RLG00000010356

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0007813
Physical Location & Seq
Reverse (-)
944133 .. 947195
3063 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010356

Sequence Viewer

Length: 3063 bp
ATGCAGTTGCAAACCAATCTCCGACCCAAATCAATTTTCTTCTCCACCAAAAACCCAAAAACCCTTCTCCCTCTCTTCAATTTCTCATCTCTCTCCAACCCCATCTCTCACTCTACCCATCCCTCTTCTTCATCTTCTCCATGGTTCCCTATCCTCCGCTCCGCCATTGCCAATTCAGACTTGCCCCTCGGCAAGCGCGCCCACGCCCTTATGTTAACCTCAGGGGAATGCCAAGACCATTTTCTAATCAACAATCTCATCACTATGTATTCGAAATGCAGGTCACTCACATATGCACGCCACCTGTTCGATAAAAGTCCTGAGCGAGACCTGGTCACCTGGAATGCCATTCTAGCAGCCTATGCGCAAGCTGGGGGCTCTGTGGTTGAGAATGTTCAAGAGGGGCTTGGCCTTTTCCGGCGGCTTCGTGAGTCTGTTGTGTTCACCAGTCGGCACACTTTGGCTTCCGTTTTGAAGCTGTGTTTGCTGTCCGGGCGTGTTTGGATTTCGGAGGCTGTTCATGGGTACGCTGTGAAAATTGGGTTGGAGTGGGATGTGTTTGTTTCGGGTACCCTGGTGAATGTGTATTGTAAACTCAGAAGAGTTAAGGAGGCTCGGGCTTTGTTTGATGGGATGCTGGAAAGGGATGTTGTGTTGTGGAACACAATGCTGAAGGCATATGTGGAAATGGGTCTTCATGAAGAAGCACTTGCTCTTTTCTCTAAGTTTCATCGGAGTGGATTGGGTCCTGATGATGTCAGTGTGCGTTGTGTTCTTAGTGGGATTCACAAAGTTGATTATGATGAAGGCAAGAGGCACATGGAGGAGGTTCGAGCATATGCAGCAAAGCTGGGGGAGTTTATAAGTAATGTGGATGATGATGCCCATCCACCAAGCTTATGTGTTCCCACTACTAATTCCGACATATTTTTGTGGAACAAGACATTGTCTAAGTATATCCGAGCCGGTGAAAATTGGGCGGCGATAGAGTGCTTTAGAAATATGATTAGATCAAAAGTTGGATATGACAGTGTGACATTAGTTATTATTCTATCTGTGATTGTAGGCACAAATAATTTGGAGGTGGGGAAACAGATTCATGGTGCTGCTTTGAAATCAGATTTTGGTTCTGTTCTTTTGGTAGCAAATAGCCTTATCAACACGTATTCAAAGGCTCGCTGTGTTCACTTTGCGAGAGAAGTATTCAATCACATGAAAGAAGTGGACATTGTTTCGTGGAACTCGATGATATCATGTTATGCTCAAAGCGGTTCAGGAGAGGAATCAATAAATCTATTTATAGGTTTATTACGGGATGGTCTAAGACCTGATCAATTTACAATTGCAAGTATTTTAAGGGCTTGCTCCTCTCTTCAAGAAGGGTTGCATTTCAGTGAACAGGTTCATGTTCATGCAATAAAGAACGGTATTGCTGCTGACAGATTTGTTTCAACAGCTCTTATTGATGTTTATTCTAGAAGTGGAAAGATGGACGAGGCGGAGGCCCTTTTAGATAACAAAGTTAAATTCGATCTGGCATCTTGGAATGCGTTGATGTTTGGGTACATAAAGGGTAATGACAGTCACAAAGCACTACAACTTATGAGGATGATTCATGAAGGTGGAAAGAGAGTAGATGAGATTACTTTGGCAACTGTTGCTAAGGCCACTAGTTGCCTGGTAGCGTTGGTACCGGGGAAGCAAATTCATGCTCATGTCATAAAAACAGGGTATTCAAAGGACTTATATGTTAACAGCAGTATTCTAGATATGTACATAAAATGTGGAGACATGAAAAGTGCACATACAGTTTTCAATGACATTCCTGCACCTGATGATGTTGCGTGGACAACTCTAATCTCAGGATGTTTAGAAAATGGAGATGAAGGGCGCTCTGTGTCTATATACCATCAGATGAGGCAGTCAGGAGTTCAGCCTGATGAATACACCTTAGCTACCCTTGTCAAAGCCGCCTCTTGTCTGACAGCATTGGAACAAGGGAAACAGATACATGCAGATGCAATAAAGTTGGAATATTCCTCAGACCCTTATGTTGCGACATCACTTGTTGACATGTATGCCAAGTGCGGTAACATAGAAGGTGCATATCGTTTATTCAGAAGGATGGATGTTGGGAGCATTGTCCTGTGGAATGCCATGTTGGTGGGTTTAGCTCAACATGGAGACGCTGAAGAAGCACTAAATCTTTTCAGAGTCATGAAATCTAATAACATTTTGCCTGATAGAGTTACTTTCATTGGAGTTCTTTCTGCTTGCAGCCACTCTGGTTTAGTTTCTGAAGCTTACGAGCATTTTTCTTCAATGCAAAGAGATTACGGCATTGAACCAGAGATCGAGCACTACTCTTGTCTAGTCGATGCCCTTGGCCGTGCAGGGCGTGTTCAAGAGGCAGAAAAGCTGATAGCATCAATGCCATTTGAAGCTTCTGCTTCAATGTACAGAGCCCTGCTTGGTGCTTGCAGGGTTCAAGGGGACACAGAAGCTGGAAAACGAGTAGCAGAACAGCTCTTGGCTATTGAGCCAACTGACTCATCCGCGTATGTTCTCATATCCAATATGAATGCTGCTGCCAACCAGTGGGATGCTGTGAACGATGCTCGTCAAATGATGAAACAGAAGAATGTAAAGAAAGAACCAGGTTTCAGTTGGATAGATGTGAAGAACAAGGTCCATTTGTTTGTAGTAGATGACAAATCCCATCCTGAAGCCAATTTGATATACAACAAGTTGGAGGACTTGATGAAACGGATCGGTGAAGAAGGGTATGTCCCTGACACAGAGTTTGTGCTTGCTGATGTTGATGAAGAGGAAAAAGAGCGAGCCCTATATTACCATAGTGAGAGGCTAGCAATAGCTTATGGACTGATAAGCACTCCCTCATCTGCCATTATTCGGGTCATTAAGAACCTTAGAGTTTGTGGAGACTGCCATAATGCAATCAAATACATATCAAAGGTTTCTCAAAGAGAAATTGTGGTGAGAGATGCAAATCGCTTCCATCGTTTCAGAAATGGGAGCTGCTCCTGTGGTGATTACTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1771 PAM2 PPR PPR_2 Smr

Protein Analysis

1021

Amino Acids

113.54

Weight (kDa)

6.58

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 215 - 262 3.8e-08 PPR repeat family
PPR_2 PF13041 409 - 456 2.1e-07 PPR repeat family
PPR_2 PF13041 611 - 657 5.7e-09 PPR repeat family
PPR_2 PF13041 713 - 760 3.3e-10 PPR repeat family
PPR PF01535 715 - 745 2.6e-06 PPR repeat
E_motif PF20431 832 - 892 6.4e-16 E motif
Eplus_motif PF20430 897 - 924 1.7e-08 E+ motif
DYW_deaminase PF14432 928 - 1020 2.4e-44 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 863
Acc16I TGCGCA 1 cut(s) 366
Acc36I ACCTGC 1 cut(s) 270
Acc65I GGTACC 2 cut(s) 569, 1690
AccB1I GGYRCC 2 cut(s) 569, 1690
AccB7I CCANNNNNTGG 1 cut(s) 2598
AccBSI CCGCTC 1 cut(s) 159
AccII CGCG 2 cut(s) 198, 2558
AciI CCGC 9 cut(s) 157, 162, 421, 980, 1269, 1499, 1971, 2088, 2556
AclWI GGATC 1 cut(s) 2777
AcoI YGGCCR 1 cut(s) 2386
AcsI RAATTY 2 cut(s) 1526, 1704
AcuI CTGAAG 4 cut(s) 692, 2211, 2319, 2745
AfaI GTAC 6 cut(s) 527, 571, 1565, 1692, 1775, 2459
AfiI CCNNNNNNNGG 2 cut(s) 2598, 2913
AflIII ACRYGT 2 cut(s) 1161, 2073
AhlI ACTAGT 1 cut(s) 1670
AjnI CCWGG 5 cut(s) 330, 338, 573, 1677, 2656
AjuI GAANNNNNNNTTGG 8 cut(s) 20, 52, 225, 257, 527, 559, 2144, 2176
Alw21I GWGCWC 2 cut(s) 1804, 2361
Alw26I GTCTC 4 cut(s) 321, 1782, 2178, 2937
Alw44I GTGCAC 1 cut(s) 1800
AlwI GGATC 1 cut(s) 2777
AlwNI CAGNNNCTG 1 cut(s) 2504
Ama87I CYCGRG 1 cut(s) 615
AoxI GGCC 4 cut(s) 409, 1503, 1665, 2386
ApaLI GTGCAC 1 cut(s) 1800
ApeKI GCWGC 8 cut(s) 356, 842, 1106, 1433, 2277, 2585, 2588, 3039
ApoI RAATTY 2 cut(s) 1526, 1704
ArsI GACNNNNNNTTYG 4 cut(s) 266, 298, 2786, 2818
Asp700I GAANNNNTTC 1 cut(s) 1401
Asp718I GGTACC 2 cut(s) 569, 1690
AspLEI GCGC 4 cut(s) 198, 200, 367, 1893
AspS9I GGNCC 3 cut(s) 746, 1504, 2689
AsuC2I CCSGG 2 cut(s) 493, 1695
AsuHPI GGTGA 7 cut(s) 328, 436, 589, 980, 2786, 3010, 3062
AsuII TTCGAA 1 cut(s) 272
AsuNHI GCTAGC 1 cut(s) 2866
AvaI CYCGRG 1 cut(s) 615
AvaII GGWCC 2 cut(s) 746, 2689
AxyI CCTNAGG 1 cut(s) 220
BaeGI GKGCMC 1 cut(s) 1804
BaeI ACNNNNGTAYC 2 cut(s) 561, 594
BanI GGYRCC 2 cut(s) 569, 1690
BanII GRGCYC 3 cut(s) 380, 2467, 2845
BbsI GAAGAC 1 cut(s) 686
Bbv12I GWGCWC 2 cut(s) 1804, 2361
BbvI GCAGC 8 cut(s) 368, 854, 1093, 1420, 2289, 2572, 2575, 3026
BceAI ACGGC 2 cut(s) 2353, 2373
BciT130I CCWGG 5 cut(s) 332, 340, 575, 1679, 2658
BclI TGATCA 1 cut(s) 1330
BcnI CCSGG 2 cut(s) 493, 1695
BcoDI GTCTC 4 cut(s) 321, 1782, 2178, 2937
BcuI ACTAGT 1 cut(s) 1670
BfaI CTAG 6 cut(s) 353, 1476, 1671, 1766, 2372, 2867
BfoI RGCGCY 1 cut(s) 1894
BfuAI ACCTGC 1 cut(s) 270
Bme1390I CCNGG 7 cut(s) 332, 340, 493, 575, 1679, 1695, 2658
Bme18I GGWCC 2 cut(s) 746, 2689
BmeT110I CYCGRG 1 cut(s) 615
BmgT120I GGNCC 3 cut(s) 746, 1504, 2689
BmiI GGNNCC 4 cut(s) 146, 571, 747, 1692
BmrFI CCNGG 7 cut(s) 332, 340, 493, 575, 1679, 1695, 2658
BmsI GCATC 9 cut(s) 624, 871, 1547, 2008, 2368, 2435, 2593, 2605, 2995
BmtI GCTAGC 1 cut(s) 2870
BpiI GAAGAC 1 cut(s) 686
BplI GAGNNNNNCTC 2 cut(s) 2348, 2380
Bpu10I CCTNAGC 3 cut(s) 321, 1662, 1951
Bpu14I TTCGAA 1 cut(s) 272
BpuMI CCSGG 2 cut(s) 493, 1695
BsaAI YACGTR 1 cut(s) 1164
BsaBI GATNNNNATC 2 cut(s) 885, 3009
BsaI GGTCTC 1 cut(s) 321
BsaJI CCNNGG 5 cut(s) 140, 187, 573, 1694, 2383
Bsc4I CCNNNNNNNGG 2 cut(s) 2598, 2913
Bse118I RCCGGY 1 cut(s) 965
Bse1I ACTGG 3 cut(s) 447, 2596, 3062
Bse21I CCTNAGG 1 cut(s) 220
Bse3DI GCAATG 1 cut(s) 165
Bse8I GATNNNNATC 2 cut(s) 885, 3009
BseBI CCWGG 5 cut(s) 332, 340, 575, 1679, 2658
BseDI CCNNGG 5 cut(s) 140, 187, 573, 1694, 2383
BseJI GATNNNNATC 2 cut(s) 885, 3009
BseLI CCNNNNNNNGG 2 cut(s) 2598, 2913
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 5 cut(s) 234, 312, 610, 1875, 2055
BseNI ACTGG 3 cut(s) 447, 2596, 3062
BsePI GCGCGC 1 cut(s) 196
BseRI GAGGAG 2 cut(s) 839, 1357
BseSI GKGCMC 1 cut(s) 1804
BseXI GCAGC 8 cut(s) 368, 854, 1093, 1420, 2289, 2572, 2575, 3026
BseYI CCCAGC 2 cut(s) 371, 850
BsgI GTGCAG 2 cut(s) 1812, 2412
Bsh1236I CGCG 2 cut(s) 198, 2558
BshFI GGCC 4 cut(s) 411, 1505, 1667, 2388
BshNI GGYRCC 2 cut(s) 569, 1690
BsiHKAI GWGCWC 2 cut(s) 1804, 2361
BsiHKCI CYCGRG 1 cut(s) 615
BsiSI CCGG 4 cut(s) 418, 492, 966, 1694
BslFI GGGAC 2 cut(s) 2507, 2774
BslI CCNNNNNNNGG 2 cut(s) 2598, 2913
BsmAI GTCTC 4 cut(s) 321, 1782, 2178, 2937
BsmBI CGTCTC 1 cut(s) 2178
BsmFI GGGAC 2 cut(s) 2507, 2774
BsmI GAATGC 5 cut(s) 233, 349, 1552, 2158, 2587
BsnI GGCC 4 cut(s) 411, 1505, 1667, 2388
Bso31I GGTCTC 1 cut(s) 321
BsoBI CYCGRG 1 cut(s) 615
Bsp119I TTCGAA 1 cut(s) 272
Bsp1286I GDGCHC 5 cut(s) 380, 1804, 2361, 2467, 2845
Bsp1407I TGTACA 2 cut(s) 1773, 2457
Bsp143I GATC 5 cut(s) 1010, 1330, 1531, 2352, 2769
Bsp19I CCATGG 1 cut(s) 140
BspACI CCGC 9 cut(s) 157, 162, 421, 980, 1269, 1499, 1971, 2088, 2556
BspANI GGCC 4 cut(s) 411, 1505, 1667, 2388
BspCNI CTCAG 5 cut(s) 233, 313, 609, 1874, 2054
BspFNI CGCG 2 cut(s) 198, 2558
BspHI TCATGA 3 cut(s) 697, 1615, 2217
BspLI GGNNCC 4 cut(s) 146, 571, 747, 1692
BspMI ACCTGC 1 cut(s) 270
BspOI GCTAGC 1 cut(s) 2870
BspPI GGATC 1 cut(s) 2777
BspT104I TTCGAA 1 cut(s) 272
BspT107I GGYRCC 2 cut(s) 569, 1690
BspTNI GGTCTC 1 cut(s) 321
BsrBI CCGCTC 1 cut(s) 159
BsrDI GCAATG 1 cut(s) 165
BsrFI RCCGGY 1 cut(s) 965
BsrGI TGTACA 2 cut(s) 1773, 2457
BsrI ACTGG 3 cut(s) 447, 2596, 3062
BssAI RCCGGY 1 cut(s) 965
BssECI CCNNGG 5 cut(s) 140, 187, 573, 1694, 2383
BssHII GCGCGC 1 cut(s) 196
BssMI GATC 5 cut(s) 1010, 1330, 1531, 2352, 2769
BssT1I CCWWGG 2 cut(s) 140, 2383
Bst2UI CCWGG 5 cut(s) 332, 340, 575, 1679, 2658
Bst4CI ACNGT 5 cut(s) 1031, 1427, 1583, 1657, 1810
Bst6I CTCTTC 5 cut(s) 80, 130, 595, 1377, 2820
BstAPI GCANNNNNTGC 2 cut(s) 362, 1658
BstAUI TGTACA 2 cut(s) 1773, 2457
BstBAI YACGTR 1 cut(s) 1164
BstBI TTCGAA 1 cut(s) 272
BstDSI CCRYGG 1 cut(s) 140
BstEII GGTNACC 1 cut(s) 334
BstFNI CGCG 2 cut(s) 198, 2558
BstH2I RGCGCY 1 cut(s) 1894
BstHHI GCGC 4 cut(s) 198, 200, 367, 1893
BstKTI GATC 5 cut(s) 1013, 1333, 1534, 2355, 2772
BstMAI GTCTC 4 cut(s) 321, 1782, 2178, 2937
BstMBI GATC 5 cut(s) 1010, 1330, 1531, 2352, 2769
BstMWI GCNNNNNNNGC 7 cut(s) 353, 362, 484, 493, 842, 1658, 2195
BstNI CCWGG 5 cut(s) 332, 340, 575, 1679, 2658
BstNSI RCATGY 2 cut(s) 2015, 2077
BstPI GGTNACC 1 cut(s) 334
BstSCI CCNGG 7 cut(s) 330, 338, 491, 573, 1677, 1693, 2656
BstSLI GKGCMC 1 cut(s) 1804
BstUI CGCG 2 cut(s) 198, 2558
BstV1I GCAGC 8 cut(s) 368, 854, 1093, 1420, 2289, 2572, 2575, 3026
BstV2I GAAGAC 1 cut(s) 686
BstXI CCANNNNNNTGG 1 cut(s) 2164
Bsu36I CCTNAGG 1 cut(s) 220
BsuRI GGCC 4 cut(s) 411, 1505, 1667, 2388
BtgI CCRYGG 1 cut(s) 140
BtsIMutI CAGTG 4 cut(s) 766, 1036, 1399, 2603
BveI ACCTGC 1 cut(s) 270
CaiI CAGNNNCTG 1 cut(s) 2504
CciI TCATGA 3 cut(s) 697, 1615, 2217
CfoI GCGC 4 cut(s) 198, 200, 367, 1893
Cfr10I RCCGGY 1 cut(s) 965
Cfr13I GGNCC 3 cut(s) 746, 1504, 2689
CseI GACGC 1 cut(s) 2195
CsiI ACCWGGT 2 cut(s) 330, 2656
Csp6I GTAC 6 cut(s) 526, 570, 1564, 1691, 1774, 2458
CviQI GTAC 6 cut(s) 526, 570, 1564, 1691, 1774, 2458
DpnI GATC 5 cut(s) 1012, 1332, 1533, 2354, 2771
DpnII GATC 5 cut(s) 1010, 1330, 1531, 2352, 2769
EaeI YGGCCR 1 cut(s) 2386
Eam1104I CTCTTC 5 cut(s) 80, 130, 595, 1377, 2820
EarI CTCTTC 5 cut(s) 80, 130, 595, 1377, 2820
EciI GGCGGA 2 cut(s) 151, 1514
Eco130I CCWWGG 2 cut(s) 140, 2383
Eco24I GRGCYC 3 cut(s) 380, 2467, 2845
Eco31I GGTCTC 1 cut(s) 321
Eco32I GATATC 1 cut(s) 1251
Eco47I GGWCC 2 cut(s) 746, 2689
Eco57I CTGAAG 4 cut(s) 692, 2211, 2319, 2745
Eco81I CCTNAGG 1 cut(s) 220
Eco88I CYCGRG 1 cut(s) 615
Eco91I GGTNACC 1 cut(s) 334
EcoO109I RGGNCCY 2 cut(s) 746, 1504
EcoO65I GGTNACC 1 cut(s) 334
EcoRII CCWGG 5 cut(s) 330, 338, 573, 1677, 2656
EcoRV GATATC 1 cut(s) 1251
EcoT14I CCWWGG 2 cut(s) 140, 2383
EcoT38I GRGCYC 3 cut(s) 380, 2467, 2845
ErhI CCWWGG 2 cut(s) 140, 2383
Esp3I CGTCTC 1 cut(s) 2178
FalI AAGNNNNNCTT 4 cut(s) 390, 422, 693, 725
FaqI GGGAC 2 cut(s) 2507, 2774
FauNDI CATATG 3 cut(s) 292, 679, 838
FbaI TGATCA 1 cut(s) 1330
FriOI GRGCYC 3 cut(s) 380, 2467, 2845
FspBI CTAG 6 cut(s) 353, 1476, 1671, 1766, 2372, 2867
FspI TGCGCA 1 cut(s) 366
GlaI GCGC 4 cut(s) 197, 199, 366, 1892
GsaI CCCAGC 2 cut(s) 375, 854
HaeII RGCGCY 1 cut(s) 1894
HaeIII GGCC 4 cut(s) 411, 1505, 1667, 2388
HapII CCGG 4 cut(s) 418, 492, 966, 1694
HgaI GACGC 1 cut(s) 2195
HhaI GCGC 4 cut(s) 198, 200, 367, 1893
Hin6I GCGC 4 cut(s) 196, 198, 365, 1891
HinP1I GCGC 4 cut(s) 196, 198, 365, 1891
HincII GTYRAC 3 cut(s) 216, 1753, 2071
HindII GTYRAC 3 cut(s) 216, 1753, 2071
HindIII AAGCTT 3 cut(s) 895, 2301, 2442
HinfI GANTC 7 cut(s) 431, 784, 1096, 1283, 1612, 2214, 2549
HpaI GTTAAC 2 cut(s) 216, 1753
HpaII CCGG 4 cut(s) 418, 492, 966, 1694
HphI GGTGA 7 cut(s) 328, 436, 589, 980, 2786, 3010, 3062
HpyAV CCTTC 9 cut(s) 74, 667, 800, 1373, 1613, 1880, 2093, 2115, 2774
HpyCH4III ACNGT 5 cut(s) 1031, 1427, 1583, 1657, 1810
HpyCH4IV ACGT 1 cut(s) 1163
HpyF10VI GCNNNNNNNGC 7 cut(s) 353, 362, 484, 493, 842, 1658, 2195
HpySE526I ACGT 1 cut(s) 1163
HspAI GCGC 4 cut(s) 196, 198, 365, 1891
KpnI GGTACC 2 cut(s) 573, 1694
Ksp22I TGATCA 1 cut(s) 1330
KspAI GTTAAC 2 cut(s) 216, 1753
Kzo9I GATC 5 cut(s) 1010, 1330, 1531, 2352, 2769
LmnI GCTCC 5 cut(s) 164, 1370, 2136, 3036, 3047
Lsp1109I GCAGC 8 cut(s) 368, 854, 1093, 1420, 2289, 2572, 2575, 3026
LweI GCATC 9 cut(s) 624, 871, 1547, 2008, 2368, 2435, 2593, 2605, 2995
MabI ACCWGGT 2 cut(s) 330, 2656
MaeI CTAG 6 cut(s) 353, 1476, 1671, 1766, 2372, 2867
MaeII ACGT 1 cut(s) 1163
MaeIII GTNAC 6 cut(s) 282, 334, 1033, 1583, 2090, 2248
MalI GATC 5 cut(s) 1012, 1332, 1533, 2354, 2771
MbiI CCGCTC 1 cut(s) 159
MboI GATC 5 cut(s) 1010, 1330, 1531, 2352, 2769
MfeI CAATTG 1 cut(s) 1341
MhlI GDGCHC 5 cut(s) 380, 1804, 2361, 2467, 2845
MlyI GAGTC 3 cut(s) 440, 2223, 2543
MmeI TCCRAC 8 cut(s) 46, 120, 525, 945, 1000, 2010, 2648, 2730
MroXI GAANNNNTTC 1 cut(s) 1401
MseI TTAA 6 cut(s) 215, 606, 1355, 1524, 1752, 2922
MslI CAYNNNNRTG 8 cut(s) 263, 735, 1392, 1410, 1620, 1713, 2016, 2162
MspI CCGG 4 cut(s) 418, 492, 966, 1694
MspR9I CCNGG 7 cut(s) 332, 340, 493, 575, 1679, 1695, 2658
MunI CAATTG 1 cut(s) 1341
Mva1269I GAATGC 5 cut(s) 233, 349, 1552, 2158, 2587
MvaI CCWGG 5 cut(s) 332, 340, 575, 1679, 2658
MvnI CGCG 2 cut(s) 198, 2558
MwoI GCNNNNNNNGC 7 cut(s) 353, 362, 484, 493, 842, 1658, 2195
NciI CCSGG 2 cut(s) 493, 1695
NcoI CCATGG 1 cut(s) 140
NdeI CATATG 3 cut(s) 292, 679, 838
NdeII GATC 5 cut(s) 1010, 1330, 1531, 2352, 2769
NheI GCTAGC 1 cut(s) 2866
NlaIV GGNNCC 4 cut(s) 146, 571, 747, 1692
NmeAIII GCCGAG 1 cut(s) 168
NmuCI GTSAC 4 cut(s) 282, 334, 1033, 1583
NsbI TGCGCA 1 cut(s) 366
NspI RCATGY 2 cut(s) 2015, 2077
NspV TTCGAA 1 cut(s) 272
PagI TCATGA 3 cut(s) 697, 1615, 2217
PauI GCGCGC 1 cut(s) 196
PciI ACATGT 1 cut(s) 2073
PcsI WCGNNNNNNNCGW 2 cut(s) 1241, 3019
PctI GAATGC 5 cut(s) 233, 349, 1552, 2158, 2587
PdmI GAANNNNTTC 1 cut(s) 1401
PfeI GAWTC 4 cut(s) 784, 1096, 1283, 1612
PflFI GACNNNGTC 2 cut(s) 332, 946
PflMI CCANNNNNTGG 1 cut(s) 2598
PleI GAGTC 3 cut(s) 439, 2222, 2543
PpsI GAGTC 3 cut(s) 439, 2222, 2543
Ppu21I YACGTR 1 cut(s) 1164
PpuMI RGGWCCY 1 cut(s) 746
PscI ACATGT 1 cut(s) 2073
PsiI TTATAA 1 cut(s) 863
Psp5II RGGWCCY 1 cut(s) 746
Psp6I CCWGG 5 cut(s) 330, 338, 573, 1677, 2656
PspEI GGTNACC 1 cut(s) 334
PspFI CCCAGC 2 cut(s) 371, 850
PspGI CCWGG 5 cut(s) 330, 338, 573, 1677, 2656
PspN4I GGNNCC 4 cut(s) 146, 571, 747, 1692
PspPI GGNCC 3 cut(s) 746, 1504, 2689
PspPPI RGGWCCY 1 cut(s) 746
PstNI CAGNNNCTG 1 cut(s) 2504
PsyI GACNNNGTC 2 cut(s) 332, 946
PteI GCGCGC 1 cut(s) 196
RsaI GTAC 6 cut(s) 527, 571, 1565, 1692, 1775, 2459
RsaNI GTAC 6 cut(s) 526, 570, 1564, 1691, 1774, 2458
RseI CAYNNNNRTG 8 cut(s) 263, 735, 1392, 1410, 1620, 1713, 2016, 2162
SaqAI TTAA 6 cut(s) 215, 606, 1355, 1524, 1752, 2922
Sau3AI GATC 5 cut(s) 1010, 1330, 1531, 2352, 2769
Sau96I GGNCC 3 cut(s) 746, 1504, 2689
SchI GAGTC 3 cut(s) 440, 2223, 2543
ScrFI CCNGG 7 cut(s) 332, 340, 493, 575, 1679, 1695, 2658
SduI GDGCHC 5 cut(s) 380, 1804, 2361, 2467, 2845
SexAI ACCWGGT 2 cut(s) 330, 2656
SfaNI GCATC 9 cut(s) 624, 871, 1547, 2008, 2368, 2435, 2593, 2605, 2995
SfuI TTCGAA 1 cut(s) 272
SinI GGWCC 2 cut(s) 746, 2689
SmiMI CAYNNNNRTG 8 cut(s) 263, 735, 1392, 1410, 1620, 1713, 2016, 2162
SpeI ACTAGT 1 cut(s) 1670
SsiI CCGC 9 cut(s) 157, 162, 421, 980, 1269, 1499, 1971, 2088, 2556
SspI AATATT 1 cut(s) 2036
SspMI CTAG 6 cut(s) 353, 1476, 1671, 1766, 2372, 2867
StyD4I CCNGG 7 cut(s) 330, 338, 491, 573, 1677, 1693, 2656
StyI CCWWGG 2 cut(s) 140, 2383
TaaI ACNGT 5 cut(s) 1031, 1427, 1583, 1657, 1810
TaiI ACGT 1 cut(s) 1166
TaqI TCGA 7 cut(s) 272, 309, 832, 1244, 1530, 2355, 2376
TatI WGTACW 2 cut(s) 1773, 2457
TauI GCSGC 3 cut(s) 424, 983, 1973
TfiI GAWTC 4 cut(s) 784, 1096, 1283, 1612
Tru1I TTAA 6 cut(s) 215, 606, 1355, 1524, 1752, 2922
Tru9I TTAA 6 cut(s) 215, 606, 1355, 1524, 1752, 2922
TscAI CASTG 4 cut(s) 766, 1036, 1399, 2603
TseFI GTSAC 4 cut(s) 282, 334, 1033, 1583
TseI GCWGC 8 cut(s) 356, 842, 1106, 1433, 2277, 2585, 2588, 3039
Tsp45I GTSAC 4 cut(s) 282, 334, 1033, 1583
TspGWI ACGGA 2 cut(s) 457, 2782
TspRI CASTG 4 cut(s) 766, 1036, 1399, 2603
Tth111I GACNNNGTC 2 cut(s) 332, 946
Van91I CCANNNNNTGG 1 cut(s) 2598
VneI GTGCAC 1 cut(s) 1800
VpaK11BI GGWCC 2 cut(s) 746, 2689
XapI RAATTY 2 cut(s) 1526, 1704
XbaI TCTAGA 2 cut(s) 1475, 1765
XceI RCATGY 2 cut(s) 2015, 2077
XcmI CCANNNNNNNNNTGG 2 cut(s) 1675, 2664
XmnI GAANNNNTTC 1 cut(s) 1401
XspI CTAG 6 cut(s) 353, 1476, 1671, 1766, 2372, 2867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.