FvH4_2g30790

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007813
Physical Location & Seq
Reverse (-)
23771651 .. 23774716
3066 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g30790.t1

Sequence Viewer

Length: 3066 bp
ATGCGCGCGCAGCTGCATACCAATCTCCGACCCAAATCAATTCTCTTCTCCACCAAAACCCCGAAAACCCTGGTCCCTCTCTCCAATATCTCCTCCCTTTCGAACCCTATCTCTCACTCGAAACCCTCCTCTTCGTCTTCTCCATGGTTCTCTATCCTCCGCACCGCCATTGCCAACACAGACCTCCCCCTCGGCAAGCGCGCCCACGCCCTCATCCTAACCTCCGGGCAATGCCCAGATCATTTCCTAATCAACAATCTCATCACCATGTATGCCAAATGCAGGTCGCTCGCATATGCACGCCACCTGTTCGATAAAAGTCCTGAGCGAGACCTGGTCACCTGGAACGCCATTTTAGCAGCCTACGCGCAATCGGGTCGCTATCTGGTTGAAAATGCTCAAGAGGCTCTTGGGATTTTTCGGCGGCTTCGTGAGTCTGTTGTGTTCACCAGCGGGCATACTCTGGCGTCGGTTTTGAAGCTGTGTTTGATGTCGGGGCGTGTTTGGGTTTCCGAGGCTGTTCATGGGTATGCGGTGAAGATTGGGTTGGAATGGGATGTGTTTATTACGAGCAACCTGGTGAATGTGTATTGTAAGCTCAGGCGAGTTAAGGAGGCTCGGGCTTTGTTTGATGGGATGGTGGAAAGGGATGTTGTGCTGTGGAACACAATGCTGAAGGCATATGTGGAAATGGGACTGAAGGAGGAAGCGCTTACTCTTTTCTCTGAGTTTCATCGGAGCGGATTAGGTCCTGACAGTGTTAGTGTGCGTTGTGTTCTTGGTGGGATTCGGAAAGTTGATTCTGATGAAGGCAAGAGGCACATGGAGGAGGTTCAAGCATATGCAGCAAAGCTGGGGGAGTTTGTAACTAATGTGGATGATGAAGCCTATCCACCAAGTTTATGTGATCCTTCTACCGATTCCGAGGTGTTTTTGTGGAACAAGACGTTGTCCAAATATGTCCGAGCTGGTGAAAATTGGGCTGCCGTAGAGTGCTTTAGAAATATGATTAGATCAAAAGTTGGATATGACAGTGTGACATTAGTCATCATTCTATCTGCGATTGTAGGCACAAATAATTTGGAGGCGGGGAAGCAGATTCATGTTGCTGCTTTGAAATCAGGTCTTGATTCTGTTCTTTTGGTAGCCAATAGACTTATTAACATGTATTCAAAGGCTCGTTGTGTGCAGTTTGCGATAGAAGTATTCAATCACATGAAAGAGGTGGACCTTGTTTCATGGAACTCGATGATATCATGTTGTGCACAAAGCGGTTCAGGAGAGGAATCAGTAAACCTATTTATAGGTTTATTACGGGATGGTCTAAGACCTGATCAGTTCACAATTGCAAGTATTTTAAGGGCTTGCTCCTCTCTTCAAGAAGGGTTGCATCTCAGCAAACAGGTTCATGTACATGCAATTAAAACCGGTATTGCTGCTGACAGATTCGTTTCAACAGCTCTTGTTGATGTTTATTCTAGAAGTGGAAAGATGGAGGAGGCGGAGGCTCTATTGGAAAATAAAGTTAAATTCAATCTGGCTTCTTGGAATGCGTTGATGTTTGGGTACATAAAGAGTAATGACAGTCACAAAGCGCTACAACTTATGAGGAGGATTCATAATGGTGGAAACAGTGTAGACGAGATTACTTTGGCAACTGTTGCCAAGGCAACTAGTTGCCTGGTAGCATTGGTACCGGGGAAGCAAATTCATGCTCATATCATAAAGACAGGGTATTCAAAGGACTTGTACGTTAACAGCAGTATTCTAGATATGTACATAAAATGTGGAGACATGGGAAGTGCACACACAGTTTTCAATGACATTCCTTCACCGGATGATGTTGCGTGGACAACTCTTATCTCAGGGTGTTTAGAAAATGGAGATGAAGGGCGCTCCGTGTCTATATACCGTCAGATGAGGCAGTCAGGAGTTCCGCCCGATGAATACACCTTAGCTACCCTTGTCAAAGCCGCCTCTTGTCTGACAGCATTGGAACAAGGGAAACAGATACATGCAGATGCAATAAAGTTGGAATATTCCTCCGACCCTTATGTTGCGACATCACTTGTTGACATGTATGCCAAATGTGGTAACATAGAAGAGGCATATCGTTTATTCAGAAGGATGGATGTCGGAAGCATTGTCCTGTGGAATGCCATGTTGGTGGGTTTAGCTCAACATGGAGACGCTGAAGAAGCATTAAATCTTTTCAGAGTCATGAAATCTAGAAACATTGTGCCTGATAGAGTTACTTTCATTGGAGTTCTTTCTGCTTGCAGCCACTCTGGTTTAGTTTCCGAAGCTTATGAGCATTTTTCTTCAATGCAAAGAGATTACGACATTGAACCTGAGATTGAGCATTACTCTTGTCTAGTCGATGCCCTTGGTCGTGCAGGGCGTGTTCAAGAGGCAGAAAAGCTGATAGCATCTATGCCATTCGAAGCTTCTGCTTCAATGTACAGAGCCCTGCTTGGTGCTTGCAGGGTTCAAGGGGACACAGAAACTGGAAAACGAGTAGCAGAACAGCTCTTAGCTATCGAGCCATCTGACTCTTCGGCTTATGTTCTCATATCCAATATGAATGCTGCTGCCAACCAGTGGGATGCTGTGAACGATGCTCGACAAATGATGAAAGTGAACAATGTAAAGAAAGAACCAGGTTTCAGCTGGATAGATGTGAAGAACAAGATCCATTTGTTTGTAGTAGATGATAAATCTCATCCTGAAGCCGATTCGATATACGACAAGTTGGAGGACTTGATGAAATGGATCAGCGAAGAAGGGTATGTTCCTGATACAGAGTTTGTGCTTGCTGATGTTGAAGAAGAGGAAAAGGAGCGAGCTCTATATTACCATAGTGAGAGACTAGCCATAGCTTATGGACTCATAAGCACCCCTTCCTCTGCCATTATTCGGGTCATCAAGAACCTTAGAGTTTGTGGAGATTGCCATAATGCAATCAAGTACATATCAAAAGTTTCTCAAAGAGAAATTGTGGTGAGAGATGCAAATCGCTTCCATCGTTTCAAAAATGGAGGCTGCTCTTGTGGTGATTACTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1771 PAM2 PPR PPR_2 Smr

Protein Analysis

1022

Amino Acids

113.41

Weight (kDa)

6.44

Isoelectric Point (pI)

43.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 216 - 262 1.7e-07 PPR repeat family
PPR_2 PF13041 410 - 457 3.4e-06 PPR repeat family
PPR_2 PF13041 612 - 658 1.2e-08 PPR repeat family
PPR_2 PF13041 714 - 761 1.3e-10 PPR repeat family
PPR PF01535 716 - 746 2e-06 PPR repeat
E_motif PF20431 833 - 893 4.1e-15 E motif
Eplus_motif PF20430 898 - 923 1.1e-08 E+ motif
DYW_deaminase PF14432 929 - 1021 6.3e-44 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 273
Acc65I GGTACC 1 cut(s) 1693
AccB1I GGYRCC 1 cut(s) 1693
AccB7I CCANNNNNTGG 1 cut(s) 2601
AccBSI CCGCTC 1 cut(s) 741
AccI GTMKAC 1 cut(s) 1638
AccII CGCG 4 cut(s) 6, 8, 201, 368
AclWI GGATC 3 cut(s) 902, 2686, 2780
AcsI RAATTY 2 cut(s) 1529, 1707
AcuI CTGAAG 4 cut(s) 695, 719, 2214, 2748
AcyI GRCGYC 1 cut(s) 467
AfaI GTAC 7 cut(s) 1413, 1568, 1695, 1751, 1778, 2462, 2969
AfeI AGCGCT 2 cut(s) 711, 1596
AfiI CCNNNNNNNGG 3 cut(s) 282, 2601, 2916
AflIII ACRYGT 2 cut(s) 1164, 2076
AgeI ACCGGT 1 cut(s) 1427
AhlI ACTAGT 1 cut(s) 1673
AjnI CCWGG 6 cut(s) 69, 333, 341, 576, 1680, 2659
AjuI GAANNNNNNNTTGG 4 cut(s) 530, 562, 2147, 2179
Alw21I GWGCWC 3 cut(s) 1267, 1807, 2848
Alw26I GTCTC 4 cut(s) 324, 1785, 2181, 2860
Alw44I GTGCAC 2 cut(s) 1263, 1803
AlwI GGATC 3 cut(s) 902, 2686, 2780
AlwNI CAGNNNCTG 1 cut(s) 2507
Ama87I CYCGRG 1 cut(s) 618
Aor51HI AGCGCT 2 cut(s) 711, 1596
ApaLI GTGCAC 2 cut(s) 1263, 1803
ApoI RAATTY 2 cut(s) 1529, 1707
AsiGI ACCGGT 1 cut(s) 1427
Asp718I GGTACC 1 cut(s) 1693
AspLEI GCGC 9 cut(s) 6, 8, 10, 201, 203, 370, 712, 1597, 1896
AspS9I GGNCC 3 cut(s) 73, 749, 1228
AsuC2I CCSGG 2 cut(s) 226, 1698
AsuHPI GGTGA 9 cut(s) 256, 331, 439, 547, 592, 983, 1824, 3013, 3065
AsuII TTCGAA 2 cut(s) 101, 2442
AvaI CYCGRG 1 cut(s) 618
AvaII GGWCC 3 cut(s) 73, 749, 1228
BaeGI GKGCMC 2 cut(s) 1267, 1807
BanI GGYRCC 1 cut(s) 1693
BanII GRGCYC 2 cut(s) 2470, 2848
BbsI GAAGAC 1 cut(s) 129
Bbv12I GWGCWC 3 cut(s) 1267, 1807, 2848
BccI CCATC 7 cut(s) 626, 631, 1313, 1486, 2122, 2554, 3030
BceAI ACGGC 1 cut(s) 971
BcgI CGANNNNNNTGC 6 cut(s) 271, 305, 359, 393, 2432, 2466
BciT130I CCWGG 6 cut(s) 71, 335, 343, 578, 1682, 2661
BclI TGATCA 1 cut(s) 1333
BcnI CCSGG 2 cut(s) 226, 1698
BcoDI GTCTC 4 cut(s) 324, 1785, 2181, 2860
BcuI ACTAGT 1 cut(s) 1673
BfaI CTAG 6 cut(s) 1479, 1674, 1769, 2229, 2375, 2870
BfoI RGCGCY 3 cut(s) 713, 1598, 1897
BfuAI ACCTGC 1 cut(s) 273
Bme1390I CCNGG 8 cut(s) 71, 226, 335, 343, 578, 1682, 1698, 2661
Bme18I GGWCC 3 cut(s) 73, 749, 1228
BmeT110I CYCGRG 1 cut(s) 618
BmgT120I GGNCC 3 cut(s) 73, 749, 1228
BmiI GGNNCC 2 cut(s) 75, 1695
BmrFI CCNGG 8 cut(s) 71, 226, 335, 343, 578, 1682, 1698, 2661
BmsI GCATC 7 cut(s) 1399, 2011, 2371, 2438, 2596, 2608, 2998
BoxI GACNNNNGTC 1 cut(s) 1043
BpiI GAAGAC 1 cut(s) 129
BplI GAGNNNNNCTC 2 cut(s) 2351, 2383
Bpu10I CCTNAGC 3 cut(s) 324, 599, 1954
Bpu14I TTCGAA 2 cut(s) 101, 2442
BpuEI CTTGAG 1 cut(s) 384
BpuMI CCSGG 2 cut(s) 226, 1698
BsaBI GATNNNNATC 1 cut(s) 3012
BsaHI GRCGYC 1 cut(s) 467
BsaI GGTCTC 1 cut(s) 324
BsaJI CCNNGG 8 cut(s) 69, 143, 190, 513, 924, 1665, 1697, 2386
BsaWI WCCGGW 2 cut(s) 1427, 1834
Bsc4I CCNNNNNNNGG 3 cut(s) 282, 2601, 2916
Bse118I RCCGGY 1 cut(s) 1427
Bse1I ACTGG 3 cut(s) 2512, 2599, 3065
Bse3DI GCAATG 2 cut(s) 168, 236
Bse8I GATNNNNATC 1 cut(s) 3012
BseBI CCWGG 6 cut(s) 71, 335, 343, 578, 1682, 2661
BseDI CCNNGG 8 cut(s) 69, 143, 190, 513, 924, 1665, 1697, 2386
BseJI GATNNNNATC 1 cut(s) 3012
BseLI CCNNNNNNNGG 3 cut(s) 282, 2601, 2916
BseMI GCAATG 2 cut(s) 168, 236
BseMII CTCAG 6 cut(s) 315, 613, 717, 1408, 1878, 2343
BseNI ACTGG 3 cut(s) 2512, 2599, 3065
BsePI GCGCGC 3 cut(s) 4, 6, 199
BseRI GAGGAG 6 cut(s) 82, 118, 842, 1360, 1511, 1624
BseSI GKGCMC 2 cut(s) 1267, 1807
BseYI CCCAGC 1 cut(s) 853
BsgI GTGCAG 2 cut(s) 1208, 2415
Bsh1236I CGCG 4 cut(s) 6, 8, 201, 368
BshNI GGYRCC 1 cut(s) 1693
BshTI ACCGGT 1 cut(s) 1427
BsiHKAI GWGCWC 3 cut(s) 1267, 1807, 2848
BsiHKCI CYCGRG 1 cut(s) 618
BsiSI CCGG 4 cut(s) 225, 1428, 1697, 1835
BslFI GGGAC 3 cut(s) 59, 708, 2510
BslI CCNNNNNNNGG 3 cut(s) 282, 2601, 2916
BsmAI GTCTC 4 cut(s) 324, 1785, 2181, 2860
BsmBI CGTCTC 1 cut(s) 2181
BsmFI GGGAC 3 cut(s) 59, 708, 2510
BsmI GAATGC 3 cut(s) 1555, 2161, 2590
Bso31I GGTCTC 1 cut(s) 324
BsoBI CYCGRG 1 cut(s) 618
Bsp119I TTCGAA 2 cut(s) 101, 2442
Bsp1286I GDGCHC 4 cut(s) 1267, 1807, 2470, 2848
Bsp1407I TGTACA 3 cut(s) 1411, 1776, 2460
Bsp143I GATC 6 cut(s) 238, 907, 1013, 1333, 2691, 2772
Bsp19I CCATGG 1 cut(s) 143
BspCNI CTCAG 6 cut(s) 316, 612, 718, 1407, 1877, 2344
BspFNI CGCG 4 cut(s) 6, 8, 201, 368
BspHI TCATGA 1 cut(s) 2220
BspLI GGNNCC 2 cut(s) 75, 1695
BspMI ACCTGC 1 cut(s) 273
BspPI GGATC 3 cut(s) 902, 2686, 2780
BspT104I TTCGAA 2 cut(s) 101, 2442
BspT107I GGYRCC 1 cut(s) 1693
BspTNI GGTCTC 1 cut(s) 324
BsrBI CCGCTC 1 cut(s) 741
BsrDI GCAATG 2 cut(s) 168, 236
BsrFI RCCGGY 1 cut(s) 1427
BsrGI TGTACA 3 cut(s) 1411, 1776, 2460
BsrI ACTGG 3 cut(s) 2512, 2599, 3065
BssAI RCCGGY 1 cut(s) 1427
BssECI CCNNGG 8 cut(s) 69, 143, 190, 513, 924, 1665, 1697, 2386
BssHII GCGCGC 3 cut(s) 4, 6, 199
BssMI GATC 6 cut(s) 238, 907, 1013, 1333, 2691, 2772
BssNI GRCGYC 1 cut(s) 467
BssT1I CCWWGG 3 cut(s) 143, 1665, 2386
Bst2UI CCWGG 6 cut(s) 71, 335, 343, 578, 1682, 2661
Bst4CI ACNGT 7 cut(s) 758, 1034, 1586, 1634, 1660, 1813, 1913
Bst6I CTCTTC 6 cut(s) 50, 136, 1380, 2097, 2560, 2823
BstACI GRCGYC 1 cut(s) 467
BstAPI GCANNNNNTGC 1 cut(s) 1661
BstAUI TGTACA 3 cut(s) 1411, 1776, 2460
BstBI TTCGAA 2 cut(s) 101, 2442
BstDSI CCRYGG 1 cut(s) 143
BstEII GGTNACC 1 cut(s) 337
BstFNI CGCG 4 cut(s) 6, 8, 201, 368
BstH2I RGCGCY 3 cut(s) 713, 1598, 1897
BstHHI GCGC 9 cut(s) 6, 8, 10, 201, 203, 370, 712, 1597, 1896
BstKTI GATC 6 cut(s) 241, 910, 1016, 1336, 2694, 2775
BstMAI GTCTC 4 cut(s) 324, 1785, 2181, 2860
BstMBI GATC 6 cut(s) 238, 907, 1013, 1333, 2691, 2772
BstMWI GCNNNNNNNGC 7 cut(s) 10, 356, 365, 404, 845, 1661, 2198
BstNI CCWGG 6 cut(s) 71, 335, 343, 578, 1682, 2661
BstNSI RCATGY 4 cut(s) 1168, 1418, 2018, 2080
BstPAI GACNNNNGTC 1 cut(s) 1043
BstPI GGTNACC 1 cut(s) 337
BstSCI CCNGG 8 cut(s) 69, 224, 333, 341, 576, 1680, 1696, 2659
BstSLI GKGCMC 2 cut(s) 1267, 1807
BstUI CGCG 4 cut(s) 6, 8, 201, 368
BstV2I GAAGAC 1 cut(s) 129
BstX2I RGATCY 1 cut(s) 2691
BstXI CCANNNNNNTGG 1 cut(s) 2167
BstYI RGATCY 1 cut(s) 2691
BtgI CCRYGG 1 cut(s) 143
BtsIMutI CAGTG 4 cut(s) 763, 1039, 1639, 2606
BveI ACCTGC 1 cut(s) 273
CaiI CAGNNNCTG 1 cut(s) 2507
CciI TCATGA 1 cut(s) 2220
CfoI GCGC 9 cut(s) 6, 8, 10, 201, 203, 370, 712, 1597, 1896
Cfr10I RCCGGY 1 cut(s) 1427
Cfr13I GGNCC 3 cut(s) 73, 749, 1228
CseI GACGC 2 cut(s) 456, 2198
CsiI ACCWGGT 3 cut(s) 333, 576, 2659
Csp6I GTAC 7 cut(s) 1412, 1567, 1694, 1750, 1777, 2461, 2968
CspAI ACCGGT 1 cut(s) 1427
CviQI GTAC 7 cut(s) 1412, 1567, 1694, 1750, 1777, 2461, 2968
DpnI GATC 6 cut(s) 240, 909, 1015, 1335, 2693, 2774
DpnII GATC 6 cut(s) 238, 907, 1013, 1333, 2691, 2772
Eam1104I CTCTTC 6 cut(s) 50, 136, 1380, 2097, 2560, 2823
EarI CTCTTC 6 cut(s) 50, 136, 1380, 2097, 2560, 2823
EciI GGCGGA 2 cut(s) 1517, 1926
Ecl136II GAGCTC 1 cut(s) 2846
Eco130I CCWWGG 3 cut(s) 143, 1665, 2386
Eco24I GRGCYC 2 cut(s) 2470, 2848
Eco31I GGTCTC 1 cut(s) 324
Eco32I GATATC 1 cut(s) 1254
Eco47I GGWCC 3 cut(s) 73, 749, 1228
Eco47III AGCGCT 2 cut(s) 711, 1596
Eco53kI GAGCTC 1 cut(s) 2846
Eco57I CTGAAG 4 cut(s) 695, 719, 2214, 2748
Eco88I CYCGRG 1 cut(s) 618
Eco91I GGTNACC 1 cut(s) 337
EcoICRI GAGCTC 1 cut(s) 2846
EcoO109I RGGNCCY 1 cut(s) 749
EcoO65I GGTNACC 1 cut(s) 337
EcoRII CCWGG 6 cut(s) 69, 333, 341, 576, 1680, 2659
EcoRV GATATC 1 cut(s) 1254
EcoT14I CCWWGG 3 cut(s) 143, 1665, 2386
EcoT38I GRGCYC 2 cut(s) 2470, 2848
ErhI CCWWGG 3 cut(s) 143, 1665, 2386
Esp3I CGTCTC 1 cut(s) 2181
FalI AAGNNNNNCTT 4 cut(s) 393, 425, 2884, 2916
FaqI GGGAC 3 cut(s) 59, 708, 2510
FauI CCCGC 2 cut(s) 446, 1081
FauNDI CATATG 3 cut(s) 295, 682, 841
FbaI TGATCA 1 cut(s) 1333
FblI GTMKAC 1 cut(s) 1638
FriOI GRGCYC 2 cut(s) 2470, 2848
FspBI CTAG 6 cut(s) 1479, 1674, 1769, 2229, 2375, 2870
GlaI GCGC 9 cut(s) 5, 7, 9, 200, 202, 369, 711, 1596, 1895
GsaI CCCAGC 1 cut(s) 857
HaeII RGCGCY 3 cut(s) 713, 1598, 1897
HapII CCGG 4 cut(s) 225, 1428, 1697, 1835
HgaI GACGC 2 cut(s) 456, 2198
HhaI GCGC 9 cut(s) 6, 8, 10, 201, 203, 370, 712, 1597, 1896
Hin1I GRCGYC 1 cut(s) 467
Hin6I GCGC 9 cut(s) 4, 6, 8, 199, 201, 368, 710, 1595, 1894
HinP1I GCGC 9 cut(s) 4, 6, 8, 199, 201, 368, 710, 1595, 1894
HincII GTYRAC 2 cut(s) 1756, 2074
HindII GTYRAC 2 cut(s) 1756, 2074
HindIII AAGCTT 2 cut(s) 2304, 2445
HpaI GTTAAC 1 cut(s) 1756
HpaII CCGG 4 cut(s) 225, 1428, 1697, 1835
HphI GGTGA 9 cut(s) 256, 331, 439, 547, 592, 983, 1824, 3013, 3065
Hpy99I CGWCG 1 cut(s) 472
HpyCH4III ACNGT 7 cut(s) 758, 1034, 1586, 1634, 1660, 1813, 1913
HpyCH4IV ACGT 2 cut(s) 947, 1752
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 356, 365, 404, 845, 1661, 2198
HpySE526I ACGT 2 cut(s) 947, 1752
Hsp92I GRCGYC 1 cut(s) 467
HspAI GCGC 9 cut(s) 4, 6, 8, 199, 201, 368, 710, 1595, 1894
KpnI GGTACC 1 cut(s) 1697
Ksp22I TGATCA 1 cut(s) 1333
KspAI GTTAAC 1 cut(s) 1756
Kzo9I GATC 6 cut(s) 238, 907, 1013, 1333, 2691, 2772
LmnI GCTCC 4 cut(s) 738, 1373, 1901, 2839
LweI GCATC 7 cut(s) 1399, 2011, 2371, 2438, 2596, 2608, 2998
MabI ACCWGGT 3 cut(s) 333, 576, 2659
MaeI CTAG 6 cut(s) 1479, 1674, 1769, 2229, 2375, 2870
MaeII ACGT 2 cut(s) 947, 1752
MaeIII GTNAC 6 cut(s) 337, 865, 1036, 1586, 2093, 2251
MalI GATC 6 cut(s) 240, 909, 1015, 1335, 2693, 2774
MbiI CCGCTC 1 cut(s) 741
MboI GATC 6 cut(s) 238, 907, 1013, 1333, 2691, 2772
MfeI CAATTG 1 cut(s) 1344
MflI RGATCY 1 cut(s) 2691
MhlI GDGCHC 4 cut(s) 1267, 1807, 2470, 2848
MluCI AATT 8 cut(s) 39, 976, 1078, 1344, 1419, 1529, 1707, 2994
MlyI GAGTC 4 cut(s) 443, 2226, 2546, 2880
MmeI TCCRAC 7 cut(s) 52, 528, 1003, 2013, 2070, 2116, 2733
MseI TTAA 7 cut(s) 609, 1161, 1358, 1422, 1527, 1755, 2204
MslI CAYNNNNRTG 6 cut(s) 266, 528, 1413, 1623, 2019, 2165
MspA1I CMGCKG 3 cut(s) 13, 453, 2670
MspI CCGG 4 cut(s) 225, 1428, 1697, 1835
MspR9I CCNGG 8 cut(s) 71, 226, 335, 343, 578, 1682, 1698, 2661
MunI CAATTG 1 cut(s) 1344
Mva1269I GAATGC 3 cut(s) 1555, 2161, 2590
MvaI CCWGG 6 cut(s) 71, 335, 343, 578, 1682, 2661
MvnI CGCG 4 cut(s) 6, 8, 201, 368
MwoI GCNNNNNNNGC 7 cut(s) 10, 356, 365, 404, 845, 1661, 2198
NciI CCSGG 2 cut(s) 226, 1698
NcoI CCATGG 1 cut(s) 143
NdeI CATATG 3 cut(s) 295, 682, 841
NdeII GATC 6 cut(s) 238, 907, 1013, 1333, 2691, 2772
NlaIV GGNNCC 2 cut(s) 75, 1695
NmeAIII GCCGAG 1 cut(s) 171
NmuCI GTSAC 3 cut(s) 337, 1036, 1586
NspI RCATGY 4 cut(s) 1168, 1418, 2018, 2080
NspV TTCGAA 2 cut(s) 101, 2442
PagI TCATGA 1 cut(s) 2220
PauI GCGCGC 3 cut(s) 4, 6, 199
PciI ACATGT 2 cut(s) 1164, 2076
PcsI WCGNNNNNNNCGW 3 cut(s) 427, 2398, 3022
PctI GAATGC 3 cut(s) 1555, 2161, 2590
PfeI GAWTC 9 cut(s) 787, 800, 920, 1099, 1130, 1286, 1446, 1615, 2735
PflFI GACNNNGTC 2 cut(s) 335, 949
PflMI CCANNNNNTGG 1 cut(s) 2601
PinAI ACCGGT 1 cut(s) 1427
PleI GAGTC 4 cut(s) 442, 2225, 2546, 2880
PpsI GAGTC 4 cut(s) 442, 2225, 2546, 2880
PpuMI RGGWCCY 1 cut(s) 749
PscI ACATGT 2 cut(s) 1164, 2076
PshAI GACNNNNGTC 1 cut(s) 1043
Psp124BI GAGCTC 1 cut(s) 2848
Psp5II RGGWCCY 1 cut(s) 749
Psp6I CCWGG 6 cut(s) 69, 333, 341, 576, 1680, 2659
PspEI GGTNACC 1 cut(s) 337
PspFI CCCAGC 1 cut(s) 853
PspGI CCWGG 6 cut(s) 69, 333, 341, 576, 1680, 2659
PspN4I GGNNCC 2 cut(s) 75, 1695
PspPI GGNCC 3 cut(s) 73, 749, 1228
PspPPI RGGWCCY 1 cut(s) 749
PstNI CAGNNNCTG 1 cut(s) 2507
PsuI RGATCY 1 cut(s) 2691
PsyI GACNNNGTC 2 cut(s) 335, 949
PteI GCGCGC 3 cut(s) 4, 6, 199
PvuII CAGCTG 2 cut(s) 13, 2670
RsaI GTAC 7 cut(s) 1413, 1568, 1695, 1751, 1778, 2462, 2969
RsaNI GTAC 7 cut(s) 1412, 1567, 1694, 1750, 1777, 2461, 2968
RseI CAYNNNNRTG 6 cut(s) 266, 528, 1413, 1623, 2019, 2165
SacI GAGCTC 1 cut(s) 2848
SaqAI TTAA 7 cut(s) 609, 1161, 1358, 1422, 1527, 1755, 2204
Sau3AI GATC 6 cut(s) 238, 907, 1013, 1333, 2691, 2772
Sau96I GGNCC 3 cut(s) 73, 749, 1228
SchI GAGTC 4 cut(s) 443, 2226, 2546, 2880
ScrFI CCNGG 8 cut(s) 71, 226, 335, 343, 578, 1682, 1698, 2661
SduI GDGCHC 4 cut(s) 1267, 1807, 2470, 2848
SexAI ACCWGGT 3 cut(s) 333, 576, 2659
SfaNI GCATC 7 cut(s) 1399, 2011, 2371, 2438, 2596, 2608, 2998
SfuI TTCGAA 2 cut(s) 101, 2442
SinI GGWCC 3 cut(s) 73, 749, 1228
SmiMI CAYNNNNRTG 6 cut(s) 266, 528, 1413, 1623, 2019, 2165
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
SpeI ACTAGT 1 cut(s) 1673
Sse9I AATT 8 cut(s) 39, 976, 1078, 1344, 1419, 1529, 1707, 2994
SspI AATATT 1 cut(s) 2039
SspMI CTAG 6 cut(s) 1479, 1674, 1769, 2229, 2375, 2870
SstI GAGCTC 1 cut(s) 2848
StyD4I CCNGG 8 cut(s) 69, 224, 333, 341, 576, 1680, 1696, 2659
StyI CCWWGG 3 cut(s) 143, 1665, 2386
TaaI ACNGT 7 cut(s) 758, 1034, 1586, 1634, 1660, 1813, 1913
TaiI ACGT 2 cut(s) 950, 1755
TaqI TCGA 9 cut(s) 101, 119, 312, 1247, 2379, 2442, 2541, 2623, 2738
TasI AATT 8 cut(s) 39, 976, 1078, 1344, 1419, 1529, 1707, 2994
TatI WGTACW 4 cut(s) 1411, 1776, 2460, 2967
TauI GCSGC 2 cut(s) 427, 1976
TfiI GAWTC 9 cut(s) 787, 800, 920, 1099, 1130, 1286, 1446, 1615, 2735
Tru1I TTAA 7 cut(s) 609, 1161, 1358, 1422, 1527, 1755, 2204
Tru9I TTAA 7 cut(s) 609, 1161, 1358, 1422, 1527, 1755, 2204
TscAI CASTG 4 cut(s) 763, 1039, 1639, 2606
TseFI GTSAC 3 cut(s) 337, 1036, 1586
Tsp45I GTSAC 3 cut(s) 337, 1036, 1586
TspGWI ACGGA 1 cut(s) 1888
TspRI CASTG 4 cut(s) 763, 1039, 1639, 2606
Tth111I GACNNNGTC 2 cut(s) 335, 949
Van91I CCANNNNNTGG 1 cut(s) 2601
VneI GTGCAC 2 cut(s) 1263, 1803
VpaK11BI GGWCC 3 cut(s) 73, 749, 1228
XapI RAATTY 2 cut(s) 1529, 1707
XbaI TCTAGA 3 cut(s) 1478, 1768, 2228
XceI RCATGY 4 cut(s) 1168, 1418, 2018, 2080
XcmI CCANNNNNNNNNTGG 1 cut(s) 2667
XmiI GTMKAC 1 cut(s) 1638
XspI CTAG 6 cut(s) 1479, 1674, 1769, 2229, 2375, 2870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.