Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005174

Physical Location & Seq

Genomic Coordinates Forward (+)

22973679 .. 22976420

Gene Structure 2742 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G017890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGAGGTAGTGAAGTCATCAGAATTAGTTACAGCAGACTCCAAACAACAGCAACAGTTCCATCTGTTGCTTGCGGATGACAGTGAGCTGGACAGGAAACTCGGAGAGACGCTCCTTAAACGTTCTACCTTCAAAGCATTGACCTGTGTGGATTCTGGGGATGAAGCTCTTAAGACTTTAGGTTTGCTTGATATCGATCTAAACCAAAGTTCTTCGGATTCTACTCCAACCATTTCGCCGAATTCATCATCAGATCAAGAGGGACCATTCAATTTTATCATCACAGATTACTGTATGCCAGGGATGAGCGGTTATGATTTGCTGAAACGGATCAAGGGATCTTACTGGAAAGATGTACCAGTCGTGCTTATGTCAGCAGATAATGTACCTTCAAGGATTAGCATGTGCTTGGAAGAAGGGGCTGAGGCGTTTCCTTTGAAGCCACCAAAGTTATCAGATTTGAGAAAGCTAATTCAGCCTTACCTGATCAAATCACTCCACCATTCCGGTAACAACAACACTGACAGTAGTTTGGAGGTTGCTGATATCAATGACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

186

Amino Acids

20.51

Weight (kDa)

4.68

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	87 - 158	5.9e-12	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005174)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27180
malus_domestica	MD08G1161200.v1.1 MD15G1346400.v1.1
prunus_persica	Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1
pyrus_communis	pycom08g13860 pycom15g31040
rosa_chinensis	RchiOBHm_Chr5g0027891 RchiOBHm_Chr6g0296091
rosa_laevigata	RLG00000011733 RLG00000033051
rosa_multiflora	Rmu_sc0003139.1_g000038
rosa_roxburghii	Rroxscaffold_1G00051740 Rroxscaffold_7G00178190
rosa_rugosa	Rorug06G0257700
rosa_samantha	Rh5AG196600 Rh5BG194500 Rh5CG214400 Rh5DG196200 Rh6AG370500 Rh6BG377900 Rh6CG383500 Rh6DG370400
rosa_wichuraiana	Rw5G017890 Rw6G032290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	309
AciI	CCGC	2 cut(s)	74, 309
AclI	AACGTT	1 cut(s)	121
AclWI	GGATC	2 cut(s)	338, 346
AcsI	RAATTY	1 cut(s)	241
AfaI	GTAC	2 cut(s)	357, 387
AflII	CTTAAG	1 cut(s)	170
AgsI	TTSAA	4 cut(s)	133, 271, 393, 439
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	3 cut(s)	88, 167, 469
AluI	AGCT	3 cut(s)	88, 167, 469
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	2 cut(s)	338, 346
ApoI	RAATTY	1 cut(s)	241
ArsI	GACNNNNNNTTYG	2 cut(s)	166, 198
AspS9I	GGNCC	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	263
BbvCI	CCTCAGC	1 cut(s)	423
BccI	CCATC	1 cut(s)	69
BciT130I	CCWGG	1 cut(s)	300
BclI	TGATCA	1 cut(s)	486
BcoDI	GTCTC	1 cut(s)	101
BfrI	CTTAAG	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	300
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	300
BplI	GAGNNNNNCTC	2 cut(s)	96, 128
Bpu10I	CCTNAGC	1 cut(s)	423
Bsa29I	ATCGAT	1 cut(s)	195
BsaBI	GATNNNNATC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	299
BsaWI	WCCGGW	1 cut(s)	506
Bse1I	ACTGG	3 cut(s)	350, 359, 556
Bse8I	GATNNNNATC	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	300
BseCI	ATCGAT	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	299
BseGI	GGATG	3 cut(s)	82, 166, 309
BseJI	GATNNNNATC	1 cut(s)	195
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	3 cut(s)	350, 359, 556
BshVI	ATCGAT	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	507
BslFI	GGGAC	1 cut(s)	276
BsmAI	GTCTC	1 cut(s)	101
BsmBI	CGTCTC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	276
Bsp143I	GATC	5 cut(s)	196, 253, 330, 338, 486
BspACI	CCGC	2 cut(s)	74, 309
BspCNI	CTCAG	1 cut(s)	415
BspDI	ATCGAT	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	264
BspPI	GGATC	2 cut(s)	338, 346
BspTI	CTTAAG	1 cut(s)	170
BsrBI	CCGCTC	1 cut(s)	309
BsrI	ACTGG	3 cut(s)	350, 359, 556
BssECI	CCNNGG	1 cut(s)	299
BssMI	GATC	5 cut(s)	196, 253, 330, 338, 486
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	4 cut(s)	57, 83, 293, 527
BstAFI	CTTAAG	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	423
BstF5I	GGATG	3 cut(s)	82, 166, 309
BstKTI	GATC	5 cut(s)	199, 256, 333, 341, 489
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	5 cut(s)	196, 253, 330, 338, 486
BstMWI	GCNNNNNNNGC	1 cut(s)	475
BstNI	CCWGG	1 cut(s)	300
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	1 cut(s)	298
BstX2I	RGATCY	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	338
Bsu15I	ATCGAT	1 cut(s)	195
BsuTUI	ATCGAT	1 cut(s)	195
BtsCI	GGATG	3 cut(s)	82, 166, 309
BtsIMutI	CAGTG	2 cut(s)	88, 519
Cac8I	GCNNGC	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	263
ClaI	ATCGAT	1 cut(s)	195
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	2 cut(s)	356, 386
CviAII	CATG	1 cut(s)	403
CviJI	RGCY	6 cut(s)	88, 167, 422, 442, 469, 478
CviKI_1	RGCY	6 cut(s)	88, 167, 422, 442, 469, 478
CviQI	GTAC	2 cut(s)	356, 386
DdeI	CTNAG	1 cut(s)	423
DpnI	GATC	5 cut(s)	198, 255, 332, 340, 488
DpnII	GATC	5 cut(s)	196, 253, 330, 338, 486
Eco32I	GATATC	2 cut(s)	193, 547
Eco47I	GGWCC	1 cut(s)	263
EcoRI	GAATTC	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	298
EcoRV	GATATC	2 cut(s)	193, 547
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	1 cut(s)	406
FaiI	YATR	4 cut(s)	296, 315, 371, 404
FaqI	GGGAC	1 cut(s)	276
FatI	CATG	1 cut(s)	402
FbaI	TGATCA	1 cut(s)	486
FokI	GGATG	3 cut(s)	89, 173, 316
HapII	CCGG	1 cut(s)	507
HgaI	GACGC	1 cut(s)	118
Hin1II	CATG	1 cut(s)	406
HinfI	GANTC	3 cut(s)	38, 152, 218
HpaII	CCGG	1 cut(s)	507
Hpy188I	TCNGA	5 cut(s)	22, 104, 217, 253, 457
Hpy188III	TCNNGA	1 cut(s)	257
HpyAV	CCTTC	3 cut(s)	139, 399, 410
HpyCH4III	ACNGT	4 cut(s)	57, 83, 293, 527
HpyCH4IV	ACGT	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	475
HpyF3I	CTNAG	1 cut(s)	423
HpySE526I	ACGT	1 cut(s)	121
Hsp92II	CATG	1 cut(s)	406
Ksp22I	TGATCA	1 cut(s)	486
Kzo9I	GATC	5 cut(s)	196, 253, 330, 338, 486
LmnI	GCTCC	1 cut(s)	117
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	2 cut(s)	28, 509
MalI	GATC	5 cut(s)	198, 255, 332, 340, 488
MbiI	CCGCTC	1 cut(s)	309
MboI	GATC	5 cut(s)	196, 253, 330, 338, 486
MboII	GAAGA	2 cut(s)	204, 425
MflI	RGATCY	1 cut(s)	338
MluCI	AATT	4 cut(s)	23, 241, 271, 471
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	251
MnlI	CCTC	3 cut(s)	253, 418, 529
MseI	TTAA	2 cut(s)	117, 171
MspCI	CTTAAG	1 cut(s)	170
MspI	CCGG	1 cut(s)	507
MspR9I	CCNGG	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	1 cut(s)	475
NdeII	GATC	5 cut(s)	196, 253, 330, 338, 486
NlaIII	CATG	1 cut(s)	406
NlaIV	GGNNCC	1 cut(s)	264
NspI	RCATGY	1 cut(s)	406
PfeI	GAWTC	2 cut(s)	152, 218
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
Psp1406I	AACGTT	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	263
PsuI	RGATCY	1 cut(s)	338
RsaI	GTAC	2 cut(s)	357, 387
RsaNI	GTAC	2 cut(s)	356, 386
SaqAI	TTAA	2 cut(s)	117, 171
Sau3AI	GATC	5 cut(s)	196, 253, 330, 338, 486
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	300
SinI	GGWCC	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	4 cut(s)	23, 241, 271, 471
SsiI	CCGC	2 cut(s)	74, 309
StyD4I	CCNGG	1 cut(s)	298
TaaI	ACNGT	4 cut(s)	57, 83, 293, 527
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	1 cut(s)	195
TasI	AATT	4 cut(s)	23, 241, 271, 471
TfiI	GAWTC	2 cut(s)	152, 218
Tru1I	TTAA	2 cut(s)	117, 171
Tru9I	TTAA	2 cut(s)	117, 171
TscAI	CASTG	2 cut(s)	88, 526
TspDTI	ATGAA	2 cut(s)	177, 234
TspGWI	ACGGA	1 cut(s)	343
TspRI	CASTG	2 cut(s)	88, 526
Vha464I	CTTAAG	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	241
XceI	RCATGY	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.