Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005174

Physical Location & Seq

Genomic Coordinates Forward (+)

21456303 .. 21457568

Gene Structure 1266 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG194500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGCTGCAGGGACCAATCAATTTTATCATCACAGATTACTGTATGCCAGGGATGAGCAGTTATGATTTGCTGAAACGGATCAAGGGATCTTACTGGAAAGATGTACCAGTCGTGCTTATGTCAGCAGATAATGTACCTTCAAGGATTAGCATGTGCTTGGAAGAAGGGGCTGAGGCGTTTCTTTTGAAGCCACCAAAGTTATCAGATTTGAGAAAGCTAATTCAGCCTTACCTGATCAAATCACTCCACCATTCTGGATTTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

88

Amino Acids

9.97

Weight (kDa)

8.62

Isoelectric Point (pI)

51.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	5 - 74	4.6e-12	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005174)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27180
malus_domestica	MD08G1161200.v1.1 MD15G1346400.v1.1
prunus_persica	Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1
pyrus_communis	pycom08g13860 pycom15g31040
rosa_chinensis	RchiOBHm_Chr5g0027891 RchiOBHm_Chr6g0296091
rosa_laevigata	RLG00000011733 RLG00000033051
rosa_multiflora	Rmu_sc0003139.1_g000038
rosa_roxburghii	Rroxscaffold_1G00051740 Rroxscaffold_7G00178190
rosa_rugosa	Rorug06G0257700
rosa_samantha	Rh5AG196600 Rh5BG194500 Rh5CG214400 Rh5DG196200 Rh6AG370500 Rh6BG377900 Rh6CG383500 Rh6DG370400
rosa_wichuraiana	Rw5G017890 Rw6G032290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	86, 94
AfaI	GTAC	2 cut(s)	105, 135
AgsI	TTSAA	2 cut(s)	141, 187
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
AlwI	GGATC	2 cut(s)	86, 94
ApeKI	GCWGC	1 cut(s)	4
AspS9I	GGNCC	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	11
BbvCI	CCTCAGC	1 cut(s)	171
BciT130I	CCWGG	1 cut(s)	48
BclI	TGATCA	1 cut(s)	234
BfmI	CTRYAG	2 cut(s)	5, 263
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	48
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	48
Bpu10I	CCTNAGC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	47
Bse1I	ACTGG	2 cut(s)	98, 107
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	57
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	2 cut(s)	98, 107
BslFI	GGGAC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	24
Bsp143I	GATC	3 cut(s)	78, 86, 234
BspCNI	CTCAG	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	12
BspMAI	CTGCAG	1 cut(s)	9
BspPI	GGATC	2 cut(s)	86, 94
BsrI	ACTGG	2 cut(s)	98, 107
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	3 cut(s)	78, 86, 234
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	41
BstDEI	CTNAG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	57
BstKTI	GATC	3 cut(s)	81, 89, 237
BstMBI	GATC	3 cut(s)	78, 86, 234
BstMWI	GCNNNNNNNGC	1 cut(s)	223
BstNI	CCWGG	1 cut(s)	48
BstNSI	RCATGY	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	46
BstSFI	CTRYAG	2 cut(s)	5, 263
BstX2I	RGATCY	1 cut(s)	86
BstXI	CCANNNNNNTGG	1 cut(s)	254
BstYI	RGATCY	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	57
Cfr13I	GGNCC	1 cut(s)	11
Csp6I	GTAC	2 cut(s)	104, 134
CviAII	CATG	1 cut(s)	151
CviJI	RGCY	4 cut(s)	170, 190, 217, 226
CviKI_1	RGCY	4 cut(s)	170, 190, 217, 226
CviQI	GTAC	2 cut(s)	104, 134
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	3 cut(s)	80, 88, 236
DpnII	GATC	3 cut(s)	78, 86, 234
Eco47I	GGWCC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	46
FaeI	CATG	1 cut(s)	154
FaiI	YATR	4 cut(s)	44, 63, 119, 152
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	1 cut(s)	150
FbaI	TGATCA	1 cut(s)	234
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	1 cut(s)	64
Fsp4HI	GCNGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	154
Hpy188I	TCNGA	1 cut(s)	205
Hpy188III	TCNNGA	1 cut(s)	255
HpyAV	CCTTC	2 cut(s)	147, 158
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4V	TGCA	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	1 cut(s)	223
HpyF3I	CTNAG	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	154
Ksp22I	TGATCA	1 cut(s)	234
Kzo9I	GATC	3 cut(s)	78, 86, 234
LpnPI	CCDG	6 cut(s)	33, 60, 79, 120, 240, 245
MalI	GATC	3 cut(s)	80, 88, 236
MboI	GATC	3 cut(s)	78, 86, 234
MboII	GAAGA	1 cut(s)	173
MflI	RGATCY	1 cut(s)	86
MluCI	AATT	2 cut(s)	19, 219
MnlI	CCTC	1 cut(s)	166
MspR9I	CCNGG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	223
NdeII	GATC	3 cut(s)	78, 86, 234
NlaIII	CATG	1 cut(s)	154
NlaIV	GGNNCC	1 cut(s)	12
NspI	RCATGY	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	6
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	11
PstI	CTGCAG	1 cut(s)	9
PsuI	RGATCY	1 cut(s)	86
RsaI	GTAC	2 cut(s)	105, 135
RsaNI	GTAC	2 cut(s)	104, 134
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	3 cut(s)	78, 86, 234
Sau96I	GGNCC	1 cut(s)	11
ScrFI	CCNGG	1 cut(s)	48
SetI	ASST	3 cut(s)	139, 219, 234
SfcI	CTRYAG	2 cut(s)	5, 263
SinI	GGWCC	1 cut(s)	11
Sse9I	AATT	2 cut(s)	19, 219
StyD4I	CCNGG	1 cut(s)	46
TaaI	ACNGT	1 cut(s)	41
TasI	AATT	2 cut(s)	19, 219
TseI	GCWGC	1 cut(s)	4
TspGWI	ACGGA	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	11
XceI	RCATGY	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.