Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005174

Physical Location & Seq

Genomic Coordinates Forward (+)

21727609 .. 21729714

Gene Structure 2106 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30743

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCTGCAGGGACCAATCAATTTTATCATCACAGCTTACTGTATGCCAGGGATGAGAGGTTATGATTTGCTGAAACGGATCAAGGGTAAATTCCTCCTATGGTACCTGAGGTATTGCTACTTGGACAGTTTGATACCTGATGTATTAAAGGGGACAGTTTGGTGCTTGGAGGAAGGGGCTGAGGCGTTTCTTTTGAAGCCACCAAAGTTATCAGATTTGAGAAAGCTAATTCAGCCTTACCTGATCAAATCACTCCACCATTCTGGTAACAACAACACTGACAGTTGCTGGGAGGCTGCTGATATCAATGACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

105

Amino Acids

12.11

Weight (kDa)

7.65

Isoelectric Point (pI)

30.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005174)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27180
malus_domestica	MD08G1161200.v1.1 MD15G1346400.v1.1
prunus_persica	Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1
pyrus_communis	pycom08g13860 pycom15g31040
rosa_chinensis	RchiOBHm_Chr5g0027891 RchiOBHm_Chr6g0296091
rosa_laevigata	RLG00000011733 RLG00000033051
rosa_multiflora	Rmu_sc0003139.1_g000038
rosa_roxburghii	Rroxscaffold_1G00051740 Rroxscaffold_7G00178190
rosa_rugosa	Rorug06G0257700
rosa_samantha	Rh5AG196600 Rh5BG194500 Rh5CG214400 Rh5DG196200 Rh6AG370500 Rh6BG377900 Rh6CG383500 Rh6DG370400
rosa_wichuraiana	Rw5G017890 Rw6G032290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	102
AccB1I	GGYRCC	1 cut(s)	102
AclWI	GGATC	1 cut(s)	86
AcsI	RAATTY	1 cut(s)	89
AfaI	GTAC	1 cut(s)	104
AgsI	TTSAA	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	2 cut(s)	35, 226
AluI	AGCT	2 cut(s)	35, 226
AlwI	GGATC	1 cut(s)	86
AlwNI	CAGNNNCTG	1 cut(s)	288
ApeKI	GCWGC	2 cut(s)	4, 296
ApoI	RAATTY	1 cut(s)	89
Asp718I	GGTACC	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	11
AxyI	CCTNAGG	1 cut(s)	107
BanI	GGYRCC	1 cut(s)	102
BbvCI	CCTCAGC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	283
BciT130I	CCWGG	1 cut(s)	48
BclI	TGATCA	1 cut(s)	243
BfmI	CTRYAG	1 cut(s)	5
BisI	GCNGC	2 cut(s)	5, 297
BlsI	GCNGC	2 cut(s)	6, 298
Bme1390I	CCNGG	1 cut(s)	48
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	2 cut(s)	12, 104
BmrFI	CCNGG	1 cut(s)	48
Bpu10I	CCTNAGC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	47
Bse1I	ACTGG	1 cut(s)	313
Bse21I	CCTNAGG	1 cut(s)	107
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	57
BseMII	CTCAG	2 cut(s)	98, 171
BseNI	ACTGG	1 cut(s)	313
BseXI	GCAGC	1 cut(s)	283
BseYI	CCCAGC	1 cut(s)	288
BshNI	GGYRCC	1 cut(s)	102
BslFI	GGGAC	2 cut(s)	24, 166
BsmFI	GGGAC	2 cut(s)	24, 166
Bsp143I	GATC	2 cut(s)	78, 243
BspCNI	CTCAG	2 cut(s)	99, 172
BspLI	GGNNCC	2 cut(s)	12, 104
BspMAI	CTGCAG	1 cut(s)	9
BspPI	GGATC	1 cut(s)	86
BspT107I	GGYRCC	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	313
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	2 cut(s)	78, 243
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	4 cut(s)	41, 128, 157, 284
BstDEI	CTNAG	2 cut(s)	107, 180
BstF5I	GGATG	1 cut(s)	57
BstKTI	GATC	2 cut(s)	81, 246
BstMBI	GATC	2 cut(s)	78, 243
BstMWI	GCNNNNNNNGC	1 cut(s)	232
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	46
BstSFI	CTRYAG	1 cut(s)	5
BstV1I	GCAGC	1 cut(s)	283
BstXI	CCANNNNNNTGG	1 cut(s)	263
Bsu36I	CCTNAGG	1 cut(s)	107
BtsCI	GGATG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	276
CaiI	CAGNNNCTG	1 cut(s)	288
Cfr13I	GGNCC	1 cut(s)	11
Csp6I	GTAC	1 cut(s)	103
CviJI	RGCY	6 cut(s)	35, 179, 199, 226, 235, 296
CviKI_1	RGCY	6 cut(s)	35, 179, 199, 226, 235, 296
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	2 cut(s)	107, 180
DpnI	GATC	2 cut(s)	80, 245
DpnII	GATC	2 cut(s)	78, 243
Eco32I	GATATC	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	11
Eco81I	CCTNAGG	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	46
EcoRV	GATATC	1 cut(s)	304
FaiI	YATR	3 cut(s)	44, 63, 100
FaqI	GGGAC	2 cut(s)	24, 166
FbaI	TGATCA	1 cut(s)	243
Fnu4HI	GCNGC	2 cut(s)	5, 297
FokI	GGATG	1 cut(s)	64
Fsp4HI	GCNGC	2 cut(s)	5, 297
GluI	GCNGC	2 cut(s)	5, 297
GsaI	CCCAGC	1 cut(s)	292
Hpy188I	TCNGA	1 cut(s)	214
HpyAV	CCTTC	1 cut(s)	167
HpyCH4III	ACNGT	4 cut(s)	41, 128, 157, 284
HpyCH4V	TGCA	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	1 cut(s)	232
HpyF3I	CTNAG	2 cut(s)	107, 180
KpnI	GGTACC	1 cut(s)	106
Ksp22I	TGATCA	1 cut(s)	243
Kzo9I	GATC	2 cut(s)	78, 243
LpnPI	CCDG	7 cut(s)	33, 60, 119, 150, 249, 254, 274
Lsp1109I	GCAGC	1 cut(s)	283
MaeIII	GTNAC	1 cut(s)	266
MalI	GATC	2 cut(s)	80, 245
MboI	GATC	2 cut(s)	78, 243
MluCI	AATT	3 cut(s)	19, 89, 228
MnlI	CCTC	6 cut(s)	50, 102, 104, 163, 175, 286
MseI	TTAA	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	232
NdeII	GATC	2 cut(s)	78, 243
NlaIV	GGNNCC	2 cut(s)	12, 104
PkrI	GCNGC	2 cut(s)	6, 298
Psp6I	CCWGG	1 cut(s)	46
PspFI	CCCAGC	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	12, 104
PspPI	GGNCC	1 cut(s)	11
PstI	CTGCAG	1 cut(s)	9
PstNI	CAGNNNCTG	1 cut(s)	288
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	2 cut(s)	5, 297
Sau3AI	GATC	2 cut(s)	78, 243
Sau96I	GGNCC	1 cut(s)	11
ScrFI	CCNGG	1 cut(s)	48
SetI	ASST	7 cut(s)	37, 61, 108, 113, 139, 228, 243
SfcI	CTRYAG	1 cut(s)	5
SinI	GGWCC	1 cut(s)	11
Sse9I	AATT	3 cut(s)	19, 89, 228
StyD4I	CCNGG	1 cut(s)	46
TaaI	ACNGT	4 cut(s)	41, 128, 157, 284
TasI	AATT	3 cut(s)	19, 89, 228
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TscAI	CASTG	1 cut(s)	283
TseI	GCWGC	2 cut(s)	4, 296
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	1 cut(s)	283
VpaK11BI	GGWCC	1 cut(s)	11
XapI	RAATTY	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.