Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005174

Physical Location & Seq

Genomic Coordinates Forward (+)

57030173 .. 57033082

Gene Structure 2910 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG383500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAGGTAATGAAGTCATTATCCGATGTTGCAGACTCCAAGCAACAACAAGAACAGCAGCAGCAGCAGCAACATTTCCATGTTTTGGCTGTAGATGACAGTGTTATAGACAGGAAGCTATTGGAGAGGCTCCTCAAAGGTTCTTCATACAAAGTGACTTGTGTGGACTCTGGGGATGAAGCTCTTAAATATCTGGGTTTGATTGATCATGATGACCAAAAACCTACAGATTCATCTTCACTCACTTCCCCATATCCTCAGCAGTCGTCATCAGAACAAGAGGGCTCAAAAGTCATCAATCTGATCATGACAGACTACTGTATGCCCGGGATGAGCGGCTATGATTTGCTGAAAAGGGTCAAGGGATCTTCTTGGAAAGATATACCAGTCGTAGTCATGTCATCAGAGAATGTTCCCTCAAGAATTAACATGTGCTTGGAAGAAGGGGCTGAGGAGTTTCTCTTAAAGCCACTTCAGATATCAGATTTGAAGAAGCTTCAGCCTTACTTGCTTAAAACCCTTGACCAACCTTCTTCCAGCATTGACAGTAGCAACAATCTCGTAGTTGAGGAGATCGGTGATGATGATCACGATGGCCAAAGCAAAATCAATGAGGAGATCAATAAGGGTAGCGTGATGAATAATACTAATGCTAGTAGTATTAGCAAGAGGAAGGCAGTAACTACTGAAACATCAGACAGAATACCCAAGATGAAAGGTTTAGTTGTAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

244

Amino Acids

27.07

Weight (kDa)

4.87

Isoelectric Point (pI)

59.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	97 - 165	4.8e-13	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005174)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27180
malus_domestica	MD08G1161200.v1.1 MD15G1346400.v1.1
prunus_persica	Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1
pyrus_communis	pycom08g13860 pycom15g31040
rosa_chinensis	RchiOBHm_Chr5g0027891 RchiOBHm_Chr6g0296091
rosa_laevigata	RLG00000011733 RLG00000033051
rosa_multiflora	Rmu_sc0003139.1_g000038
rosa_roxburghii	Rroxscaffold_1G00051740 Rroxscaffold_7G00178190
rosa_rugosa	Rorug06G0257700
rosa_samantha	Rh5AG196600 Rh5BG194500 Rh5CG214400 Rh5DG196200 Rh6AG370500 Rh6BG377900 Rh6CG383500 Rh6DG370400
rosa_wichuraiana	Rw5G017890 Rw6G032290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	85
AccBSI	CCGCTC	1 cut(s)	336
AciI	CCGC	1 cut(s)	336
AclWI	GGATC	1 cut(s)	373
AcoI	YGGCCR	1 cut(s)	595
AcuI	CTGAAG	2 cut(s)	458, 482
AfiI	CCNNNNNNNGG	1 cut(s)	85
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	1 cut(s)	490
AluBI	AGCT	3 cut(s)	118, 182, 496
AluI	AGCT	3 cut(s)	118, 182, 496
AlwI	GGATC	1 cut(s)	373
Ama87I	CYCGRG	1 cut(s)	326
AoxI	GGCC	1 cut(s)	595
ApeKI	GCWGC	4 cut(s)	58, 61, 64, 67
AsuC2I	CCSGG	2 cut(s)	327, 328
AsuHPI	GGTGA	1 cut(s)	590
AvaI	CYCGRG	1 cut(s)	326
BalI	TGGCCA	1 cut(s)	597
BanII	GRGCYC	1 cut(s)	287
BbvCI	CCTCAGC	2 cut(s)	258, 450
BbvI	GCAGC	4 cut(s)	70, 73, 76, 79
BccI	CCATC	1 cut(s)	587
BcgI	CGANNNNNNTGC	2 cut(s)	541, 575
BclI	TGATCA	3 cut(s)	205, 303, 586
BcnI	CCSGG	2 cut(s)	327, 328
BfaI	CTAG	1 cut(s)	654
BfmI	CTRYAG	2 cut(s)	90, 225
BisI	GCNGC	5 cut(s)	59, 62, 65, 68, 337
BlsI	GCNGC	5 cut(s)	60, 63, 66, 69, 338
Bme1390I	CCNGG	2 cut(s)	327, 328
BmeT110I	CYCGRG	1 cut(s)	326
BmiI	GGNNCC	1 cut(s)	131
BmrFI	CCNGG	2 cut(s)	327, 328
Bpu10I	CCTNAGC	2 cut(s)	258, 450
BpuEI	CTTGAG	1 cut(s)	403
BpuMI	CCSGG	2 cut(s)	327, 328
BsaBI	GATNNNNATC	1 cut(s)	585
BsaJI	CCNNGG	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse1I	ACTGG	1 cut(s)	386
Bse8I	GATNNNNATC	1 cut(s)	585
BseDI	CCNNGG	1 cut(s)	326
BseGI	GGATG	2 cut(s)	181, 336
BseJI	GATNNNNATC	1 cut(s)	585
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMII	CTCAG	2 cut(s)	272, 441
BseNI	ACTGG	1 cut(s)	386
BseRI	GAGGAG	4 cut(s)	122, 467, 584, 629
BseXI	GCAGC	4 cut(s)	70, 73, 76, 79
BshFI	GGCC	1 cut(s)	597
BsiHKCI	CYCGRG	1 cut(s)	326
BsiSI	CCGG	1 cut(s)	327
BslI	CCNNNNNNNGG	1 cut(s)	85
BsnI	GGCC	1 cut(s)	597
BsoBI	CYCGRG	1 cut(s)	326
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	6 cut(s)	205, 303, 365, 573, 586, 618
BspACI	CCGC	1 cut(s)	336
BspANI	GGCC	1 cut(s)	597
BspCNI	CTCAG	2 cut(s)	271, 442
BspHI	TCATGA	2 cut(s)	208, 306
BspLI	GGNNCC	1 cut(s)	131
BspPI	GGATC	1 cut(s)	373
BsrBI	CCGCTC	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	386
BssECI	CCNNGG	1 cut(s)	326
BssMI	GATC	6 cut(s)	205, 303, 365, 573, 586, 618
Bst4CI	ACNGT	3 cut(s)	101, 320, 548
BstDEI	CTNAG	2 cut(s)	258, 450
BstF5I	GGATG	2 cut(s)	181, 336
BstKTI	GATC	6 cut(s)	208, 306, 368, 576, 589, 621
BstMBI	GATC	6 cut(s)	205, 303, 365, 573, 586, 618
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 67, 508
BstNSI	RCATGY	1 cut(s)	433
BstSCI	CCNGG	2 cut(s)	325, 326
BstSFI	CTRYAG	2 cut(s)	90, 225
BstV1I	GCAGC	4 cut(s)	70, 73, 76, 79
BstX2I	RGATCY	1 cut(s)	365
BstYI	RGATCY	1 cut(s)	365
BsuRI	GGCC	1 cut(s)	597
BtsCI	GGATG	2 cut(s)	181, 336
BtsIMutI	CAGTG	1 cut(s)	106
CciI	TCATGA	2 cut(s)	208, 306
Cfr9I	CCCGGG	1 cut(s)	326
CviAII	CATG	5 cut(s)	80, 209, 307, 397, 430
DdeI	CTNAG	2 cut(s)	258, 450
DpnI	GATC	6 cut(s)	207, 305, 367, 575, 588, 620
DpnII	GATC	6 cut(s)	205, 303, 365, 573, 586, 618
EaeI	YGGCCR	1 cut(s)	595
Eco24I	GRGCYC	1 cut(s)	287
Eco32I	GATATC	1 cut(s)	480
Eco57I	CTGAAG	2 cut(s)	458, 482
Eco88I	CYCGRG	1 cut(s)	326
EcoRV	GATATC	1 cut(s)	480
EcoT38I	GRGCYC	1 cut(s)	287
FaeI	CATG	5 cut(s)	83, 212, 310, 400, 433
FatI	CATG	5 cut(s)	79, 208, 306, 396, 429
FbaI	TGATCA	3 cut(s)	205, 303, 586
Fnu4HI	GCNGC	5 cut(s)	59, 62, 65, 68, 337
FokI	GGATG	2 cut(s)	188, 343
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	5 cut(s)	59, 62, 65, 68, 337
FspBI	CTAG	1 cut(s)	654
GluI	GCNGC	5 cut(s)	59, 62, 65, 68, 337
HaeIII	GGCC	1 cut(s)	597
HapII	CCGG	1 cut(s)	327
Hin1II	CATG	5 cut(s)	83, 212, 310, 400, 433
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	3 cut(s)	35, 167, 230
HpaII	CCGG	1 cut(s)	327
HphI	GGTGA	1 cut(s)	590
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	7 cut(s)	25, 274, 303, 406, 477, 484, 697
Hpy188III	TCNNGA	4 cut(s)	209, 307, 420, 590
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	3 cut(s)	437, 540, 667
HpyCH4III	ACNGT	3 cut(s)	101, 320, 548
HpyCH4V	TGCA	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 67, 508
HpyF3I	CTNAG	2 cut(s)	258, 450
Hsp92II	CATG	5 cut(s)	83, 212, 310, 400, 433
Ksp22I	TGATCA	3 cut(s)	205, 303, 586
Kzo9I	GATC	6 cut(s)	205, 303, 365, 573, 586, 618
LmnI	GCTCC	1 cut(s)	135
LpnPI	CCDG	6 cut(s)	97, 156, 179, 340, 399, 550
Lsp1109I	GCAGC	4 cut(s)	70, 73, 76, 79
MaeI	CTAG	1 cut(s)	654
MaeIII	GTNAC	2 cut(s)	154, 679
MalI	GATC	6 cut(s)	207, 305, 367, 575, 588, 620
MbiI	CCGCTC	1 cut(s)	336
MboI	GATC	6 cut(s)	205, 303, 365, 573, 586, 618
MboII	GAAGA	6 cut(s)	135, 228, 360, 452, 502, 525
MflI	RGATCY	1 cut(s)	365
MhlI	GDGCHC	1 cut(s)	287
MlsI	TGGCCA	1 cut(s)	597
MluCI	AATT	1 cut(s)	423
MluNI	TGGCCA	1 cut(s)	597
MlyI	GAGTC	2 cut(s)	29, 161
MnlI	CCTC	9 cut(s)	120, 143, 267, 274, 427, 445, 562, 607, 663
Mox20I	TGGCCA	1 cut(s)	597
MscI	TGGCCA	1 cut(s)	597
MseI	TTAA	4 cut(s)	186, 426, 464, 513
MslI	CAYNNNNRTG	1 cut(s)	78
Msp20I	TGGCCA	1 cut(s)	597
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	2 cut(s)	327, 328
MwoI	GCNNNNNNNGC	3 cut(s)	64, 67, 508
NciI	CCSGG	2 cut(s)	327, 328
NdeII	GATC	6 cut(s)	205, 303, 365, 573, 586, 618
NlaIII	CATG	5 cut(s)	83, 212, 310, 400, 433
NlaIV	GGNNCC	1 cut(s)	131
NmuCI	GTSAC	1 cut(s)	154
NspI	RCATGY	1 cut(s)	433
PagI	TCATGA	2 cut(s)	208, 306
PciI	ACATGT	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	230
PflMI	CCANNNNNTGG	1 cut(s)	85
PkrI	GCNGC	5 cut(s)	60, 63, 66, 69, 338
PleI	GAGTC	2 cut(s)	29, 161
PpsI	GAGTC	2 cut(s)	29, 161
PscI	ACATGT	1 cut(s)	429
PspN4I	GGNNCC	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	365
RseI	CAYNNNNRTG	1 cut(s)	78
SaqAI	TTAA	4 cut(s)	186, 426, 464, 513
SatI	GCNGC	5 cut(s)	59, 62, 65, 68, 337
Sau3AI	GATC	6 cut(s)	205, 303, 365, 573, 586, 618
SchI	GAGTC	2 cut(s)	29, 161
ScrFI	CCNGG	2 cut(s)	327, 328
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	8 cut(s)	9, 120, 142, 184, 226, 498, 532, 721
SfcI	CTRYAG	2 cut(s)	90, 225
SmaI	CCCGGG	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	418
SmoI	CTYRAG	1 cut(s)	418
Sse9I	AATT	1 cut(s)	423
SsiI	CCGC	1 cut(s)	336
SspMI	CTAG	1 cut(s)	654
StyD4I	CCNGG	2 cut(s)	325, 326
TaaI	ACNGT	3 cut(s)	101, 320, 548
TasI	AATT	1 cut(s)	423
TauI	GCSGC	1 cut(s)	339
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	4 cut(s)	186, 426, 464, 513
Tru9I	TTAA	4 cut(s)	186, 426, 464, 513
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	4 cut(s)	58, 61, 64, 67
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	6 cut(s)	26, 135, 192, 222, 653, 728
TspMI	CCCGGG	1 cut(s)	326
TspRI	CASTG	1 cut(s)	106
Van91I	CCANNNNNTGG	1 cut(s)	85
XceI	RCATGY	1 cut(s)	433
XmaI	CCCGGG	1 cut(s)	326
XspI	CTAG	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.