Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005174

Physical Location & Seq

Genomic Coordinates Forward (+)

22647082 .. 22648977

Gene Structure 1896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033051

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGAGGTGGTGAAGTCATCAGAATTAGTTACAGCAGACTCCAAACAACAGCAACAGTTCCATCTGTTGGTTGTGGATGACAGTGAGCTGGACAGGAAACTCGTTGAGACGCTCCTTAAACGTTCTACCTTCAAAGTGACCTGTGTGGATTCTGGGGATGAAGCTCTTAAGACTTTAGGTTTGCTTGATATTGATCTAAACCAAAGTTCTTCGGATTCTACTCCAACCATTTCGCCGAAGTCATCATCAGATCAAGAGGGGTCAATCAATTTGATCATCACAGACTACTGTATGCCAGGGATGAGCGGTTATGATTTGTTGAAACGGATCAAGGGATCTTACTGGAAAGATGTACCAGTCGTGGTTATGTCAGCAGATAATGTACCTTCAAGGATTAGCATGTGCTTGGAAGAAGGGGCTGAGGCGTTTCTTTTGAAGCCACCTAAGTTATCAGATTTGAGAAAGCTAATTCAGCCTTACCTGATCAAATCACTCCACCATTCTGGTAACAACAACACTGACAGTAGTTGGGAGGTTGCTAATATCAATGACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

186

Amino Acids

20.49

Weight (kDa)

4.85

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	85 - 157	1.9e-14	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005174)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27180
malus_domestica	MD08G1161200.v1.1 MD15G1346400.v1.1
prunus_persica	Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1
pyrus_communis	pycom08g13860 pycom15g31040
rosa_chinensis	RchiOBHm_Chr5g0027891 RchiOBHm_Chr6g0296091
rosa_laevigata	RLG00000011733 RLG00000033051
rosa_multiflora	Rmu_sc0003139.1_g000038
rosa_roxburghii	Rroxscaffold_1G00051740 Rroxscaffold_7G00178190
rosa_rugosa	Rorug06G0257700
rosa_samantha	Rh5AG196600 Rh5BG194500 Rh5CG214400 Rh5DG196200 Rh6AG370500 Rh6BG377900 Rh6CG383500 Rh6DG370400
rosa_wichuraiana	Rw5G017890 Rw6G032290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	67
AccBSI	CCGCTC	1 cut(s)	306
AciI	CCGC	1 cut(s)	306
AclI	AACGTT	1 cut(s)	121
AclWI	GGATC	2 cut(s)	335, 343
AfaI	GTAC	2 cut(s)	354, 384
AfiI	CCNNNNNNNGG	1 cut(s)	67
AflII	CTTAAG	1 cut(s)	167
AgsI	TTSAA	4 cut(s)	133, 322, 390, 436
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	3 cut(s)	88, 164, 466
AluI	AGCT	3 cut(s)	88, 164, 466
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	2 cut(s)	335, 343
ArsI	GACNNNNNNTTYG	2 cut(s)	163, 195
AsuHPI	GGTGA	1 cut(s)	22
BbvCI	CCTCAGC	1 cut(s)	420
BccI	CCATC	1 cut(s)	69
BciT130I	CCWGG	1 cut(s)	297
BclI	TGATCA	2 cut(s)	273, 483
BcoDI	GTCTC	1 cut(s)	101
BfrI	CTTAAG	1 cut(s)	167
Bme1390I	CCNGG	1 cut(s)	297
BmrFI	CCNGG	1 cut(s)	297
Bpu10I	CCTNAGC	1 cut(s)	420
BsaBI	GATNNNNATC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	3 cut(s)	347, 356, 553
Bse8I	GATNNNNATC	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	296
BseGI	GGATG	3 cut(s)	82, 163, 306
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	3 cut(s)	347, 356, 553
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	101
BsmBI	CGTCTC	1 cut(s)	101
Bsp143I	GATC	6 cut(s)	193, 250, 273, 327, 335, 483
BspACI	CCGC	1 cut(s)	306
BspCNI	CTCAG	1 cut(s)	412
BspPI	GGATC	2 cut(s)	335, 343
BspTI	CTTAAG	1 cut(s)	167
BsrBI	CCGCTC	1 cut(s)	306
BsrI	ACTGG	3 cut(s)	347, 356, 553
BssECI	CCNNGG	1 cut(s)	296
BssMI	GATC	6 cut(s)	193, 250, 273, 327, 335, 483
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	4 cut(s)	57, 83, 290, 524
BstAFI	CTTAAG	1 cut(s)	167
BstDEI	CTNAG	2 cut(s)	420, 444
BstF5I	GGATG	3 cut(s)	82, 163, 306
BstKTI	GATC	6 cut(s)	196, 253, 276, 330, 338, 486
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	6 cut(s)	193, 250, 273, 327, 335, 483
BstMWI	GCNNNNNNNGC	1 cut(s)	472
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	403
BstSCI	CCNGG	1 cut(s)	295
BstX2I	RGATCY	1 cut(s)	335
BstXI	CCANNNNNNTGG	1 cut(s)	503
BstYI	RGATCY	1 cut(s)	335
BtsCI	GGATG	3 cut(s)	82, 163, 306
BtsIMutI	CAGTG	2 cut(s)	88, 516
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	2 cut(s)	353, 383
CviAII	CATG	1 cut(s)	400
CviJI	RGCY	6 cut(s)	88, 164, 419, 439, 466, 475
CviKI_1	RGCY	6 cut(s)	88, 164, 419, 439, 466, 475
CviQI	GTAC	2 cut(s)	353, 383
DdeI	CTNAG	2 cut(s)	420, 444
DpnI	GATC	6 cut(s)	195, 252, 275, 329, 337, 485
DpnII	GATC	6 cut(s)	193, 250, 273, 327, 335, 483
EcoRII	CCWGG	1 cut(s)	295
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	1 cut(s)	403
FaiI	YATR	4 cut(s)	293, 312, 368, 401
FatI	CATG	1 cut(s)	399
FbaI	TGATCA	2 cut(s)	273, 483
FokI	GGATG	3 cut(s)	89, 170, 313
HgaI	GACGC	1 cut(s)	118
Hin1II	CATG	1 cut(s)	403
HinfI	GANTC	3 cut(s)	38, 149, 215
HphI	GGTGA	1 cut(s)	22
Hpy188I	TCNGA	4 cut(s)	22, 214, 250, 454
Hpy188III	TCNNGA	1 cut(s)	254
HpyAV	CCTTC	3 cut(s)	139, 396, 407
HpyCH4III	ACNGT	4 cut(s)	57, 83, 290, 524
HpyCH4IV	ACGT	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	472
HpyF3I	CTNAG	2 cut(s)	420, 444
HpySE526I	ACGT	1 cut(s)	121
Hsp92II	CATG	1 cut(s)	403
Ksp22I	TGATCA	2 cut(s)	273, 483
Kzo9I	GATC	6 cut(s)	193, 250, 273, 327, 335, 483
LmnI	GCTCC	1 cut(s)	117
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	3 cut(s)	28, 136, 506
MalI	GATC	6 cut(s)	195, 252, 275, 329, 337, 485
MbiI	CCGCTC	1 cut(s)	306
MboI	GATC	6 cut(s)	193, 250, 273, 327, 335, 483
MboII	GAAGA	2 cut(s)	201, 422
MflI	RGATCY	1 cut(s)	335
MluCI	AATT	3 cut(s)	23, 268, 468
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	248
MnlI	CCTC	3 cut(s)	250, 415, 526
MseI	TTAA	2 cut(s)	117, 168
MspCI	CTTAAG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	1 cut(s)	472
NdeII	GATC	6 cut(s)	193, 250, 273, 327, 335, 483
NlaIII	CATG	1 cut(s)	403
NmuCI	GTSAC	1 cut(s)	136
NspI	RCATGY	1 cut(s)	403
PfeI	GAWTC	2 cut(s)	149, 215
PflMI	CCANNNNNTGG	1 cut(s)	67
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
Psp1406I	AACGTT	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	335
RsaI	GTAC	2 cut(s)	354, 384
RsaNI	GTAC	2 cut(s)	353, 383
SaqAI	TTAA	2 cut(s)	117, 168
Sau3AI	GATC	6 cut(s)	193, 250, 273, 327, 335, 483
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	297
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	3 cut(s)	23, 268, 468
SsiI	CCGC	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	295
TaaI	ACNGT	4 cut(s)	57, 83, 290, 524
TaiI	ACGT	1 cut(s)	124
TasI	AATT	3 cut(s)	23, 268, 468
TfiI	GAWTC	2 cut(s)	149, 215
Tru1I	TTAA	2 cut(s)	117, 168
Tru9I	TTAA	2 cut(s)	117, 168
TscAI	CASTG	2 cut(s)	88, 523
TseFI	GTSAC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	174
TspGWI	ACGGA	1 cut(s)	340
TspRI	CASTG	2 cut(s)	88, 523
Van91I	CCANNNNNTGG	1 cut(s)	67
Vha464I	CTTAAG	1 cut(s)	167
XceI	RCATGY	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.