Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0005174

Physical Location & Seq

Genomic Coordinates Reverse (-)

18733259 .. 18736374

Gene Structure 3116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1161200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTCATCAGTTAGTCTGAAAATGGAGGTGGTGGTGAAGTCAGATGTTGCAGACCCCAAACAACAACAGCAGCTGCTGCAGAACCAACATTTCCATGTATTGGCTGTAGATGACAGCCTTTTGGACAGGAAACTCCTGGAGAGGCTCCTTAGAGGTTCTTCATATGAAGTGACTTGTGTGGATTCTGGGGATGAAGCACTAAAATATCTGGGTTTGCTTGAAGACCTAAACCGAAGTACTGCAACTTCCTCTTCATCCAGCTCCCCTCAGTCATCAGATGTACCAGAGGGATCAAAAGCCATCAACTTGATCATGACGGACTTCTGTATGCCCGGAATGAGCGGCTATGATTTGCTGAAACGCGTCAAGGGATCTTCTTGGAAGGACGTACCAGTCGTGGTCATGTCATCAGAGAATGTTCCTTCAAGAATCAGCATGTGCTTGGAAGAAGGGGCAGAGGAGTTTCTGTTGAAGCCACTCCAGTTGTCAGATCTGAAGAAGCTTCGGCCTTACCTGCTCAAATCCCTCCAACATTATTATTCTTCTAACCACAATGAGGCTGGTGGTGAAAATGACCAAAACGACCAAACCAAAAGCGCTACTGAGATGAATCATGTGAAGGGCACTACCGTCAACAGCAATAGTATTAGCAAGAGGAAGGCCCAAACAATATCAGAGAGATCAAGGCCCAAGATGAAGGGATTAGGTGTTCTAGGCCCAAACAATATAAGAGAGATCAAGGCCCAAGATGAAGGGACTAGGTGTTCTAGGCCCAAACAGTATCAGAGAGATCAAGGCCCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

269

Amino Acids

29.79

Weight (kDa)

8.25

Isoelectric Point (pI)

59.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	33 - 167	1.7e-15	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005174)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27180
malus_domestica	MD08G1161200.v1.1 MD15G1346400.v1.1
prunus_persica	Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1
pyrus_communis	pycom08g13860 pycom15g31040
rosa_chinensis	RchiOBHm_Chr5g0027891 RchiOBHm_Chr6g0296091
rosa_laevigata	RLG00000011733 RLG00000033051
rosa_multiflora	Rmu_sc0003139.1_g000038
rosa_roxburghii	Rroxscaffold_1G00051740 Rroxscaffold_7G00178190
rosa_rugosa	Rorug06G0257700
rosa_samantha	Rh5AG196600 Rh5BG194500 Rh5CG214400 Rh5DG196200 Rh6AG370500 Rh6BG377900 Rh6CG383500 Rh6DG370400
rosa_wichuraiana	Rw5G017890 Rw6G032290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	392
Acc36I	ACCTGC	1 cut(s)	522
AccB7I	CCANNNNNTGG	1 cut(s)	100
AccBSI	CCGCTC	1 cut(s)	342
AccII	CGCG	1 cut(s)	363
AciI	CCGC	1 cut(s)	342
AclWI	GGATC	2 cut(s)	298, 379
AcuI	CTGAAG	1 cut(s)	515
AfaI	GTAC	3 cut(s)	238, 282, 390
AfeI	AGCGCT	1 cut(s)	598
AfiI	CCNNNNNNNGG	2 cut(s)	100, 556
AflIII	ACRYGT	1 cut(s)	361
AgsI	TTSAA	3 cut(s)	221, 426, 472
AjnI	CCWGG	1 cut(s)	135
AloI	GAACNNNNNNTCC	4 cut(s)	693, 725, 748, 780
AluBI	AGCT	3 cut(s)	73, 261, 502
AluI	AGCT	3 cut(s)	73, 261, 502
AlwI	GGATC	2 cut(s)	298, 379
AlwNI	CAGNNNCTG	2 cut(s)	73, 76
Aor51HI	AGCGCT	1 cut(s)	598
AoxI	GGCC	7 cut(s)	506, 660, 686, 715, 741, 770, 796
ApeKI	GCWGC	3 cut(s)	70, 73, 76
AspLEI	GCGC	1 cut(s)	599
AspS9I	GGNCC	6 cut(s)	661, 687, 716, 742, 771, 797
AsuC2I	CCSGG	1 cut(s)	333
AsuHPI	GGTGA	2 cut(s)	46, 578
BaeGI	GKGCMC	1 cut(s)	626
BarI	GAAGNNNNNNTAC	2 cut(s)	229, 261
BbsI	GAAGAC	1 cut(s)	228
BbvI	GCAGC	3 cut(s)	60, 63, 82
BccI	CCATC	1 cut(s)	308
BciT130I	CCWGG	1 cut(s)	137
BclI	TGATCA	1 cut(s)	309
BcnI	CCSGG	1 cut(s)	333
BfaI	CTAG	3 cut(s)	713, 759, 768
BfmI	CTRYAG	2 cut(s)	77, 105
BfoI	RGCGCY	1 cut(s)	600
BfuAI	ACCTGC	1 cut(s)	522
BglII	AGATCT	1 cut(s)	490
BisI	GCNGC	4 cut(s)	71, 74, 77, 343
BlsI	GCNGC	4 cut(s)	72, 75, 78, 344
BmcAI	AGTACT	1 cut(s)	238
Bme1390I	CCNGG	2 cut(s)	137, 333
BmgT120I	GGNCC	6 cut(s)	661, 687, 716, 742, 771, 797
BmiI	GGNNCC	1 cut(s)	146
BmrFI	CCNGG	2 cut(s)	137, 333
BpiI	GAAGAC	1 cut(s)	228
BpmI	CTGGAG	2 cut(s)	158, 464
BpuMI	CCSGG	1 cut(s)	333
BsaXI	ACNNNNNCTCC	2 cut(s)	452, 482
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 556
Bse1I	ACTGG	2 cut(s)	392, 481
BseBI	CCWGG	1 cut(s)	137
BseGI	GGATG	2 cut(s)	196, 254
BseLI	CCNNNNNNNGG	2 cut(s)	100, 556
BseMII	CTCAG	2 cut(s)	281, 594
BseNI	ACTGG	2 cut(s)	392, 481
BseRI	GAGGAG	1 cut(s)	473
BseSI	GKGCMC	1 cut(s)	626
BseXI	GCAGC	3 cut(s)	60, 63, 82
Bsh1236I	CGCG	1 cut(s)	363
BshFI	GGCC	7 cut(s)	508, 662, 688, 717, 743, 772, 798
BsiSI	CCGG	1 cut(s)	333
BslFI	GGGAC	1 cut(s)	769
BslI	CCNNNNNNNGG	2 cut(s)	100, 556
BsmFI	GGGAC	1 cut(s)	769
BsnI	GGCC	7 cut(s)	508, 662, 688, 717, 743, 772, 798
Bsp1286I	GDGCHC	1 cut(s)	626
Bsp143I	GATC	7 cut(s)	290, 309, 371, 490, 680, 735, 790
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	7 cut(s)	508, 662, 688, 717, 743, 772, 798
BspCNI	CTCAG	2 cut(s)	280, 595
BspFNI	CGCG	1 cut(s)	363
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	1 cut(s)	146
BspMAI	CTGCAG	1 cut(s)	81
BspMI	ACCTGC	1 cut(s)	522
BspPI	GGATC	2 cut(s)	298, 379
BsrBI	CCGCTC	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	392, 481
BssMI	GATC	7 cut(s)	290, 309, 371, 490, 680, 735, 790
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	2 cut(s)	631, 780
Bst6I	CTCTTC	1 cut(s)	256
BstAPI	GCANNNNNTGC	1 cut(s)	76
BstDEI	CTNAG	3 cut(s)	149, 267, 603
BstF5I	GGATG	2 cut(s)	196, 254
BstFNI	CGCG	1 cut(s)	363
BstH2I	RGCGCY	1 cut(s)	600
BstHHI	GCGC	1 cut(s)	599
BstKTI	GATC	7 cut(s)	293, 312, 374, 493, 683, 738, 793
BstMBI	GATC	7 cut(s)	290, 309, 371, 490, 680, 735, 790
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 514
BstNI	CCWGG	1 cut(s)	137
BstNSI	RCATGY	1 cut(s)	439
BstSCI	CCNGG	2 cut(s)	135, 331
BstSFI	CTRYAG	2 cut(s)	77, 105
BstSLI	GKGCMC	1 cut(s)	626
BstUI	CGCG	1 cut(s)	363
BstV1I	GCAGC	3 cut(s)	60, 63, 82
BstV2I	GAAGAC	1 cut(s)	228
BstX2I	RGATCY	2 cut(s)	371, 490
BstYI	RGATCY	2 cut(s)	371, 490
BsuRI	GGCC	7 cut(s)	508, 662, 688, 717, 743, 772, 798
BtsCI	GGATG	2 cut(s)	196, 254
BveI	ACCTGC	1 cut(s)	522
CaiI	CAGNNNCTG	2 cut(s)	73, 76
CciI	TCATGA	1 cut(s)	312
CfoI	GCGC	1 cut(s)	599
Cfr13I	GGNCC	6 cut(s)	661, 687, 716, 742, 771, 797
CseI	GACGC	1 cut(s)	352
Csp6I	GTAC	3 cut(s)	237, 281, 389
CspCI	CAANNNNNGTGG	2 cut(s)	465, 500
CviAII	CATG	5 cut(s)	95, 313, 403, 436, 614
CviQI	GTAC	3 cut(s)	237, 281, 389
DdeI	CTNAG	3 cut(s)	149, 267, 603
DpnI	GATC	7 cut(s)	292, 311, 373, 492, 682, 737, 792
DpnII	GATC	7 cut(s)	290, 309, 371, 490, 680, 735, 790
DrdI	GACNNNNNNGTC	1 cut(s)	392
DseDI	GACNNNNNNGTC	1 cut(s)	392
Eam1104I	CTCTTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	256
Eco47III	AGCGCT	1 cut(s)	598
Eco57I	CTGAAG	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	135
FaeI	CATG	5 cut(s)	98, 316, 406, 439, 617
FaqI	GGGAC	1 cut(s)	769
FatI	CATG	5 cut(s)	94, 312, 402, 435, 613
FauNDI	CATATG	1 cut(s)	163
FbaI	TGATCA	1 cut(s)	309
Fnu4HI	GCNGC	4 cut(s)	71, 74, 77, 343
FokI	GGATG	2 cut(s)	203, 241
Fsp4HI	GCNGC	4 cut(s)	71, 74, 77, 343
FspBI	CTAG	3 cut(s)	713, 759, 768
GlaI	GCGC	1 cut(s)	598
GluI	GCNGC	4 cut(s)	71, 74, 77, 343
GsuI	CTGGAG	2 cut(s)	158, 464
HaeII	RGCGCY	1 cut(s)	600
HaeIII	GGCC	7 cut(s)	508, 662, 688, 717, 743, 772, 798
HapII	CCGG	1 cut(s)	333
HgaI	GACGC	1 cut(s)	352
HhaI	GCGC	1 cut(s)	599
Hin1II	CATG	5 cut(s)	98, 316, 406, 439, 617
Hin6I	GCGC	1 cut(s)	597
HinP1I	GCGC	1 cut(s)	597
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	3 cut(s)	182, 429, 610
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	2 cut(s)	46, 578
Hpy166II	GTNNAC	1 cut(s)	634
Hpy188I	TCNGA	8 cut(s)	18, 43, 277, 412, 490, 495, 676, 786
Hpy188III	TCNNGA	2 cut(s)	313, 426
Hpy8I	GTNNAC	1 cut(s)	634
HpyAV	CCTTC	7 cut(s)	376, 432, 443, 613, 652, 691, 746
HpyCH4III	ACNGT	2 cut(s)	631, 780
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	3 cut(s)	50, 79, 242
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 514
HpyF3I	CTNAG	3 cut(s)	149, 267, 603
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	5 cut(s)	98, 316, 406, 439, 617
HspAI	GCGC	1 cut(s)	597
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	7 cut(s)	290, 309, 371, 490, 680, 735, 790
LmnI	GCTCC	2 cut(s)	150, 266
Lsp1109I	GCAGC	3 cut(s)	60, 63, 82
MaeI	CTAG	3 cut(s)	713, 759, 768
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	7 cut(s)	292, 311, 373, 492, 682, 737, 792
MbiI	CCGCTC	1 cut(s)	342
MboI	GATC	7 cut(s)	290, 309, 371, 490, 680, 735, 790
MboII	GAAGA	7 cut(s)	150, 233, 243, 366, 458, 508, 534
MflI	RGATCY	2 cut(s)	371, 490
MhlI	GDGCHC	1 cut(s)	626
MluI	ACGCGT	1 cut(s)	361
MmeI	TCCRAC	1 cut(s)	553
MslI	CAYNNNNRTG	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	73
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	2 cut(s)	137, 333
MvaI	CCWGG	1 cut(s)	137
MvnI	CGCG	1 cut(s)	363
MwoI	GCNNNNNNNGC	2 cut(s)	76, 514
NciI	CCSGG	1 cut(s)	333
NdeI	CATATG	1 cut(s)	163
NdeII	GATC	7 cut(s)	290, 309, 371, 490, 680, 735, 790
NlaIII	CATG	5 cut(s)	98, 316, 406, 439, 617
NlaIV	GGNNCC	1 cut(s)	146
NmuCI	GTSAC	1 cut(s)	169
NspI	RCATGY	1 cut(s)	439
PagI	TCATGA	1 cut(s)	312
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PfeI	GAWTC	3 cut(s)	182, 429, 610
PflMI	CCANNNNNTGG	1 cut(s)	100
PfoI	TCCNGGA	1 cut(s)	135
PkrI	GCNGC	4 cut(s)	72, 75, 78, 344
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	146
PspPI	GGNCC	6 cut(s)	661, 687, 716, 742, 771, 797
PstI	CTGCAG	1 cut(s)	81
PstNI	CAGNNNCTG	2 cut(s)	73, 76
PsuI	RGATCY	2 cut(s)	371, 490
PvuII	CAGCTG	1 cut(s)	73
RsaI	GTAC	3 cut(s)	238, 282, 390
RsaNI	GTAC	3 cut(s)	237, 281, 389
RseI	CAYNNNNRTG	1 cut(s)	93
SatI	GCNGC	4 cut(s)	71, 74, 77, 343
Sau3AI	GATC	7 cut(s)	290, 309, 371, 490, 680, 735, 790
Sau96I	GGNCC	6 cut(s)	661, 687, 716, 742, 771, 797
ScaI	AGTACT	1 cut(s)	238
ScrFI	CCNGG	2 cut(s)	137, 333
SduI	GDGCHC	1 cut(s)	626
SfcI	CTRYAG	2 cut(s)	77, 105
SmiMI	CAYNNNNRTG	1 cut(s)	93
SsiI	CCGC	1 cut(s)	342
SspMI	CTAG	3 cut(s)	713, 759, 768
StyD4I	CCNGG	2 cut(s)	135, 331
TaaI	ACNGT	2 cut(s)	631, 780
TaiI	ACGT	1 cut(s)	390
TatI	WGTACW	1 cut(s)	236
TauI	GCSGC	1 cut(s)	345
TfiI	GAWTC	3 cut(s)	182, 429, 610
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	3 cut(s)	70, 73, 76
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	7 cut(s)	150, 180, 207, 243, 623, 710, 765
TspGWI	ACGGA	1 cut(s)	332
Van91I	CCANNNNNTGG	1 cut(s)	100
XceI	RCATGY	1 cut(s)	439
XcmI	CCANNNNNNNNNTGG	1 cut(s)	557
XspI	CTAG	3 cut(s)	713, 759, 768
ZrmI	AGTACT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.