Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005174

Physical Location & Seq

Genomic Coordinates Forward (+)

21775054 .. 21778468

Gene Structure 3415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG196200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGTCCTTGAGACACTGTTTGGTAGGGGATCAAATCTAGGTGGAGGGGAGGGCATGGAAATATTATTAAGGTGCTTGGAGGAAGGGGCTGAGGCGTTTCTTTTGAAGCCACCAAAGTTATCAGATTTGAGAAAGCTAATTCAGCCTTACCTGATCAAATCACTCCACCATTCTGGTAACAACAACACTGACAGTTGCTGGGAGGCTGCTGATATCAATGACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

75

Amino Acids

8.27

Weight (kDa)

4.95

Isoelectric Point (pI)

33.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005174)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27180
malus_domestica	MD08G1161200.v1.1 MD15G1346400.v1.1
prunus_persica	Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1
pyrus_communis	pycom08g13860 pycom15g31040
rosa_chinensis	RchiOBHm_Chr5g0027891 RchiOBHm_Chr6g0296091
rosa_laevigata	RLG00000011733 RLG00000033051
rosa_multiflora	Rmu_sc0003139.1_g000038
rosa_roxburghii	Rroxscaffold_1G00051740 Rroxscaffold_7G00178190
rosa_rugosa	Rorug06G0257700
rosa_samantha	Rh5AG196600 Rh5BG194500 Rh5CG214400 Rh5DG196200 Rh6AG370500 Rh6BG377900 Rh6CG383500 Rh6DG370400
rosa_wichuraiana	Rw5G017890 Rw6G032290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	106
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	5
AlwI	GGATC	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	198
ApeKI	GCWGC	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	4
BbvCI	CCTCAGC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	193
BclI	TGATCA	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	5
BfaI	CTAG	1 cut(s)	38
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
Bpu10I	CCTNAGC	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	223
BseXI	GCAGC	1 cut(s)	193
BseYI	CCCAGC	1 cut(s)	198
BsmAI	GTCTC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	29, 153
BspCNI	CTCAG	1 cut(s)	82
BspPI	GGATC	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	223
BssMI	GATC	2 cut(s)	29, 153
Bst4CI	ACNGT	2 cut(s)	18, 194
BstDEI	CTNAG	1 cut(s)	90
BstKTI	GATC	2 cut(s)	32, 156
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	2 cut(s)	29, 153
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	193
BstXI	CCANNNNNNTGG	1 cut(s)	173
BtsIMutI	CAGTG	2 cut(s)	14, 186
CaiI	CAGNNNCTG	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	5 cut(s)	89, 109, 136, 145, 206
CviKI_1	RGCY	5 cut(s)	89, 109, 136, 145, 206
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	2 cut(s)	31, 155
DpnII	GATC	2 cut(s)	29, 153
Eco32I	GATATC	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	4
EcoRV	GATATC	1 cut(s)	214
FaeI	CATG	1 cut(s)	58
FaiI	YATR	1 cut(s)	56
FatI	CATG	1 cut(s)	54
FbaI	TGATCA	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	1 cut(s)	38
GluI	GCNGC	1 cut(s)	207
GsaI	CCCAGC	1 cut(s)	202
Hin1II	CATG	1 cut(s)	58
Hpy188I	TCNGA	1 cut(s)	124
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	2 cut(s)	18, 194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpyF3I	CTNAG	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	58
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	2 cut(s)	29, 153
LpnPI	CCDG	3 cut(s)	159, 164, 184
Lsp1109I	GCAGC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	2 cut(s)	31, 155
MboI	GATC	2 cut(s)	29, 153
MluCI	AATT	1 cut(s)	138
MnlI	CCTC	5 cut(s)	38, 43, 73, 85, 196
MseI	TTAA	1 cut(s)	68
MwoI	GCNNNNNNNGC	1 cut(s)	142
NdeII	GATC	2 cut(s)	29, 153
NlaIII	CATG	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	1 cut(s)	198
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	2 cut(s)	29, 153
Sau96I	GGNCC	1 cut(s)	4
SetI	ASST	4 cut(s)	43, 74, 138, 153
SgeI	CNNG	7 cut(s)	20, 50, 67, 88, 163, 186, 211
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	1 cut(s)	138
SspI	AATATT	1 cut(s)	63
SspMI	CTAG	1 cut(s)	38
TaaI	ACNGT	2 cut(s)	18, 194
TasI	AATT	1 cut(s)	138
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TscAI	CASTG	2 cut(s)	21, 193
TseI	GCWGC	1 cut(s)	206
TspRI	CASTG	2 cut(s)	21, 193
VpaK11BI	GGWCC	1 cut(s)	4
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.