Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005174

Physical Location & Seq

Genomic Coordinates Forward (+)

21734810 .. 21763297

Gene Structure 28488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG214400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGGGATTATGTTCGATCATCAAAAGGCTATAAATTTGAGTGGGATGTCAAAAAAGGCTTACACAAGATCCTTCAATTCCTTGCAGAACGGCCTTGGTTCAAGAACAAAGTGGATGTTAGAGAACTTGCAATTCAATTTGGATGACCTGGAAGCAAAGATTCACACCTTCAGAAATTTCCTCCATCTGAGGACTGAGGCACAAGGGAATACCTCCAATGGGAAGAGCATTGTGGCTTGTGCTTTGAGTGGGAGTTTGTACTGCAGGGGAAAGCGAAGCGATGGTGAAACTTTTCTTTCTGCAGATGACCTTAGAATAAACTTGTGGAGTCTTAAGATCAGCGATCAATTGGCCGAACTTGTGAATAGCGAGAGAAGCGACCTCCAACTCAGAGTTCCTGATCGAATCGGAGCCGTCGACGTCGCAGATCTATGCACAGAGGCTCTCCAGCAGCAAGTTCTGTATCTTCGAGTACGACGACGGCGACATGTCCAGGATCGGAGAGGCTCTGAGGTTCGAGTGCATCCCCGTGGTGATTATGGACGACCCGATCCAGGACCTGCTGTTCATGGACGTGCTGAGGTGGTAGGAGATGGCGTTGTTCATGGGGAGGAGAGGTGGGGCCAAGGAGTTGGAGCATTGACCTGTGTGGATTCTGGGGATGAAGCTCTTAAGACTTTAGGTTTGCTTGATATTGATCTAAACCAAAGTTCTTCGGATTCTACTCCAACCATTTCGCCGAATTCATCATCAGATCAAGAGGGACCAATCAATTTTATCATCACAGATTACTGTATGCCAGGGATGAGCAGTTATGATTTGCTGAAACGGATCAAGGGATCTTACTGGAAAGATGTACCAGTCGTGATTATGTCAGCAGATAATGTACCTTCAAGGATTAGCATGTGCTTGGAAGAAGCGGCTGAGGCGTTTCTTTTGAAGCCACCAAAGTTATCAGATTTGAGAAAGCTAATTCAGCCTTACCTGATCAAATCACTCCACCATTCTGGATTTCTGGTAACAACAACACTGACAGTAGTTGGGAGGTTGCTGATATCAATGACCAGTAAAAAAAACAAAACAAAACAAAAGCACTTGAGAATAAGTGACAATTTGTACATGTATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

376

Amino Acids

42.01

Weight (kDa)

8.78

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	254 - 325	4.1e-10	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005174)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27180
malus_domestica	MD08G1161200.v1.1 MD15G1346400.v1.1
prunus_persica	Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1
pyrus_communis	pycom08g13860 pycom15g31040
rosa_chinensis	RchiOBHm_Chr5g0027891 RchiOBHm_Chr6g0296091
rosa_laevigata	RLG00000011733 RLG00000033051
rosa_multiflora	Rmu_sc0003139.1_g000038
rosa_roxburghii	Rroxscaffold_1G00051740 Rroxscaffold_7G00178190
rosa_rugosa	Rorug06G0257700
rosa_samantha	Rh5AG196600 Rh5BG194500 Rh5CG214400 Rh5DG196200 Rh6AG370500 Rh6BG377900 Rh6CG383500 Rh6DG370400
rosa_wichuraiana	Rw5G017890 Rw6G032290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	423
Acc36I	ACCTGC	1 cut(s)	568
AccI	GTMKAC	1 cut(s)	417
AciI	CCGC	1 cut(s)	920
AclWI	GGATC	5 cut(s)	63, 504, 545, 839, 847
AcoI	YGGCCR	1 cut(s)	351
AcsI	RAATTY	3 cut(s)	34, 175, 742
AcuI	CTGAAG	1 cut(s)	154
AcyI	GRCGYC	1 cut(s)	420
AfaI	GTAC	5 cut(s)	260, 474, 858, 888, 1118
AfiI	CCNNNNNNNGG	2 cut(s)	219, 554
AflII	CTTAAG	2 cut(s)	332, 671
AflIII	ACRYGT	2 cut(s)	487, 1119
AgsI	TTSAA	5 cut(s)	76, 102, 136, 894, 940
AjiI	CACGTC	1 cut(s)	575
AjnI	CCWGG	4 cut(s)	147, 492, 553, 799
AjuI	GAANNNNNNNTTGG	2 cut(s)	378, 410
AloI	GAACNNNNNNTCC	2 cut(s)	549, 581
AluBI	AGCT	2 cut(s)	668, 970
AluI	AGCT	2 cut(s)	668, 970
AlwI	GGATC	5 cut(s)	63, 504, 545, 839, 847
AlwNI	CAGNNNCTG	1 cut(s)	560
AoxI	GGCC	3 cut(s)	91, 351, 622
ApeKI	GCWGC	1 cut(s)	451
ApoI	RAATTY	3 cut(s)	34, 175, 742
ArsI	GACNNNNNNTTYG	2 cut(s)	667, 699
Asp700I	GAANNNNTTC	1 cut(s)	291
AspS9I	GGNCC	3 cut(s)	557, 622, 764
AsuHPI	GGTGA	2 cut(s)	296, 545
AvaII	GGWCC	2 cut(s)	557, 764
BbvCI	CCTCAGC	2 cut(s)	579, 924
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	3 cut(s)	192, 275, 587
BceAI	ACGGC	3 cut(s)	106, 398, 497
BciT130I	CCWGG	4 cut(s)	149, 494, 555, 801
BclI	TGATCA	1 cut(s)	987
BfmI	CTRYAG	2 cut(s)	262, 300
BfrI	CTTAAG	2 cut(s)	332, 671
BfuAI	ACCTGC	1 cut(s)	568
BglII	AGATCT	1 cut(s)	427
BisI	GCNGC	2 cut(s)	452, 921
BlsI	GCNGC	2 cut(s)	453, 922
Bme1390I	CCNGG	4 cut(s)	149, 494, 555, 801
Bme18I	GGWCC	2 cut(s)	557, 764
BmgBI	CACGTC	1 cut(s)	575
BmgT120I	GGNCC	3 cut(s)	557, 622, 764
BmiI	GGNNCC	3 cut(s)	412, 623, 765
BmrFI	CCNGG	4 cut(s)	149, 494, 555, 801
BmsI	GCATC	1 cut(s)	532
BpmI	CTGGAG	1 cut(s)	431
Bpu10I	CCTNAGC	2 cut(s)	579, 924
BpuEI	CTTGAG	1 cut(s)	1117
BsaBI	GATNNNNATC	1 cut(s)	696
BsaHI	GRCGYC	1 cut(s)	420
BsaJI	CCNNGG	4 cut(s)	94, 529, 625, 800
BsaXI	ACNNNNNCTCC	4 cut(s)	582, 602, 612, 632
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 554
Bse1I	ACTGG	3 cut(s)	851, 860, 1065
Bse8I	GATNNNNATC	1 cut(s)	696
BseBI	CCWGG	4 cut(s)	149, 494, 555, 801
BseDI	CCNNGG	4 cut(s)	94, 529, 625, 800
BseGI	GGATG	6 cut(s)	51, 120, 148, 523, 667, 810
BseJI	GATNNNNATC	1 cut(s)	696
BseLI	CCNNNNNNNGG	2 cut(s)	219, 554
BseMII	CTCAG	6 cut(s)	179, 186, 403, 501, 570, 915
BseNI	ACTGG	3 cut(s)	851, 860, 1065
BseRI	GAGGAG	1 cut(s)	626
BseXI	GCAGC	1 cut(s)	463
BshFI	GGCC	3 cut(s)	93, 353, 624
BslFI	GGGAC	1 cut(s)	777
BslI	CCNNNNNNNGG	2 cut(s)	219, 554
BsmFI	GGGAC	1 cut(s)	777
BsnI	GGCC	3 cut(s)	93, 353, 624
Bsp1407I	TGTACA	1 cut(s)	1116
BspACI	CCGC	1 cut(s)	920
BspANI	GGCC	3 cut(s)	93, 353, 624
BspCNI	CTCAG	6 cut(s)	180, 187, 402, 502, 571, 916
BspLI	GGNNCC	3 cut(s)	412, 623, 765
BspMAI	CTGCAG	2 cut(s)	266, 304
BspMI	ACCTGC	1 cut(s)	568
BspPI	GGATC	5 cut(s)	63, 504, 545, 839, 847
BspQI	GCTCTTC	1 cut(s)	218
BspTI	CTTAAG	2 cut(s)	332, 671
BsrGI	TGTACA	1 cut(s)	1116
BsrI	ACTGG	3 cut(s)	851, 860, 1065
BssECI	CCNNGG	4 cut(s)	94, 529, 625, 800
BssNI	GRCGYC	1 cut(s)	420
BssT1I	CCWWGG	2 cut(s)	94, 625
Bst2UI	CCWGG	4 cut(s)	149, 494, 555, 801
Bst4CI	ACNGT	2 cut(s)	794, 1036
Bst6I	CTCTTC	1 cut(s)	218
BstACI	GRCGYC	1 cut(s)	420
BstAFI	CTTAAG	2 cut(s)	332, 671
BstAUI	TGTACA	1 cut(s)	1116
BstDEI	CTNAG	7 cut(s)	188, 195, 311, 389, 510, 579, 924
BstDSI	CCRYGG	1 cut(s)	529
BstF5I	GGATG	6 cut(s)	51, 120, 148, 523, 667, 810
BstMWI	GCNNNNNNNGC	3 cut(s)	375, 926, 976
BstNI	CCWGG	4 cut(s)	149, 494, 555, 801
BstNSI	RCATGY	3 cut(s)	491, 907, 1123
BstSCI	CCNGG	4 cut(s)	147, 492, 553, 799
BstSFI	CTRYAG	2 cut(s)	262, 300
BstV1I	GCAGC	1 cut(s)	463
BstX2I	RGATCY	3 cut(s)	68, 427, 839
BstXI	CCANNNNNNTGG	2 cut(s)	632, 1007
BstYI	RGATCY	3 cut(s)	68, 427, 839
BsuRI	GGCC	3 cut(s)	93, 353, 624
BtgI	CCRYGG	1 cut(s)	529
BtgZI	GCGATG	1 cut(s)	294
BtrI	CACGTC	1 cut(s)	575
BtsCI	GGATG	6 cut(s)	51, 120, 148, 523, 667, 810
BtsIMutI	CAGTG	1 cut(s)	1028
BveI	ACCTGC	1 cut(s)	568
CaiI	CAGNNNCTG	1 cut(s)	560
Cfr13I	GGNCC	3 cut(s)	557, 622, 764
Csp6I	GTAC	5 cut(s)	259, 473, 857, 887, 1117
CviAII	CATG	5 cut(s)	488, 569, 605, 904, 1120
CviQI	GTAC	5 cut(s)	259, 473, 857, 887, 1117
DdeI	CTNAG	7 cut(s)	188, 195, 311, 389, 510, 579, 924
EaeI	YGGCCR	1 cut(s)	351
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco130I	CCWWGG	2 cut(s)	94, 625
Eco32I	GATATC	1 cut(s)	1056
Eco47I	GGWCC	2 cut(s)	557, 764
Eco57I	CTGAAG	1 cut(s)	154
EcoO109I	RGGNCCY	1 cut(s)	557
EcoRI	GAATTC	1 cut(s)	742
EcoRII	CCWGG	4 cut(s)	147, 492, 553, 799
EcoRV	GATATC	1 cut(s)	1056
EcoT14I	CCWWGG	2 cut(s)	94, 625
ErhI	CCWWGG	2 cut(s)	94, 625
FaeI	CATG	5 cut(s)	491, 572, 608, 907, 1123
FaqI	GGGAC	1 cut(s)	777
FatI	CATG	5 cut(s)	487, 568, 604, 903, 1119
FbaI	TGATCA	1 cut(s)	987
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	2 cut(s)	452, 921
FokI	GGATG	6 cut(s)	58, 127, 155, 510, 674, 817
Fsp4HI	GCNGC	2 cut(s)	452, 921
GluI	GCNGC	2 cut(s)	452, 921
GsuI	CTGGAG	1 cut(s)	431
HaeIII	GGCC	3 cut(s)	93, 353, 624
Hin1I	GRCGYC	1 cut(s)	420
Hin1II	CATG	5 cut(s)	491, 572, 608, 907, 1123
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HinfI	GANTC	5 cut(s)	160, 328, 405, 653, 719
HphI	GGTGA	2 cut(s)	296, 545
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	9 cut(s)	173, 189, 392, 410, 501, 511, 718, 754, 958
Hpy188III	TCNNGA	5 cut(s)	102, 398, 758, 865, 1008
Hpy8I	GTNNAC	1 cut(s)	418
Hpy99I	CGWCG	5 cut(s)	419, 422, 425, 480, 483
HpyAV	CCTTC	3 cut(s)	82, 178, 900
HpyCH4III	ACNGT	2 cut(s)	794, 1036
HpyCH4IV	ACGT	2 cut(s)	420, 574
HpyCH4V	TGCA	6 cut(s)	85, 130, 264, 302, 435, 523
HpyF10VI	GCNNNNNNNGC	3 cut(s)	375, 926, 976
HpyF3I	CTNAG	7 cut(s)	188, 195, 311, 389, 510, 579, 924
HpySE526I	ACGT	2 cut(s)	420, 574
Hsp92I	GRCGYC	1 cut(s)	420
Hsp92II	CATG	5 cut(s)	491, 572, 608, 907, 1123
Ksp22I	TGATCA	1 cut(s)	987
LguI	GCTCTTC	1 cut(s)	218
LmnI	GCTCC	2 cut(s)	410, 635
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	1 cut(s)	532
MaeII	ACGT	2 cut(s)	420, 574
MaeIII	GTNAC	2 cut(s)	1018, 1106
MboII	GAAGA	4 cut(s)	235, 458, 705, 926
MfeI	CAATTG	1 cut(s)	347
MflI	RGATCY	3 cut(s)	68, 427, 839
MlyI	GAGTC	1 cut(s)	337
MmeI	TCCRAC	3 cut(s)	409, 613, 752
MroXI	GAANNNNTTC	1 cut(s)	291
MseI	TTAA	2 cut(s)	333, 672
MslI	CAYNNNNRTG	2 cut(s)	528, 573
MspCI	CTTAAG	2 cut(s)	332, 671
MspR9I	CCNGG	4 cut(s)	149, 494, 555, 801
MunI	CAATTG	1 cut(s)	347
MvaI	CCWGG	4 cut(s)	149, 494, 555, 801
MwoI	GCNNNNNNNGC	3 cut(s)	375, 926, 976
NlaIII	CATG	5 cut(s)	491, 572, 608, 907, 1123
NlaIV	GGNNCC	3 cut(s)	412, 623, 765
NmuCI	GTSAC	1 cut(s)	1106
NspI	RCATGY	3 cut(s)	491, 907, 1123
PciI	ACATGT	2 cut(s)	487, 1119
PciSI	GCTCTTC	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	3 cut(s)	414, 475, 481
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	4 cut(s)	160, 405, 653, 719
PfoI	TCCNGGA	2 cut(s)	492, 553
PkrI	GCNGC	2 cut(s)	453, 922
PleI	GAGTC	1 cut(s)	336
PpsI	GAGTC	1 cut(s)	336
PpuMI	RGGWCCY	1 cut(s)	557
PscI	ACATGT	2 cut(s)	487, 1119
Psp5II	RGGWCCY	1 cut(s)	557
Psp6I	CCWGG	4 cut(s)	147, 492, 553, 799
PspGI	CCWGG	4 cut(s)	147, 492, 553, 799
PspN4I	GGNNCC	3 cut(s)	412, 623, 765
PspPI	GGNCC	3 cut(s)	557, 622, 764
PspPPI	RGGWCCY	1 cut(s)	557
PstI	CTGCAG	2 cut(s)	266, 304
PstNI	CAGNNNCTG	1 cut(s)	560
PsuI	RGATCY	3 cut(s)	68, 427, 839
RsaI	GTAC	5 cut(s)	260, 474, 858, 888, 1118
RsaNI	GTAC	5 cut(s)	259, 473, 857, 887, 1117
RseI	CAYNNNNRTG	2 cut(s)	528, 573
SalI	GTCGAC	1 cut(s)	416
SapI	GCTCTTC	1 cut(s)	218
SaqAI	TTAA	2 cut(s)	333, 672
SatI	GCNGC	2 cut(s)	452, 921
Sau96I	GGNCC	3 cut(s)	557, 622, 764
SchI	GAGTC	1 cut(s)	337
ScrFI	CCNGG	4 cut(s)	149, 494, 555, 801
SfaNI	GCATC	1 cut(s)	532
SfcI	CTRYAG	2 cut(s)	262, 300
SgrDI	CGTCGACG	1 cut(s)	416
SinI	GGWCC	2 cut(s)	557, 764
SmiMI	CAYNNNNRTG	2 cut(s)	528, 573
SmlI	CTYRAG	3 cut(s)	332, 671, 1096
SmoI	CTYRAG	3 cut(s)	332, 671, 1096
SsiI	CCGC	1 cut(s)	920
StyD4I	CCNGG	4 cut(s)	147, 492, 553, 799
StyI	CCWWGG	2 cut(s)	94, 625
TaaI	ACNGT	2 cut(s)	794, 1036
TaiI	ACGT	2 cut(s)	423, 577
TaqI	TCGA	5 cut(s)	15, 403, 417, 469, 517
TatI	WGTACW	2 cut(s)	258, 1116
TauI	GCSGC	1 cut(s)	923
TfiI	GAWTC	4 cut(s)	160, 405, 653, 719
Tru1I	TTAA	2 cut(s)	333, 672
Tru9I	TTAA	2 cut(s)	333, 672
TscAI	CASTG	1 cut(s)	1035
TseFI	GTSAC	1 cut(s)	1106
TseI	GCWGC	1 cut(s)	451
Tsp45I	GTSAC	1 cut(s)	1106
TspDTI	ATGAA	4 cut(s)	557, 593, 678, 735
TspGWI	ACGGA	1 cut(s)	844
TspRI	CASTG	1 cut(s)	1035
Vha464I	CTTAAG	2 cut(s)	332, 671
VpaK11BI	GGWCC	2 cut(s)	557, 764
XapI	RAATTY	3 cut(s)	34, 175, 742
XceI	RCATGY	3 cut(s)	491, 907, 1123
XmiI	GTMKAC	1 cut(s)	417
XmnI	GAANNNNTTC	1 cut(s)	291
ZraI	GACGTC	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.