CCANNNNNTGG	1 cut(s)	94
AccBSI	CCGCTC	1 cut(s)	336
AccII	CGCG	1 cut(s)	357
AciI	CCGC	1 cut(s)	336
AclWI	GGATC	2 cut(s)	292, 373
AcuI	CTGAAG	1 cut(s)	509
AfaI	GTAC	4 cut(s)	232, 276, 384, 625
AfiI	CCNNNNNNNGG	2 cut(s)	94, 547
AflIII	ACRYGT	2 cut(s)	355, 706
AgsI	TTSAA	3 cut(s)	215, 420, 466
AjnI	CCWGG	1 cut(s)	129
AloI	GAACNNNNNNTCC	1 cut(s)	693
AluBI	AGCT	2 cut(s)	255, 496
AluI	AGCT	2 cut(s)	255, 496
AlwI	GGATC	2 cut(s)	292, 373
AoxI	GGCC	3 cut(s)	500, 660, 686
Asp700I	GAANNNNTTC	1 cut(s)	411
AspS9I	GGNCC	2 cut(s)	661, 687
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	2 cut(s)	46, 569
BarI	GAAGNNNNNNTAC	2 cut(s)	223, 255
BbsI	GAAGAC	1 cut(s)	222
BccI	CCATC	2 cut(s)	302, 638
BciT130I	CCWGG	1 cut(s)	131
BclI	TGATCA	1 cut(s)	303
BcnI	CCSGG	1 cut(s)	327
BfaI	CTAG	1 cut(s)	713
BfmI	CTRYAG	1 cut(s)	99
BfuAI	ACCTGC	1 cut(s)	516
BglII	AGATCT	1 cut(s)	484
BisI	GCNGC	1 cut(s)	337
BlsI	GCNGC	1 cut(s)	338
BmcAI	AGTACT	1 cut(s)	232
Bme1390I	CCNGG	2 cut(s)	131, 327
BmgT120I	GGNCC	2 cut(s)	661, 687
BmiI	GGNNCC	1 cut(s)	140
BmrFI	CCNGG	2 cut(s)	131, 327
BpiI	GAAGAC	1 cut(s)	222
BpmI	CTGGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	327
BsaAI	YACGTR	1 cut(s)	707
BsaXI	ACNNNNNCTCC	2 cut(s)	446, 476
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 547
Bse1I	ACTGG	3 cut(s)	386, 470, 475
BseBI	CCWGG	1 cut(s)	131
BseGI	GGATG	2 cut(s)	190, 248
BseLI	CCNNNNNNNGG	2 cut(s)	94, 547
BseMII	CTCAG	2 cut(s)	275, 594
BseNI	ACTGG	3 cut(s)	386, 470, 475
BseRI	GAGGAG	1 cut(s)	467
Bsh1236I	CGCG	1 cut(s)	357
BshFI	GGCC	3 cut(s)	502, 662, 688
BsiSI	CCGG	1 cut(s)	327
BslI	CCNNNNNNNGG	2 cut(s)	94, 547
BsnI	GGCC	3 cut(s)	502, 662, 688
Bsp143I	GATC	5 cut(s)	284, 303, 365, 484, 680
BspACI	CCGC	1 cut(s)	336
BspANI	GGCC	3 cut(s)	502, 662, 688
BspCNI	CTCAG	2 cut(s)	274, 595
BspFNI	CGCG	1 cut(s)	357
BspHI	TCATGA	1 cut(s)	306
BspLI	GGNNCC	1 cut(s)	140
BspMI	ACCTGC	1 cut(s)	516
BspPI	GGATC	2 cut(s)	292, 373
BsrBI	CCGCTC	1 cut(s)	336
BsrI	ACTGG	3 cut(s)	386, 470, 475
BssMI	GATC	5 cut(s)	284, 303, 365, 484, 680
Bst2UI	CCWGG	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	250
BstBAI	YACGTR	1 cut(s)	707
BstDEI	CTNAG	3 cut(s)	143, 261, 603
BstF5I	GGATG	2 cut(s)	190, 248
BstFNI	CGCG	1 cut(s)	357
BstKTI	GATC	5 cut(s)	287, 306, 368, 487, 683
BstMBI	GATC	5 cut(s)	284, 303, 365, 484, 680
BstMWI	GCNNNNNNNGC	1 cut(s)	508
BstNI	CCWGG	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	433
BstSCI	CCNGG	2 cut(s)	129, 325
BstSFI	CTRYAG	1 cut(s)	99
BstUI	CGCG	1 cut(s)	357
BstV2I	GAAGAC	1 cut(s)	222
BstX2I	RGATCY	2 cut(s)	365, 484
BstYI	RGATCY	2 cut(s)	365, 484
BsuRI	GGCC	3 cut(s)	502, 662, 688
BtsCI	GGATG	2 cut(s)	190, 248
BveI	ACCTGC	1 cut(s)	516
CciI	TCATGA	1 cut(s)	306
Cfr13I	GGNCC	2 cut(s)	661, 687
CseI	GACGC	1 cut(s)	346
Csp6I	GTAC	4 cut(s)	231, 275, 383, 624
CviAII	CATG	5 cut(s)	89, 307, 397, 430, 614
CviQI	GTAC	4 cut(s)	231, 275, 383, 624
DdeI	CTNAG	3 cut(s)	143, 261, 603
DpnI	GATC	5 cut(s)	286, 305, 367, 486, 682
DpnII	GATC	5 cut(s)	284, 303, 365, 484, 680
DrdI	GACNNNNNNGTC	1 cut(s)	386
DseDI	GACNNNNNNGTC	1 cut(s)	386
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	509
EcoRII	CCWGG	1 cut(s)	129
FaeI	CATG	5 cut(s)	92, 310, 400, 433, 617
FatI	CATG	5 cut(s)	88, 306, 396, 429, 613
FauNDI	CATATG	1 cut(s)	157
FbaI	TGATCA	1 cut(s)	303
Fnu4HI	GCNGC	1 cut(s)	337
FokI	GGATG	2 cut(s)	197, 235
Fsp4HI	GCNGC	1 cut(s)	337
FspBI	CTAG	1 cut(s)	713
GluI	GCNGC	1 cut(s)	337
GsuI	CTGGAG	1 cut(s)	152
HaeIII	GGCC	3 cut(s)	502, 662, 688
HapII	CCGG	1 cut(s)	327
HgaI	GACGC	1 cut(s)	346
Hin1II	CATG	5 cut(s)	92, 310, 400, 433, 617
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	3 cut(s)	176, 423, 610
HpaII	CCGG	1 cut(s)	327
HphI	GGTGA	2 cut(s)	46, 569
Hpy188I	TCNGA	7 cut(s)	18, 43, 271, 406, 484, 489, 676
Hpy188III	TCNNGA	2 cut(s)	307, 420
HpyAV	CCTTC	6 cut(s)	370, 426, 437, 613, 652, 691
HpyCH4IV	ACGT	2 cut(s)	381, 706
HpyCH4V	TGCA	2 cut(s)	50, 236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	508
HpyF3I	CTNAG	3 cut(s)	143, 261, 603
HpySE526I	ACGT	2 cut(s)	381, 706
Hsp92II	CATG	5 cut(s)	92, 310, 400, 433, 617
Ksp22I	TGATCA	1 cut(s)	303
Kzo9I	GATC	5 cut(s)	284, 303, 365, 484, 680
LmnI	GCTCC	2 cut(s)	144, 260
MaeI	CTAG	1 cut(s)	713
MaeII	ACGT	2 cut(s)	381, 706
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	5 cut(s)	286, 305, 367, 486, 682
MbiI	CCGCTC	1 cut(s)	336
MboI	GATC	5 cut(s)	284, 303, 365, 484, 680
MboII	GAAGA	6 cut(s)	144, 227, 237, 360, 452, 502
MflI	RGATCY	2 cut(s)	365, 484
MluI	ACGCGT	1 cut(s)	355
MmeI	TCCRAC	1 cut(s)	547
MroXI	GAANNNNTTC	1 cut(s)	411
MslI	CAYNNNNRTG	1 cut(s)	87
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	2 cut(s)	131, 327
MvaI	CCWGG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	357
MwoI	GCNNNNNNNGC	1 cut(s)	508
NciI	CCSGG	1 cut(s)	327
NdeI	CATATG	1 cut(s)	157
NdeII	GATC	5 cut(s)	284, 303, 365, 484, 680
NlaIII	CATG	5 cut(s)	92, 310, 400, 433, 617
NlaIV	GGNNCC	1 cut(s)	140
NmuCI	GTSAC	1 cut(s)	163
NspI	RCATGY	1 cut(s)	433
PagI	TCATGA	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	1 cut(s)	387
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	3 cut(s)	176, 423, 610
PflMI	CCANNNNNTGG	1 cut(s)	94
PfoI	TCCNGGA	1 cut(s)	129
PkrI	GCNGC	1 cut(s)	338
Ppu21I	YACGTR	1 cut(s)	707
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	140
PspPI	GGNCC	2 cut(s)	661, 687
PsuI	RGATCY	2 cut(s)	365, 484
RsaI	GTAC	4 cut(s)	232, 276, 384, 625
RsaNI	GTAC	4 cut(s)	231, 275, 383, 624
RseI	CAYNNNNRTG	1 cut(s)	87
SatI	GCNGC	1 cut(s)	337
Sau3AI	GATC	5 cut(s)	284, 303, 365, 484, 680
Sau96I	GGNCC	2 cut(s)	661, 687
ScaI	AGTACT	1 cut(s)	232
ScrFI	CCNGG	2 cut(s)	131, 327
SetI	ASST	8 cut(s)	30, 151, 222, 257, 384, 498, 510, 709
SfcI	CTRYAG	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	87
SsiI	CCGC	1 cut(s)	336
SspMI	CTAG	1 cut(s)	713
StyD4I	CCNGG	2 cut(s)	129, 325
TaiI	ACGT	2 cut(s)	384, 709
TatI	WGTACW	1 cut(s)	230
TauI	GCSGC	1 cut(s)	339
TfiI	GAWTC	3 cut(s)	176, 423, 610
TseFI	GTSAC	1 cut(s)	163
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	6 cut(s)	144, 174, 201, 237, 623, 710
TspGWI	ACGGA	1 cut(s)	326
Van91I	CCANNNNNTGG	1 cut(s)	94
XceI	RCATGY	1 cut(s)	433
XcmI	CCANNNNNNNNNTGG	1 cut(s)	548
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	1 cut(s)	713
ZrmI	AGTACT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.