Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005174

Physical Location & Seq

Genomic Coordinates Reverse (-)

40750391 .. 40753033

Gene Structure 2643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1346400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGAGGTGGTAGTGAAGTCAGATGTTGCAGACTTCAAACAACAGCAGCAGCAACCACAACAACATTTCCATGTATTGGCAGTGGATGATAGCATTTTGGACAGGAAGCTTTTGGAGAGGCTCCTCAGAGGCTCTTCTTATGAAGTGACTTGTGTGGACTCTGGGGATGAAGCACTAAAATATCTGGGTTTGCATGATGACCTAAACCAAAGTAGTACAACTTCCTCCTCATCCACTTCCCGTCAGTCATCAGATGTACTGGAGGGAGCAAAAGTCATCAACTTGATCATGACAGACTTCTGTATGCCCGGAATGAGCGGCTATGATTTGCTGAAACGCGTCAAGGGATCTTCTTGGAAAGATGTACCAGTCGTGGTCATGTCATCAGAGAATGTTCCTTCTAGAATCAACATGTGCCTGGAAGAAGGGGCAGAGGAGTTTCTGTTGAAGCCACTCCAGTTTTCAGATTTGAAGAAGCTTCAGCCTTACCTGCTCAAATCCCTCCGTCACTATTCTTCTATCGACAGTATTGACAACAGCGACGACAACAATGTCTCAGTGAAGGGGGAAGTTGGTGGTGGTGAGAATGACCAAACTGACCAAACCAAAAGCACTACCGAGATTAATCATGCCAGGGGTAATACCGTCAACAACAATATTGTTGGTATTAGCAGGAGGAAGGCCCAAACAATACCAGAGAGATCAAGGCCCACGATGAAGGGACTAGCTGTTCTAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

247

Amino Acids

27.25

Weight (kDa)

5.43

Isoelectric Point (pI)

53.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	85 - 159	2.1e-13	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005174)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27180
malus_domestica	MD08G1161200.v1.1 MD15G1346400.v1.1
prunus_persica	Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1
pyrus_communis	pycom08g13860 pycom15g31040
rosa_chinensis	RchiOBHm_Chr5g0027891 RchiOBHm_Chr6g0296091
rosa_laevigata	RLG00000011733 RLG00000033051
rosa_multiflora	Rmu_sc0003139.1_g000038
rosa_roxburghii	Rroxscaffold_1G00051740 Rroxscaffold_7G00178190
rosa_rugosa	Rorug06G0257700
rosa_samantha	Rh5AG196600 Rh5BG194500 Rh5CG214400 Rh5DG196200 Rh6AG370500 Rh6BG377900 Rh6CG383500 Rh6DG370400
rosa_wichuraiana	Rw5G017890 Rw6G032290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	551
Acc36I	ACCTGC	1 cut(s)	498
AccB7I	CCANNNNNTGG	1 cut(s)	76
AccBSI	CCGCTC	1 cut(s)	318
AccII	CGCG	1 cut(s)	339
AciI	CCGC	1 cut(s)	318
AclWI	GGATC	1 cut(s)	355
AcuI	CTGAAG	1 cut(s)	464
AfaI	GTAC	3 cut(s)	217, 258, 366
AfiI	CCNNNNNNNGG	1 cut(s)	76
AflIII	ACRYGT	2 cut(s)	337, 411
AgsI	TTSAA	3 cut(s)	37, 448, 472
AjnI	CCWGG	2 cut(s)	417, 632
AloI	GAACNNNNNNTCC	1 cut(s)	714
AluBI	AGCT	3 cut(s)	109, 478, 728
AluI	AGCT	3 cut(s)	109, 478, 728
Alw26I	GTCTC	1 cut(s)	559
AlwI	GGATC	1 cut(s)	355
AoxI	GGCC	2 cut(s)	681, 707
ApeKI	GCWGC	2 cut(s)	46, 49
AseI	ATTAAT	1 cut(s)	624
AspS9I	GGNCC	2 cut(s)	682, 708
AsuC2I	CCSGG	1 cut(s)	309
AsuHPI	GGTGA	1 cut(s)	593
BarI	GAAGNNNNNNTAC	2 cut(s)	205, 237
BbvI	GCAGC	2 cut(s)	58, 61
BciT130I	CCWGG	2 cut(s)	419, 634
BclI	TGATCA	1 cut(s)	285
BcnI	CCSGG	1 cut(s)	309
BcoDI	GTCTC	1 cut(s)	559
BfaI	CTAG	3 cut(s)	402, 725, 734
BfuAI	ACCTGC	1 cut(s)	498
BisI	GCNGC	3 cut(s)	47, 50, 319
BlsI	GCNGC	3 cut(s)	48, 51, 320
Bme1390I	CCNGG	3 cut(s)	309, 419, 634
BmgT120I	GGNCC	2 cut(s)	682, 708
BmiI	GGNNCC	1 cut(s)	122
BmrFI	CCNGG	3 cut(s)	309, 419, 634
BpmI	CTGGAG	2 cut(s)	281, 440
BpuMI	CCSGG	1 cut(s)	309
BsaJI	CCNNGG	1 cut(s)	633
BsaXI	ACNNNNNCTCC	4 cut(s)	258, 288, 428, 458
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	3 cut(s)	264, 368, 457
BseBI	CCWGG	2 cut(s)	419, 634
BseDI	CCNNGG	1 cut(s)	633
BseGI	GGATG	3 cut(s)	91, 172, 230
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMII	CTCAG	2 cut(s)	139, 570
BseNI	ACTGG	3 cut(s)	264, 368, 457
BseRI	GAGGAG	3 cut(s)	113, 217, 449
BseXI	GCAGC	2 cut(s)	58, 61
Bsh1236I	CGCG	1 cut(s)	339
BshFI	GGCC	2 cut(s)	683, 709
BsiSI	CCGG	1 cut(s)	309
BslFI	GGGAC	1 cut(s)	735
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	559
BsmFI	GGGAC	1 cut(s)	735
BsnI	GGCC	2 cut(s)	683, 709
Bsp143I	GATC	3 cut(s)	285, 347, 701
BspACI	CCGC	1 cut(s)	318
BspANI	GGCC	2 cut(s)	683, 709
BspCNI	CTCAG	2 cut(s)	138, 569
BspFNI	CGCG	1 cut(s)	339
BspHI	TCATGA	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	122
BspMI	ACCTGC	1 cut(s)	498
BspPI	GGATC	1 cut(s)	355
BspQI	GCTCTTC	1 cut(s)	139
BsrBI	CCGCTC	1 cut(s)	318
BsrI	ACTGG	3 cut(s)	264, 368, 457
BssECI	CCNNGG	1 cut(s)	633
BssMI	GATC	3 cut(s)	285, 347, 701
Bst2UI	CCWGG	2 cut(s)	419, 634
Bst4CI	ACNGT	2 cut(s)	527, 646
Bst6I	CTCTTC	1 cut(s)	139
BstDEI	CTNAG	2 cut(s)	125, 556
BstF5I	GGATG	3 cut(s)	91, 172, 230
BstFNI	CGCG	1 cut(s)	339
BstKTI	GATC	3 cut(s)	288, 350, 704
BstMAI	GTCTC	1 cut(s)	559
BstMBI	GATC	3 cut(s)	285, 347, 701
BstMWI	GCNNNNNNNGC	1 cut(s)	490
BstNI	CCWGG	2 cut(s)	419, 634
BstNSI	RCATGY	1 cut(s)	415
BstSCI	CCNGG	3 cut(s)	307, 417, 632
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	2 cut(s)	58, 61
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
BsuRI	GGCC	2 cut(s)	683, 709
BtsCI	GGATG	3 cut(s)	91, 172, 230
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	87, 564
BveI	ACCTGC	1 cut(s)	498
CciI	TCATGA	1 cut(s)	288
Cfr13I	GGNCC	2 cut(s)	682, 708
CseI	GACGC	1 cut(s)	328
Csp6I	GTAC	3 cut(s)	216, 257, 365
CviAII	CATG	6 cut(s)	71, 194, 289, 379, 412, 629
CviQI	GTAC	3 cut(s)	216, 257, 365
DdeI	CTNAG	2 cut(s)	125, 556
DpnI	GATC	3 cut(s)	287, 349, 703
DpnII	GATC	3 cut(s)	285, 347, 701
DrdI	GACNNNNNNGTC	1 cut(s)	551
DseDI	GACNNNNNNGTC	1 cut(s)	551
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	464
EcoRII	CCWGG	2 cut(s)	417, 632
FaeI	CATG	6 cut(s)	74, 197, 292, 382, 415, 632
FaqI	GGGAC	1 cut(s)	735
FatI	CATG	6 cut(s)	70, 193, 288, 378, 411, 628
FbaI	TGATCA	1 cut(s)	285
Fnu4HI	GCNGC	3 cut(s)	47, 50, 319
FokI	GGATG	3 cut(s)	98, 179, 217
Fsp4HI	GCNGC	3 cut(s)	47, 50, 319
FspBI	CTAG	3 cut(s)	402, 725, 734
GluI	GCNGC	3 cut(s)	47, 50, 319
GsuI	CTGGAG	2 cut(s)	281, 440
HaeIII	GGCC	2 cut(s)	683, 709
HapII	CCGG	1 cut(s)	309
HgaI	GACGC	1 cut(s)	328
Hin1II	CATG	6 cut(s)	74, 197, 292, 382, 415, 632
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HindIII	AAGCTT	2 cut(s)	107, 476
HinfI	GANTC	2 cut(s)	158, 405
HpaII	CCGG	1 cut(s)	309
HphI	GGTGA	1 cut(s)	593
Hpy166II	GTNNAC	2 cut(s)	157, 649
Hpy188I	TCNGA	5 cut(s)	22, 128, 253, 388, 466
Hpy188III	TCNNGA	2 cut(s)	289, 402
Hpy8I	GTNNAC	2 cut(s)	157, 649
Hpy99I	CGWCG	1 cut(s)	545
HpyAV	CCTTC	5 cut(s)	408, 419, 556, 673, 712
HpyCH4III	ACNGT	2 cut(s)	527, 646
HpyCH4V	TGCA	2 cut(s)	29, 193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	490
HpyF3I	CTNAG	2 cut(s)	125, 556
Hsp92II	CATG	6 cut(s)	74, 197, 292, 382, 415, 632
Ksp22I	TGATCA	1 cut(s)	285
Kzo9I	GATC	3 cut(s)	285, 347, 701
LguI	GCTCTTC	1 cut(s)	139
LmnI	GCTCC	2 cut(s)	126, 266
Lsp1109I	GCAGC	2 cut(s)	58, 61
MaeI	CTAG	3 cut(s)	402, 725, 734
MaeIII	GTNAC	2 cut(s)	145, 506
MalI	GATC	3 cut(s)	287, 349, 703
MbiI	CCGCTC	1 cut(s)	318
MboI	GATC	3 cut(s)	285, 347, 701
MboII	GAAGA	5 cut(s)	126, 342, 434, 484, 507
MflI	RGATCY	1 cut(s)	347
MluI	ACGCGT	1 cut(s)	337
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	9 cut(s)	111, 122, 134, 235, 238, 256, 427, 512, 669
MseI	TTAA	1 cut(s)	624
MslI	CAYNNNNRTG	1 cut(s)	69
MspI	CCGG	1 cut(s)	309
MspR9I	CCNGG	3 cut(s)	309, 419, 634
MvaI	CCWGG	2 cut(s)	419, 634
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	490
NciI	CCSGG	1 cut(s)	309
NdeII	GATC	3 cut(s)	285, 347, 701
NlaIII	CATG	6 cut(s)	74, 197, 292, 382, 415, 632
NlaIV	GGNNCC	1 cut(s)	122
NmuCI	GTSAC	2 cut(s)	145, 506
NspI	RCATGY	1 cut(s)	415
PagI	TCATGA	1 cut(s)	288
PciI	ACATGT	1 cut(s)	411
PciSI	GCTCTTC	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	405
PflMI	CCANNNNNTGG	1 cut(s)	76
PkrI	GCNGC	3 cut(s)	48, 51, 320
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PscI	ACATGT	1 cut(s)	411
PshBI	ATTAAT	1 cut(s)	624
Psp6I	CCWGG	2 cut(s)	417, 632
PspGI	CCWGG	2 cut(s)	417, 632
PspN4I	GGNNCC	1 cut(s)	122
PspPI	GGNCC	2 cut(s)	682, 708
PsuI	RGATCY	1 cut(s)	347
RsaI	GTAC	3 cut(s)	217, 258, 366
RsaNI	GTAC	3 cut(s)	216, 257, 365
RseI	CAYNNNNRTG	1 cut(s)	69
SapI	GCTCTTC	1 cut(s)	139
SaqAI	TTAA	1 cut(s)	624
SatI	GCNGC	3 cut(s)	47, 50, 319
Sau3AI	GATC	3 cut(s)	285, 347, 701
Sau96I	GGNCC	2 cut(s)	682, 708
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	3 cut(s)	309, 419, 634
SetI	ASST	6 cut(s)	9, 111, 204, 480, 492, 730
SmiMI	CAYNNNNRTG	1 cut(s)	69
SsiI	CCGC	1 cut(s)	318
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	3 cut(s)	402, 725, 734
StyD4I	CCNGG	3 cut(s)	307, 417, 632
TaaI	ACNGT	2 cut(s)	527, 646
TaqI	TCGA	1 cut(s)	522
TatI	WGTACW	2 cut(s)	215, 256
TauI	GCSGC	1 cut(s)	321
TfiI	GAWTC	1 cut(s)	405
Tru1I	TTAA	1 cut(s)	624
Tru9I	TTAA	1 cut(s)	624
TscAI	CASTG	2 cut(s)	87, 564
TseFI	GTSAC	2 cut(s)	145, 506
TseI	GCWGC	2 cut(s)	46, 49
Tsp45I	GTSAC	2 cut(s)	145, 506
TspDTI	ATGAA	3 cut(s)	156, 183, 731
TspGWI	ACGGA	1 cut(s)	494
TspRI	CASTG	2 cut(s)	87, 564
Van91I	CCANNNNNTGG	1 cut(s)	76
VspI	ATTAAT	1 cut(s)	624
XbaI	TCTAGA	1 cut(s)	401
XceI	RCATGY	1 cut(s)	415
XspI	CTAG	3 cut(s)	402, 725, 734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.