Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005174

Physical Location & Seq

Genomic Coordinates Reverse (-)

41064845 .. 41067268

Gene Structure 2424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G494200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTCATCAGTAAGCCTGAAAATGGAGTTGATGAAGTCAGATGTTGCAGACTCCGAACCCCAAAAACAGCAGCAGCAACAAGAAGAAGAACAACATTTCCATGTCTTGGCTGTGGATGATAGTCTTTTGGACAGGAAGCTCTTGGAGAGGCTCCTTAGAGGTTCTTCATATCAAGTGACTTGTGTGGAGTCTGGGGATGAAGCTCTTAAATATCTGGGTTTGGTTGATGACCTAAACCAAAATTCTACAGCTTCCTCTTCATCTACTTCCCCCCACTCATCACAAGTACAAGAGGGATCAAAAGTCATCAATTTGATCATGACAGACTACTGTATGCCCGGGATGAGCGGCTATGATTTGCTGAAACGGGTCAAGAACCGTCACGAGCACGACCACCACGAGACACTTTTCTTACAGGGAGACTCCTGCTTTATATTCTTGCAGGGATCTTCTTGGAAAAACGTACCAGTCGTGGTCATGTCATCAGAGAATGTTCCTTCCAGAATCAGCATGTGCTTGGAAGGAGGGGCTGAGGAGTTTCTTTTGAAGCCACTTCAGCTATCCGATTTGAAGAAGCTTCAACCTTACCTGCTCAAATCCCTTGAACATCATTCTTGCAACGACAACAACAACAACAACAATGTCGTAGTAAATGAGGTCGGAGGCGTTGACCCCGTTGACCAAATCAAAAGCACTGCTTGTGAGAATACTGTTAAGGGCAACAACAACAACAACAATGTTATTATTAGCAAGAGGAAGGCAGTAGTGGCTGCTCAAACAATATCAGAGAGAAGGCCCAAGATGGAGGGGTTAGCTCTGGTAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

276

Amino Acids

30.57

Weight (kDa)

5.49

Isoelectric Point (pI)

55.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005174)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27180
malus_domestica	MD08G1161200.v1.1 MD15G1346400.v1.1
prunus_persica	Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1
pyrus_communis	pycom08g13860 pycom15g31040
rosa_chinensis	RchiOBHm_Chr5g0027891 RchiOBHm_Chr6g0296091
rosa_laevigata	RLG00000011733 RLG00000033051
rosa_multiflora	Rmu_sc0003139.1_g000038
rosa_roxburghii	Rroxscaffold_1G00051740 Rroxscaffold_7G00178190
rosa_rugosa	Rorug06G0257700
rosa_samantha	Rh5AG196600 Rh5BG194500 Rh5CG214400 Rh5DG196200 Rh6AG370500 Rh6BG377900 Rh6CG383500 Rh6DG370400
rosa_wichuraiana	Rw5G017890 Rw6G032290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	597
AccB7I	CCANNNNNTGG	1 cut(s)	106
AccBSI	CCGCTC	1 cut(s)	348
AciI	CCGC	1 cut(s)	348
AclWI	GGATC	2 cut(s)	304, 454
AcsI	RAATTY	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	539
AfaI	GTAC	2 cut(s)	288, 465
AfiI	CCNNNNNNNGG	2 cut(s)	22, 106
AgsI	TTSAA	4 cut(s)	547, 571, 581, 605
AloI	GAACNNNNNNTCC	2 cut(s)	81, 113
AluBI	AGCT	6 cut(s)	139, 203, 251, 559, 577, 815
AluI	AGCT	6 cut(s)	139, 203, 251, 559, 577, 815
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	2 cut(s)	395, 414
AlwI	GGATC	2 cut(s)	304, 454
Ama87I	CYCGRG	1 cut(s)	338
AoxI	GGCC	1 cut(s)	794
ApeKI	GCWGC	3 cut(s)	70, 73, 770
ApoI	RAATTY	1 cut(s)	241
AspS9I	GGNCC	1 cut(s)	795
AsuC2I	CCSGG	2 cut(s)	339, 340
AvaI	CYCGRG	1 cut(s)	338
BauI	CACGAG	2 cut(s)	383, 398
Bbv12I	GWGCWC	1 cut(s)	390
BbvCI	CCTCAGC	1 cut(s)	531
BbvI	GCAGC	3 cut(s)	82, 85, 757
BccI	CCATC	1 cut(s)	796
BclI	TGATCA	1 cut(s)	315
BcnI	CCSGG	2 cut(s)	339, 340
BcoDI	GTCTC	2 cut(s)	395, 414
BfmI	CTRYAG	1 cut(s)	246
BfuAI	ACCTGC	1 cut(s)	597
BisI	GCNGC	4 cut(s)	71, 74, 349, 771
BlsI	GCNGC	4 cut(s)	72, 75, 350, 772
Bme1390I	CCNGG	2 cut(s)	339, 340
BmeT110I	CYCGRG	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	795
BmiI	GGNNCC	1 cut(s)	152
BmrFI	CCNGG	2 cut(s)	339, 340
Bpu10I	CCTNAGC	1 cut(s)	531
BpuMI	CCSGG	2 cut(s)	339, 340
BsaJI	CCNNGG	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 106
Bse1I	ACTGG	1 cut(s)	467
BseDI	CCNNGG	1 cut(s)	338
BseGI	GGATG	3 cut(s)	121, 202, 348
BseLI	CCNNNNNNNGG	2 cut(s)	22, 106
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	1 cut(s)	467
BseRI	GAGGAG	1 cut(s)	548
BseXI	GCAGC	3 cut(s)	82, 85, 757
BshFI	GGCC	1 cut(s)	796
BsiHKAI	GWGCWC	1 cut(s)	390
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	1 cut(s)	339
BslI	CCNNNNNNNGG	2 cut(s)	22, 106
BsmAI	GTCTC	2 cut(s)	395, 414
BsnI	GGCC	1 cut(s)	796
BsoBI	CYCGRG	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	3 cut(s)	296, 315, 446
BspACI	CCGC	1 cut(s)	348
BspANI	GGCC	1 cut(s)	796
BspCNI	CTCAG	1 cut(s)	523
BspHI	TCATGA	1 cut(s)	318
BspLI	GGNNCC	1 cut(s)	152
BspMI	ACCTGC	1 cut(s)	597
BspPI	GGATC	2 cut(s)	304, 454
BsrBI	CCGCTC	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	467
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	3 cut(s)	296, 315, 446
BssSI	CACGAG	2 cut(s)	383, 398
Bst2BI	CACGAG	2 cut(s)	383, 398
Bst4CI	ACNGT	3 cut(s)	332, 380, 712
Bst6I	CTCTTC	1 cut(s)	262
BstDEI	CTNAG	2 cut(s)	155, 531
BstF5I	GGATG	3 cut(s)	121, 202, 348
BstKTI	GATC	3 cut(s)	299, 318, 449
BstMAI	GTCTC	2 cut(s)	395, 414
BstMBI	GATC	3 cut(s)	296, 315, 446
BstMWI	GCNNNNNNNGC	2 cut(s)	556, 767
BstNSI	RCATGY	1 cut(s)	514
BstSCI	CCNGG	2 cut(s)	337, 338
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	3 cut(s)	82, 85, 757
BstX2I	RGATCY	1 cut(s)	446
BstYI	RGATCY	1 cut(s)	446
BsuRI	GGCC	1 cut(s)	796
BtsCI	GGATG	3 cut(s)	121, 202, 348
BtsI	GCAGTG	1 cut(s)	693
BtsIMutI	CAGTG	1 cut(s)	693
BveI	ACCTGC	1 cut(s)	597
CciI	TCATGA	1 cut(s)	318
Cfr13I	GGNCC	1 cut(s)	795
Cfr9I	CCCGGG	1 cut(s)	338
Csp6I	GTAC	2 cut(s)	287, 464
CviAII	CATG	4 cut(s)	101, 319, 478, 511
CviQI	GTAC	2 cut(s)	287, 464
DdeI	CTNAG	2 cut(s)	155, 531
DpnI	GATC	3 cut(s)	298, 317, 448
DpnII	GATC	3 cut(s)	296, 315, 446
Eam1104I	CTCTTC	1 cut(s)	262
EarI	CTCTTC	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	539
Eco88I	CYCGRG	1 cut(s)	338
FaeI	CATG	4 cut(s)	104, 322, 481, 514
FaiI	YATR	9 cut(s)	102, 169, 320, 335, 354, 434, 479, 512, 826
FalI	AAGNNNNNCTT	2 cut(s)	682, 714
FatI	CATG	4 cut(s)	100, 318, 477, 510
FbaI	TGATCA	1 cut(s)	315
Fnu4HI	GCNGC	4 cut(s)	71, 74, 349, 771
FokI	GGATG	3 cut(s)	128, 209, 355
Fsp4HI	GCNGC	4 cut(s)	71, 74, 349, 771
GluI	GCNGC	4 cut(s)	71, 74, 349, 771
HaeIII	GGCC	1 cut(s)	796
HapII	CCGG	1 cut(s)	339
Hin1II	CATG	4 cut(s)	104, 322, 481, 514
HincII	GTYRAC	2 cut(s)	670, 679
HindII	GTYRAC	2 cut(s)	670, 679
HindIII	AAGCTT	1 cut(s)	575
HinfI	GANTC	4 cut(s)	50, 188, 422, 504
HpaII	CCGG	1 cut(s)	339
Hpy166II	GTNNAC	2 cut(s)	670, 679
Hpy188I	TCNGA	6 cut(s)	40, 55, 487, 565, 662, 787
Hpy188III	TCNNGA	4 cut(s)	319, 373, 383, 501
Hpy8I	GTNNAC	2 cut(s)	670, 679
HpyAV	CCTTC	4 cut(s)	507, 515, 751, 786
HpyCH4III	ACNGT	3 cut(s)	332, 380, 712
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	3 cut(s)	47, 442, 618
HpyF10VI	GCNNNNNNNGC	2 cut(s)	556, 767
HpyF3I	CTNAG	2 cut(s)	155, 531
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	4 cut(s)	104, 322, 481, 514
Ksp22I	TGATCA	1 cut(s)	315
Kzo9I	GATC	3 cut(s)	296, 315, 446
LmnI	GCTCC	1 cut(s)	156
Lsp1109I	GCAGC	3 cut(s)	82, 85, 757
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	2 cut(s)	175, 380
MalI	GATC	3 cut(s)	298, 317, 448
MbiI	CCGCTC	1 cut(s)	348
MboI	GATC	3 cut(s)	296, 315, 446
MboII	GAAGA	6 cut(s)	95, 98, 156, 249, 441, 583
MflI	RGATCY	1 cut(s)	446
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	2 cut(s)	241, 310
MlyI	GAGTC	3 cut(s)	44, 197, 416
MmeI	TCCRAC	1 cut(s)	640
MseI	TTAA	2 cut(s)	207, 714
MslI	CAYNNNNRTG	1 cut(s)	99
MspI	CCGG	1 cut(s)	339
MspR9I	CCNGG	2 cut(s)	339, 340
MwoI	GCNNNNNNNGC	2 cut(s)	556, 767
NciI	CCSGG	2 cut(s)	339, 340
NdeII	GATC	3 cut(s)	296, 315, 446
NlaIII	CATG	4 cut(s)	104, 322, 481, 514
NlaIV	GGNNCC	1 cut(s)	152
NmuCI	GTSAC	2 cut(s)	175, 380
NspI	RCATGY	1 cut(s)	514
PagI	TCATGA	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	2 cut(s)	396, 468
PfeI	GAWTC	1 cut(s)	504
PflMI	CCANNNNNTGG	1 cut(s)	106
PkrI	GCNGC	4 cut(s)	72, 75, 350, 772
PleI	GAGTC	3 cut(s)	44, 196, 416
PpsI	GAGTC	3 cut(s)	44, 196, 416
PspN4I	GGNNCC	1 cut(s)	152
PspPI	GGNCC	1 cut(s)	795
PsuI	RGATCY	1 cut(s)	446
RsaI	GTAC	2 cut(s)	288, 465
RsaNI	GTAC	2 cut(s)	287, 464
RseI	CAYNNNNRTG	1 cut(s)	99
SaqAI	TTAA	2 cut(s)	207, 714
SatI	GCNGC	4 cut(s)	71, 74, 349, 771
Sau3AI	GATC	3 cut(s)	296, 315, 446
Sau96I	GGNCC	1 cut(s)	795
SchI	GAGTC	3 cut(s)	44, 197, 416
ScrFI	CCNGG	2 cut(s)	339, 340
SduI	GDGCHC	1 cut(s)	390
SfcI	CTRYAG	1 cut(s)	246
SmaI	CCCGGG	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	99
Sse9I	AATT	2 cut(s)	241, 310
SsiI	CCGC	1 cut(s)	348
StyD4I	CCNGG	2 cut(s)	337, 338
TaaI	ACNGT	3 cut(s)	332, 380, 712
TaiI	ACGT	1 cut(s)	465
TasI	AATT	2 cut(s)	241, 310
TatI	WGTACW	1 cut(s)	286
TauI	GCSGC	1 cut(s)	351
TfiI	GAWTC	1 cut(s)	504
Tru1I	TTAA	2 cut(s)	207, 714
Tru9I	TTAA	2 cut(s)	207, 714
TscAI	CASTG	1 cut(s)	700
TseFI	GTSAC	2 cut(s)	175, 380
TseI	GCWGC	3 cut(s)	70, 73, 770
Tsp45I	GTSAC	2 cut(s)	175, 380
TspDTI	ATGAA	4 cut(s)	47, 156, 213, 249
TspMI	CCCGGG	1 cut(s)	338
TspRI	CASTG	1 cut(s)	700
Van91I	CCANNNNNTGG	1 cut(s)	106
XapI	RAATTY	1 cut(s)	241
XceI	RCATGY	1 cut(s)	514
XmaI	CCCGGG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.