Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005174

Physical Location & Seq

Genomic Coordinates Reverse (-)

29202985 .. 29205262

Gene Structure 2278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g31040.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGAGGTGGTAGTGAAGTCAGATGTTGCAGACTTCAAACAACAGCAGCAGCAGCCACAACAACATTTCCATGTATTGGCAGTGGATGATAGCATTTTGGACAGGAAGCTCTTGGAGAGGCTCCTCAGAGGCTCTTCTTATGAAGTGACTTGTGTGGACTCTGGGGATGAAGCACTAAAATATCTGGGTTTGCATGATGACCTAAACCAAAGTAGTACAATTTCCTCCTCATCCACTTCCCCTCAGTCATCAGATGTACTGGAGGGAGCAAAAGTCATCAATTTGATCATGACAGACTTCTGTATGCCCGGAATGAGCGGCTATGATTTGCTGAAACGCGTCAAGGGATCTTCTTGGAAAGATGTACCAGTGGTGGTCATGTCATCAGAGAATGTTCCTTCTAGAATCAACATGTGCTTGGCAGAAGGGGCAGAGGAGTTTCTGTTGAAGCCACTCCAGTTTTCAGATTTGAAGAAGCTTCAGCCTTACCTGCTCAAATCCCTCCGTCACTATTCTTCAATCGACAGCATTGACAACGGCGACGACGACAATGCCTCGGTGAAGGAGGAGGTTGGTGGTGGTGAGAATGACCAAACTGACCAAACCAAAAGCACTACTGAGACTAATCATGCCAGGGGTAATACCGTCAACAACAATATTGTTGGTATTAGCAAGAGGAAGGCCCAAACAATACCAGAGAGATCAAGGCCCACGATGAAGGGATTAGCTGTTCTAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

247

Amino Acids

27.12

Weight (kDa)

5.18

Isoelectric Point (pI)

51.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005174)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27180
malus_domestica	MD08G1161200.v1.1 MD15G1346400.v1.1
prunus_persica	Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1
pyrus_communis	pycom08g13860 pycom15g31040
rosa_chinensis	RchiOBHm_Chr5g0027891 RchiOBHm_Chr6g0296091
rosa_laevigata	RLG00000011733 RLG00000033051
rosa_multiflora	Rmu_sc0003139.1_g000038
rosa_roxburghii	Rroxscaffold_1G00051740 Rroxscaffold_7G00178190
rosa_rugosa	Rorug06G0257700
rosa_samantha	Rh5AG196600 Rh5BG194500 Rh5CG214400 Rh5DG196200 Rh6AG370500 Rh6BG377900 Rh6CG383500 Rh6DG370400
rosa_wichuraiana	Rw5G017890 Rw6G032290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	498
AccB7I	CCANNNNNTGG	1 cut(s)	76
AccBSI	CCGCTC	1 cut(s)	318
AccII	CGCG	1 cut(s)	339
AciI	CCGC	1 cut(s)	318
AclWI	GGATC	1 cut(s)	355
AcuI	CTGAAG	1 cut(s)	464
AfaI	GTAC	3 cut(s)	217, 258, 366
AfiI	CCNNNNNNNGG	1 cut(s)	76
AflIII	ACRYGT	2 cut(s)	337, 411
AgsI	TTSAA	4 cut(s)	37, 448, 472, 519
AjnI	CCWGG	1 cut(s)	632
AloI	GAACNNNNNNTCC	1 cut(s)	714
AluBI	AGCT	3 cut(s)	109, 478, 728
AluI	AGCT	3 cut(s)	109, 478, 728
Alw26I	GTCTC	1 cut(s)	614
AlwI	GGATC	1 cut(s)	355
AoxI	GGCC	2 cut(s)	681, 707
ApeKI	GCWGC	3 cut(s)	46, 49, 52
AspS9I	GGNCC	2 cut(s)	682, 708
AsuC2I	CCSGG	1 cut(s)	309
AsuHPI	GGTGA	2 cut(s)	571, 593
BbvI	GCAGC	3 cut(s)	58, 61, 64
BceAI	ACGGC	1 cut(s)	553
BcgI	CGANNNNNNTGC	2 cut(s)	533, 567
BciT130I	CCWGG	1 cut(s)	634
BclI	TGATCA	1 cut(s)	285
BcnI	CCSGG	1 cut(s)	309
BcoDI	GTCTC	1 cut(s)	614
BfaI	CTAG	2 cut(s)	402, 734
BfuAI	ACCTGC	1 cut(s)	498
BisI	GCNGC	4 cut(s)	47, 50, 53, 319
BlsI	GCNGC	4 cut(s)	48, 51, 54, 320
Bme1390I	CCNGG	2 cut(s)	309, 634
BmgT120I	GGNCC	2 cut(s)	682, 708
BmiI	GGNNCC	1 cut(s)	122
BmrFI	CCNGG	2 cut(s)	309, 634
BpmI	CTGGAG	2 cut(s)	281, 440
BpuMI	CCSGG	1 cut(s)	309
BsaJI	CCNNGG	2 cut(s)	555, 633
BsaXI	ACNNNNNCTCC	4 cut(s)	258, 288, 428, 458
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	3 cut(s)	264, 368, 457
BseBI	CCWGG	1 cut(s)	634
BseDI	CCNNGG	2 cut(s)	555, 633
BseGI	GGATG	3 cut(s)	91, 172, 230
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMII	CTCAG	3 cut(s)	139, 257, 609
BseNI	ACTGG	3 cut(s)	264, 368, 457
BseRI	GAGGAG	4 cut(s)	113, 217, 449, 581
BseXI	GCAGC	3 cut(s)	58, 61, 64
Bsh1236I	CGCG	1 cut(s)	339
BshFI	GGCC	2 cut(s)	683, 709
BsiSI	CCGG	1 cut(s)	309
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	614
BsnI	GGCC	2 cut(s)	683, 709
Bsp143I	GATC	3 cut(s)	285, 347, 701
BspACI	CCGC	1 cut(s)	318
BspANI	GGCC	2 cut(s)	683, 709
BspCNI	CTCAG	3 cut(s)	138, 256, 610
BspFNI	CGCG	1 cut(s)	339
BspHI	TCATGA	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	122
BspMI	ACCTGC	1 cut(s)	498
BspPI	GGATC	1 cut(s)	355
BspQI	GCTCTTC	1 cut(s)	139
BsrBI	CCGCTC	1 cut(s)	318
BsrI	ACTGG	3 cut(s)	264, 368, 457
BssECI	CCNNGG	2 cut(s)	555, 633
BssMI	GATC	3 cut(s)	285, 347, 701
Bst2UI	CCWGG	1 cut(s)	634
Bst4CI	ACNGT	1 cut(s)	646
Bst6I	CTCTTC	1 cut(s)	139
BstDEI	CTNAG	3 cut(s)	125, 243, 618
BstF5I	GGATG	3 cut(s)	91, 172, 230
BstFNI	CGCG	1 cut(s)	339
BstKTI	GATC	3 cut(s)	288, 350, 704
BstMAI	GTCTC	1 cut(s)	614
BstMBI	GATC	3 cut(s)	285, 347, 701
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 428, 490
BstNI	CCWGG	1 cut(s)	634
BstNSI	RCATGY	1 cut(s)	415
BstSCI	CCNGG	2 cut(s)	307, 632
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	3 cut(s)	58, 61, 64
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
BsuRI	GGCC	2 cut(s)	683, 709
BtsCI	GGATG	3 cut(s)	91, 172, 230
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	87, 375
BveI	ACCTGC	1 cut(s)	498
CciI	TCATGA	1 cut(s)	288
Cfr13I	GGNCC	2 cut(s)	682, 708
CseI	GACGC	1 cut(s)	328
Csp6I	GTAC	3 cut(s)	216, 257, 365
CviAII	CATG	6 cut(s)	71, 194, 289, 379, 412, 629
CviQI	GTAC	3 cut(s)	216, 257, 365
DdeI	CTNAG	3 cut(s)	125, 243, 618
DpnI	GATC	3 cut(s)	287, 349, 703
DpnII	GATC	3 cut(s)	285, 347, 701
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	464
EcoRII	CCWGG	1 cut(s)	632
FaeI	CATG	6 cut(s)	74, 197, 292, 382, 415, 632
FatI	CATG	6 cut(s)	70, 193, 288, 378, 411, 628
FbaI	TGATCA	1 cut(s)	285
Fnu4HI	GCNGC	4 cut(s)	47, 50, 53, 319
FokI	GGATG	3 cut(s)	98, 179, 217
Fsp4HI	GCNGC	4 cut(s)	47, 50, 53, 319
FspBI	CTAG	2 cut(s)	402, 734
GluI	GCNGC	4 cut(s)	47, 50, 53, 319
GsuI	CTGGAG	2 cut(s)	281, 440
HaeIII	GGCC	2 cut(s)	683, 709
HapII	CCGG	1 cut(s)	309
HgaI	GACGC	1 cut(s)	328
Hin1II	CATG	6 cut(s)	74, 197, 292, 382, 415, 632
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HindIII	AAGCTT	1 cut(s)	476
HinfI	GANTC	2 cut(s)	158, 405
HpaII	CCGG	1 cut(s)	309
HphI	GGTGA	2 cut(s)	571, 593
Hpy166II	GTNNAC	2 cut(s)	157, 649
Hpy188I	TCNGA	5 cut(s)	22, 128, 253, 388, 466
Hpy188III	TCNNGA	2 cut(s)	289, 402
Hpy8I	GTNNAC	2 cut(s)	157, 649
Hpy99I	CGWCG	2 cut(s)	545, 548
HpyAV	CCTTC	5 cut(s)	408, 419, 556, 673, 712
HpyCH4III	ACNGT	1 cut(s)	646
HpyCH4V	TGCA	2 cut(s)	29, 193
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 428, 490
HpyF3I	CTNAG	3 cut(s)	125, 243, 618
Hsp92II	CATG	6 cut(s)	74, 197, 292, 382, 415, 632
Ksp22I	TGATCA	1 cut(s)	285
Kzo9I	GATC	3 cut(s)	285, 347, 701
LguI	GCTCTTC	1 cut(s)	139
LmnI	GCTCC	2 cut(s)	126, 266
Lsp1109I	GCAGC	3 cut(s)	58, 61, 64
MaeI	CTAG	2 cut(s)	402, 734
MaeIII	GTNAC	2 cut(s)	145, 506
MalI	GATC	3 cut(s)	287, 349, 703
MbiI	CCGCTC	1 cut(s)	318
MboI	GATC	3 cut(s)	285, 347, 701
MboII	GAAGA	4 cut(s)	126, 342, 484, 507
MflI	RGATCY	1 cut(s)	347
MluCI	AATT	2 cut(s)	219, 280
MluI	ACGCGT	1 cut(s)	337
MlyI	GAGTC	1 cut(s)	152
MslI	CAYNNNNRTG	1 cut(s)	69
MspI	CCGG	1 cut(s)	309
MspR9I	CCNGG	2 cut(s)	309, 634
MvaI	CCWGG	1 cut(s)	634
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	3 cut(s)	52, 428, 490
NciI	CCSGG	1 cut(s)	309
NdeII	GATC	3 cut(s)	285, 347, 701
NlaIII	CATG	6 cut(s)	74, 197, 292, 382, 415, 632
NlaIV	GGNNCC	1 cut(s)	122
NmuCI	GTSAC	2 cut(s)	145, 506
NspI	RCATGY	1 cut(s)	415
PagI	TCATGA	1 cut(s)	288
PciI	ACATGT	1 cut(s)	411
PciSI	GCTCTTC	1 cut(s)	139
PcsI	WCGNNNNNNNCGW	1 cut(s)	543
PfeI	GAWTC	1 cut(s)	405
PflMI	CCANNNNNTGG	1 cut(s)	76
PkrI	GCNGC	4 cut(s)	48, 51, 54, 320
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PscI	ACATGT	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	632
PspGI	CCWGG	1 cut(s)	632
PspN4I	GGNNCC	1 cut(s)	122
PspPI	GGNCC	2 cut(s)	682, 708
PsuI	RGATCY	1 cut(s)	347
RsaI	GTAC	3 cut(s)	217, 258, 366
RsaNI	GTAC	3 cut(s)	216, 257, 365
RseI	CAYNNNNRTG	1 cut(s)	69
SapI	GCTCTTC	1 cut(s)	139
SatI	GCNGC	4 cut(s)	47, 50, 53, 319
Sau3AI	GATC	3 cut(s)	285, 347, 701
Sau96I	GGNCC	2 cut(s)	682, 708
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	2 cut(s)	309, 634
SetI	ASST	7 cut(s)	9, 111, 204, 480, 492, 573, 730
SmiMI	CAYNNNNRTG	1 cut(s)	69
Sse9I	AATT	2 cut(s)	219, 280
SsiI	CCGC	1 cut(s)	318
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	2 cut(s)	402, 734
StyD4I	CCNGG	2 cut(s)	307, 632
TaaI	ACNGT	1 cut(s)	646
TaqI	TCGA	1 cut(s)	522
TasI	AATT	2 cut(s)	219, 280
TatI	WGTACW	2 cut(s)	215, 256
TauI	GCSGC	1 cut(s)	321
TfiI	GAWTC	1 cut(s)	405
TscAI	CASTG	2 cut(s)	87, 375
TseFI	GTSAC	2 cut(s)	145, 506
TseI	GCWGC	3 cut(s)	46, 49, 52
Tsp45I	GTSAC	2 cut(s)	145, 506
TspDTI	ATGAA	3 cut(s)	156, 183, 731
TspGWI	ACGGA	1 cut(s)	494
TspRI	CASTG	2 cut(s)	87, 375
Van91I	CCANNNNNTGG	1 cut(s)	76
XbaI	TCTAGA	1 cut(s)	401
XceI	RCATGY	1 cut(s)	415
XspI	CTAG	2 cut(s)	402, 734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.