Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005174

Physical Location & Seq

Genomic Coordinates Forward (+)

17934415 .. 17939262

Gene Structure 4848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00178190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGATGAAGACTGCTTATTGGGTTTTGGCTGTTTCCATAATCTTCAGCTTTTGCGCATCTGGGACTTCCTCGATTGAGAATTATCACCAAGCGTTTCCTATTGTGGAACCAGATCCTGGTCATACAAAACTTCGTCTTTCGAAGGAAGGCCTAGAGGCCATTGAAAGAATAACAACTCCGATTGCAGCTGTTGCAGGATCTTCTTGGAAAGATATACCAGTCGTAGTCATGTCATCAGAGAATGTTCCTTCAAGAATTAACATGTGCTTGGAAGAAGGGGCTGAGGAGTTTCTCTTAAAGCCACTTCAGATATCAGATTTGAAGAAGCTTCAGCCTTACTTGCTTAAAACCCTTGACCAACCTTCTTCTCGTGATAGCAGCATTGACAGTAGCAACAATCTCGTAGTTGAGGAGATCAGTGATGATGATCACGATGGCCAAACCAAAATCAATGAGGAGATCAATAAGGGTAGCGTGATGAATAATACTAATGCTAGTAGTATTAGCAAGAGGAAGGCAGTAACTACTGAAACATCGGAGAGAATACCCAAGATGAAAGGTTTAGTTGTAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

191

Amino Acids

20.98

Weight (kDa)

5.15

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005174)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27180
malus_domestica	MD08G1161200.v1.1 MD15G1346400.v1.1
prunus_persica	Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1
pyrus_communis	pycom08g13860 pycom15g31040
rosa_chinensis	RchiOBHm_Chr5g0027891 RchiOBHm_Chr6g0296091
rosa_laevigata	RLG00000011733 RLG00000033051
rosa_multiflora	Rmu_sc0003139.1_g000038
rosa_roxburghii	Rroxscaffold_1G00051740 Rroxscaffold_7G00178190
rosa_rugosa	Rorug06G0257700
rosa_samantha	Rh5AG196600 Rh5BG194500 Rh5CG214400 Rh5DG196200 Rh6AG370500 Rh6BG377900 Rh6CG383500 Rh6DG370400
rosa_wichuraiana	Rw5G017890 Rw6G032290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	55
AccB7I	CCANNNNNTGG	1 cut(s)	116
AclWI	GGATC	2 cut(s)	107, 205
AcoI	YGGCCR	1 cut(s)	436
AcuI	CTGAAG	3 cut(s)	28, 290, 314
AfiI	CCNNNNNNNGG	1 cut(s)	116
AflIII	ACRYGT	1 cut(s)	261
AgsI	TTSAA	3 cut(s)	164, 252, 322
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	3 cut(s)	48, 188, 328
AluI	AGCT	3 cut(s)	48, 188, 328
AlwI	GGATC	2 cut(s)	107, 205
AlwNI	CAGNNNCTG	1 cut(s)	116
AoxI	GGCC	3 cut(s)	148, 156, 436
ApeKI	GCWGC	2 cut(s)	185, 378
AspLEI	GCGC	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	77
AsuII	TTCGAA	1 cut(s)	140
BalI	TGGCCA	1 cut(s)	438
BauI	CACGAG	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	14
BbvCI	CCTCAGC	1 cut(s)	282
BbvI	GCAGC	2 cut(s)	197, 390
BccI	CCATC	1 cut(s)	428
BcgI	CGANNNNNNTGC	2 cut(s)	382, 416
BciT130I	CCWGG	1 cut(s)	117
BclI	TGATCA	1 cut(s)	427
BfaI	CTAG	2 cut(s)	152, 495
BisI	GCNGC	2 cut(s)	186, 379
BlsI	GCNGC	2 cut(s)	187, 380
Bme1390I	CCNGG	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	14
Bpu10I	CCTNAGC	1 cut(s)	282
Bpu14I	TTCGAA	1 cut(s)	140
BsaBI	GATNNNNATC	1 cut(s)	426
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse1I	ACTGG	1 cut(s)	218
Bse8I	GATNNNNATC	1 cut(s)	426
BseBI	CCWGG	1 cut(s)	117
BseJI	GATNNNNATC	1 cut(s)	426
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	218
BseRI	GAGGAG	3 cut(s)	299, 425, 470
BseXI	GCAGC	2 cut(s)	197, 390
BshFI	GGCC	3 cut(s)	150, 158, 438
BslFI	GGGAC	1 cut(s)	76
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	76
BsnI	GGCC	3 cut(s)	150, 158, 438
Bsp119I	TTCGAA	1 cut(s)	140
Bsp143I	GATC	5 cut(s)	112, 197, 414, 427, 459
BspANI	GGCC	3 cut(s)	150, 158, 438
BspCNI	CTCAG	1 cut(s)	274
BspLI	GGNNCC	1 cut(s)	108
BspPI	GGATC	2 cut(s)	107, 205
BspT104I	TTCGAA	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	218
BssMI	GATC	5 cut(s)	112, 197, 414, 427, 459
BssSI	CACGAG	1 cut(s)	369
Bst2BI	CACGAG	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	389
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstBI	TTCGAA	1 cut(s)	140
BstDEI	CTNAG	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	5 cut(s)	115, 200, 417, 430, 462
BstMBI	GATC	5 cut(s)	112, 197, 414, 427, 459
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 340
BstNI	CCWGG	1 cut(s)	117
BstNSI	RCATGY	1 cut(s)	265
BstSCI	CCNGG	1 cut(s)	115
BstV1I	GCAGC	2 cut(s)	197, 390
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	2 cut(s)	112, 197
BstYI	RGATCY	2 cut(s)	112, 197
BsuRI	GGCC	3 cut(s)	150, 158, 438
BtsIMutI	CAGTG	1 cut(s)	424
CaiI	CAGNNNCTG	1 cut(s)	116
CfoI	GCGC	1 cut(s)	56
CviAII	CATG	2 cut(s)	229, 262
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	5 cut(s)	114, 199, 416, 429, 461
DpnII	GATC	5 cut(s)	112, 197, 414, 427, 459
EaeI	YGGCCR	1 cut(s)	436
Eco147I	AGGCCT	1 cut(s)	150
Eco32I	GATATC	1 cut(s)	312
Eco57I	CTGAAG	3 cut(s)	28, 290, 314
EcoRII	CCWGG	1 cut(s)	115
EcoRV	GATATC	1 cut(s)	312
FaeI	CATG	2 cut(s)	232, 265
FaiI	YATR	6 cut(s)	38, 123, 215, 230, 263, 574
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	2 cut(s)	228, 261
FbaI	TGATCA	1 cut(s)	427
Fnu4HI	GCNGC	2 cut(s)	186, 379
Fsp4HI	GCNGC	2 cut(s)	186, 379
FspBI	CTAG	2 cut(s)	152, 495
FspI	TGCGCA	1 cut(s)	55
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	2 cut(s)	186, 379
HaeIII	GGCC	3 cut(s)	150, 158, 438
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	2 cut(s)	232, 265
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HindIII	AAGCTT	1 cut(s)	326
HphI	GGTGA	1 cut(s)	77
Hpy188I	TCNGA	5 cut(s)	180, 238, 309, 316, 538
Hpy188III	TCNNGA	3 cut(s)	252, 371, 431
HpyAV	CCTTC	6 cut(s)	136, 140, 258, 269, 372, 508
HpyCH4III	ACNGT	1 cut(s)	389
HpyCH4V	TGCA	2 cut(s)	185, 194
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 340
HpyF3I	CTNAG	1 cut(s)	282
Hsp92II	CATG	2 cut(s)	232, 265
HspAI	GCGC	1 cut(s)	54
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	5 cut(s)	112, 197, 414, 427, 459
LpnPI	CCDG	6 cut(s)	45, 102, 123, 129, 180, 231
Lsp1109I	GCAGC	2 cut(s)	197, 390
LweI	GCATC	1 cut(s)	65
MaeI	CTAG	2 cut(s)	152, 495
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	5 cut(s)	114, 199, 416, 429, 461
MboI	GATC	5 cut(s)	112, 197, 414, 427, 459
MboII	GAAGA	6 cut(s)	19, 34, 192, 284, 334, 357
MflI	RGATCY	2 cut(s)	112, 197
MlsI	TGGCCA	1 cut(s)	438
MluCI	AATT	2 cut(s)	79, 255
MluNI	TGGCCA	1 cut(s)	438
MnlI	CCTC	6 cut(s)	79, 148, 277, 403, 448, 504
Mox20I	TGGCCA	1 cut(s)	438
MscI	TGGCCA	1 cut(s)	438
MseI	TTAA	3 cut(s)	258, 296, 345
Msp20I	TGGCCA	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	2 cut(s)	191, 340
NdeII	GATC	5 cut(s)	112, 197, 414, 427, 459
NlaIII	CATG	2 cut(s)	232, 265
NlaIV	GGNNCC	1 cut(s)	108
NsbI	TGCGCA	1 cut(s)	55
NspI	RCATGY	1 cut(s)	265
NspV	TTCGAA	1 cut(s)	140
PceI	AGGCCT	1 cut(s)	150
PciI	ACATGT	1 cut(s)	261
PflMI	CCANNNNNTGG	1 cut(s)	116
PkrI	GCNGC	2 cut(s)	187, 380
PscI	ACATGT	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	108
PstNI	CAGNNNCTG	1 cut(s)	116
PsuI	RGATCY	2 cut(s)	112, 197
PvuII	CAGCTG	1 cut(s)	188
SaqAI	TTAA	3 cut(s)	258, 296, 345
SatI	GCNGC	2 cut(s)	186, 379
Sau3AI	GATC	5 cut(s)	112, 197, 414, 427, 459
ScrFI	CCNGG	1 cut(s)	117
SetI	ASST	5 cut(s)	50, 190, 330, 364, 562
SfaNI	GCATC	1 cut(s)	65
SfuI	TTCGAA	1 cut(s)	140
Sse9I	AATT	2 cut(s)	79, 255
SseBI	AGGCCT	1 cut(s)	150
SspMI	CTAG	2 cut(s)	152, 495
StuI	AGGCCT	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	389
TaqI	TCGA	2 cut(s)	71, 140
TasI	AATT	2 cut(s)	79, 255
Tru1I	TTAA	3 cut(s)	258, 296, 345
Tru9I	TTAA	3 cut(s)	258, 296, 345
TscAI	CASTG	1 cut(s)	424
TseI	GCWGC	2 cut(s)	185, 378
TspDTI	ATGAA	3 cut(s)	20, 494, 569
TspRI	CASTG	1 cut(s)	424
Van91I	CCANNNNNTGG	1 cut(s)	116
XceI	RCATGY	1 cut(s)	265
XspI	CTAG	2 cut(s)	152, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.