Rroxscaffold_7G00157080

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0007813
Physical Location & Seq
Reverse (-)
906167 .. 909644
3478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00157080.1

Sequence Viewer

Length: 3060 bp
ATGCAGTTGCAAACCAATCTCCGACGCAAATCAATTTTCTTCTCCACCAAAAACCCCAAAACCCTTGTCCCTCTCTTCAATTTCTCCTCTCTCTCCAACCCCATCTCTCACTCGCAACCCTCTTCTTCATCTTCTCCATGGTTCTCTATCCTCCGCTCCGCCATTGCCAATTCAGACTTGCCCCTCGGCAAGCGCGCCCACGCCCTTATGCTAACCTCAGGCGAATGCCGAGACCATTTTCTAATCAACAATCTCATCACCATGTATTCAAAATGCAGGTCGCTCACGTATGCACGCCACCTGTTCGATAAAAGTCCTGAGCGAGACCTGGTCACCTGGAATGCCATTCTAGCAGCCTATGCGCAAGCTGGGGGCTCTGTGGTTGAGAATGTTCAAGAGGGGCTTGGCCTTTTCCGGCGGCTTCGTGAGTCTGTTGTGTTCACCAGTCGGCACACTTTGGCTTCCGTTTTGAAGCTGTGTTTGCTGTCGGGGCGTGTTTGCATTTCGGAGGCTGTTCAGGGGTACGCTGTGAAAATTGGGTTGGAGTGGGATGTGTTTGTTTCGGGTACCCTGGTGAATGTGTATTGCAAACTCAGAAGAGTTAAGGAGGCTCGGGCTTTGTTTGATGGGATGCTGGAACGGGATGTTGTGTTGTGGAACACAATGCTCAAGGCATATGTGGAAATGGGTCTTCATGAAGAAGCACTTGCTCTTTTCTCTAAGTTTCATCGGAGTGGATTGGGTCCTGATGATGTCAGTGTGCGTTGTGCTCTTAGTGGGATTCACAAAGTTGATTATGATGAAGGCAAGAGGCACATGGAGGAGGTTCAAGCATATGCAGCAAAGCTGGGGGAGTTTATAACTAATGTGGATGACGAAGCCCATCCACCAAGCTTGTGTGTTCCCACTACTAATTCCGACATATTTTTGTGGAACAAGACATTGTCTAAGTATGTCCGAGCTGGTGAAAATTGGGCTGCCATAGAGTGCTTTAGAAATATGATTATATCAAAAGTTGGATATGACAGTGTGACATTAGTTATTATTCTATCTGCGATTGTAGGCACAAATAATTTGGAGGTGGGGAAACAGATTCATGGTGCTGCTTTGAAATCAGATTTTGGTTCTGTTCTTTTGGTAGCAAATAGCCTTATCAACATGTATTCAAAGGCTCGCTGTGTTCACTTTGCGAGAGAAGTATTCAATCACATGAAAGAAGTGGACCTAGTTTCATGGAACTCGATGATATCATGTTATGCTCAAAGCGGTTCAGGAGAGGAATCAATAAATCTATTTATAGGTTTATTACGGGATGGTCTAAGACCTGATCAATTTACAATTGCAAGTATTTTAAGGGCTTGCTCCTCTCTTCAAGAAAGTTTGCATCTCAGTGAACAGGTTCATGTTCATGCAATAAAGAACAGTATTGCTGCTGACAGATTTGTTTCAACAGCTCTTATTGATGTTTATTCTAGGAGTGGAAAGATGGACGAGGCGGAGGCCCTTTTAGATAACAAAGTTAAATTTGATCTGGCATCTTGGAATGCGTTGATGTTTGGGTACATAAAGAGTAATGACAGTCACAAAGCACTACAACTTATGAGGATGATTCATGAAGGTGGAAAGAGAGTAGATGAGATTACTTTGGCAACTGTTGCTAAGGCCACTAGTTGCCTGGTAGAGTTGGTACCGGGGAAGCAAATTCATGCTCATGTCATAAAAACAGGGTATTCAAAGGACTTATATGTTAACAGCAGTATTCTAGATATGTACATAAAATGTGGAGACATGAAAAGTGCACACACAGTTTTCAATGACATTCCTGCACCTGATGATGTTGCGTGGACAACTCTAATCTCAGGATGTTTAGAAAATGGAGATGAAGGGCGCTCTGTGTCTATATACCATCAGATGAGGCAGTCAGGAGTTCAGCCTGATGAATACACCTTAGCTACCCTTGTCAAAGCCGCCTCTTGTCTGACAGCATTGGAACAAGGGAAGCAGATACATGCAGATGCAATAAAGTTGGAATATTCCTCAGACCCTTATGTTGCGGCATCACTTGTTGACATGTATGCCAAGTGCGGTAACATAGAAGGTGCATATCGTTTATTCAGAAGGATGGATGTCGGGAGCATTGTCCTGTGGAATGCCATGTTGGTGGGTTTAGCTCAACATGGAGACGCTGAAGAAGCACTAAATCTTTTCAGAGTCATGAAATCTAATAACGTTTTTCCTGATAGAGTTACTTTCATTGGAGTTCTTTCTGCTTGCAGCCACTCTGGTTTAGTTTCTGAAGCTTACGAGCATTTTTCTTCAATGCAAAGAGATTACGGCATTGAACCTGAGATCGAGCACTACTCTTGTCTAGTCGATGCCCTTGGCCGCGCAGGGCGTGTTCAAGAGGCAGAAAAGCTGATAGCATCAATGCCATTTGAAGCTTCTGCTTCAATGTACAGAGCCCTGCTTGGTGGTTGCAGGGTTCAAGGGGACACAGAAACAGGAAAACGAGTGGCAGAACAGCTCTTGGCTATTGAGCCAACTGACTCATCAGCGTATGTTCTCATATCCAATATGAATGCTGCTGCCAACCAGTGGGATGCTGTGAACGATGCTCGTCAAATGATGAAACAGAAGAATGTAAAGAAAGAACCAGGTTTCAGTTGGATAGATGTGAAGAACAAGGTCCATTTGTTTGTAGTAGATGACAAATCTCATCCTGAAACCGATTTGATATACGACAAGTTGGAGGACTTGATGAAACGGATCGGTGAAGAAGGGTATGTCCCTGACAAAGAGTTTGTGCTTGCTGATGTTGAAGAAGAGGAAAAAGAGCGAGCCCTATATTACCATAGTGAGAGGCTAGCAATAGCTTATGGACTGATAAGCACTCCCTCATCTGCCATTATTCGGGTCATTAAGAACCTTAGAGTTTGTGGAGACTGCCATAATGCAATCAAATACATATCAAAGGTTTCTCAAAGAGAAATTGTGGTGAGAGATGCAAATCGCTTCCATCGTTTCAGAAATGGGAGCTGCTCCTGTGGTGATTACTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1771 PAM2 PPR PPR_2 Smr

Protein Analysis

1019

Amino Acids

113.51

Weight (kDa)

6.43

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 214 - 261 1.5e-07 PPR repeat family
PPR_2 PF13041 408 - 455 8.5e-07 PPR repeat family
PPR_2 PF13041 610 - 656 5.7e-09 PPR repeat family
PPR_2 PF13041 712 - 759 3.3e-10 PPR repeat family
PPR PF01535 714 - 744 2.9e-06 PPR repeat
E_motif PF20431 831 - 891 5.5e-16 E motif
Eplus_motif PF20430 896 - 923 6.9e-09 E+ motif
DYW_deaminase PF14432 927 - 1019 1.2e-43 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 860
Acc16I TGCGCA 1 cut(s) 363
Acc36I ACCTGC 1 cut(s) 267
Acc65I GGTACC 2 cut(s) 566, 1687
AccB1I GGYRCC 2 cut(s) 566, 1687
AccB7I CCANNNNNTGG 1 cut(s) 2595
AccBSI CCGCTC 1 cut(s) 156
AccII CGCG 2 cut(s) 195, 2388
AciI CCGC 9 cut(s) 154, 159, 418, 1266, 1496, 1968, 2054, 2085, 2386
AclI AACGTT 1 cut(s) 2229
AclWI GGATC 1 cut(s) 2774
AcoI YGGCCR 1 cut(s) 2383
AcsI RAATTY 2 cut(s) 1523, 1701
AcuI CTGAAG 2 cut(s) 2208, 2316
AfaI GTAC 6 cut(s) 524, 568, 1562, 1689, 1772, 2456
AfiI CCNNNNNNNGG 2 cut(s) 2595, 2910
AflIII ACRYGT 2 cut(s) 1158, 2070
AhlI ACTAGT 1 cut(s) 1667
AjnI CCWGG 5 cut(s) 327, 335, 570, 1674, 2653
AjuI GAANNNNNNNTTGG 4 cut(s) 524, 556, 2141, 2173
Alw21I GWGCWC 3 cut(s) 772, 1801, 2358
Alw26I GTCTC 5 cut(s) 225, 318, 1779, 2175, 2934
Alw44I GTGCAC 1 cut(s) 1797
AlwI GGATC 1 cut(s) 2774
Ama87I CYCGRG 1 cut(s) 612
AoxI GGCC 4 cut(s) 406, 1500, 1662, 2383
ApaLI GTGCAC 1 cut(s) 1797
ApeKI GCWGC 9 cut(s) 353, 839, 977, 1103, 1430, 2274, 2582, 2585, 3036
ApoI RAATTY 2 cut(s) 1523, 1701
ArsI GACNNNNNNTTYG 6 cut(s) 51, 83, 263, 295, 2783, 2815
Asp700I GAANNNNTTC 1 cut(s) 1398
Asp718I GGTACC 2 cut(s) 566, 1687
AspLEI GCGC 5 cut(s) 195, 197, 364, 1890, 2390
AspS9I GGNCC 4 cut(s) 743, 1222, 1501, 2686
AsuC2I CCSGG 1 cut(s) 1692
AsuHPI GGTGA 8 cut(s) 250, 325, 433, 586, 977, 2783, 3007, 3059
AsuNHI GCTAGC 1 cut(s) 2863
AvaI CYCGRG 1 cut(s) 612
AvaII GGWCC 3 cut(s) 743, 1222, 2686
AxyI CCTNAGG 1 cut(s) 217
BaeGI GKGCMC 1 cut(s) 1801
BaeI ACNNNNGTAYC 2 cut(s) 558, 591
BanI GGYRCC 2 cut(s) 566, 1687
BanII GRGCYC 3 cut(s) 377, 2464, 2842
BbsI GAAGAC 1 cut(s) 683
Bbv12I GWGCWC 3 cut(s) 772, 1801, 2358
BbvI GCAGC 9 cut(s) 365, 851, 964, 1090, 1417, 2286, 2569, 2572, 3023
BccI CCATC 8 cut(s) 110, 620, 891, 1307, 1480, 1914, 2116, 3024
BceAI ACGGC 1 cut(s) 2350
BciT130I CCWGG 5 cut(s) 329, 337, 572, 1676, 2655
BclI TGATCA 1 cut(s) 1327
BcnI CCSGG 1 cut(s) 1692
BcoDI GTCTC 5 cut(s) 225, 318, 1779, 2175, 2934
BcuI ACTAGT 1 cut(s) 1667
BfaI CTAG 7 cut(s) 350, 1226, 1473, 1668, 1763, 2369, 2864
BfoI RGCGCY 1 cut(s) 1891
BfuAI ACCTGC 1 cut(s) 267
Bme1390I CCNGG 6 cut(s) 329, 337, 572, 1676, 1692, 2655
Bme18I GGWCC 3 cut(s) 743, 1222, 2686
BmeT110I CYCGRG 1 cut(s) 612
BmgT120I GGNCC 4 cut(s) 743, 1222, 1501, 2686
BmiI GGNNCC 3 cut(s) 568, 744, 1689
BmrFI CCNGG 6 cut(s) 329, 337, 572, 1676, 1692, 2655
BmtI GCTAGC 1 cut(s) 2867
BpiI GAAGAC 1 cut(s) 683
BplI GAGNNNNNCTC 2 cut(s) 2345, 2377
Bpu10I CCTNAGC 3 cut(s) 318, 1659, 1948
BpuEI CTTGAG 1 cut(s) 653
BpuMI CCSGG 1 cut(s) 1692
BsaAI YACGTR 1 cut(s) 288
BsaBI GATNNNNATC 1 cut(s) 3006
BsaI GGTCTC 2 cut(s) 225, 318
BsaJI CCNNGG 5 cut(s) 137, 184, 570, 1691, 2380
Bsc4I CCNNNNNNNGG 2 cut(s) 2595, 2910
Bse1I ACTGG 3 cut(s) 444, 2593, 3059
Bse21I CCTNAGG 1 cut(s) 217
Bse3DI GCAATG 1 cut(s) 162
Bse8I GATNNNNATC 1 cut(s) 3006
BseBI CCWGG 5 cut(s) 329, 337, 572, 1676, 2655
BseDI CCNNGG 5 cut(s) 137, 184, 570, 1691, 2380
BseJI GATNNNNATC 1 cut(s) 3006
BseLI CCNNNNNNNGG 2 cut(s) 2595, 2910
BseMI GCAATG 1 cut(s) 162
BseMII CTCAG 7 cut(s) 231, 309, 607, 1402, 1872, 2052, 2337
BseNI ACTGG 3 cut(s) 444, 2593, 3059
BsePI GCGCGC 1 cut(s) 193
BseRI GAGGAG 3 cut(s) 76, 836, 1354
BseSI GKGCMC 1 cut(s) 1801
BseXI GCAGC 9 cut(s) 365, 851, 964, 1090, 1417, 2286, 2569, 2572, 3023
BseYI CCCAGC 2 cut(s) 368, 847
BsgI GTGCAG 1 cut(s) 1809
Bsh1236I CGCG 2 cut(s) 195, 2388
BshFI GGCC 4 cut(s) 408, 1502, 1664, 2385
BshNI GGYRCC 2 cut(s) 566, 1687
BsiHKAI GWGCWC 3 cut(s) 772, 1801, 2358
BsiHKCI CYCGRG 1 cut(s) 612
BsiSI CCGG 2 cut(s) 415, 1691
BslFI GGGAC 3 cut(s) 53, 2504, 2771
BslI CCNNNNNNNGG 2 cut(s) 2595, 2910
BsmAI GTCTC 5 cut(s) 225, 318, 1779, 2175, 2934
BsmBI CGTCTC 1 cut(s) 2175
BsmFI GGGAC 3 cut(s) 53, 2504, 2771
BsmI GAATGC 5 cut(s) 230, 346, 1549, 2155, 2584
BsnI GGCC 4 cut(s) 408, 1502, 1664, 2385
Bso31I GGTCTC 2 cut(s) 225, 318
BsoBI CYCGRG 1 cut(s) 612
Bsp1286I GDGCHC 6 cut(s) 377, 772, 1801, 2358, 2464, 2842
Bsp1407I TGTACA 2 cut(s) 1770, 2454
Bsp143I GATC 4 cut(s) 1327, 1528, 2349, 2766
Bsp19I CCATGG 1 cut(s) 137
BspACI CCGC 9 cut(s) 154, 159, 418, 1266, 1496, 1968, 2054, 2085, 2386
BspANI GGCC 4 cut(s) 408, 1502, 1664, 2385
BspCNI CTCAG 7 cut(s) 230, 310, 606, 1401, 1871, 2051, 2338
BspFNI CGCG 2 cut(s) 195, 2388
BspHI TCATGA 3 cut(s) 694, 1612, 2214
BspLI GGNNCC 3 cut(s) 568, 744, 1689
BspMI ACCTGC 1 cut(s) 267
BspOI GCTAGC 1 cut(s) 2867
BspPI GGATC 1 cut(s) 2774
BspT107I GGYRCC 2 cut(s) 566, 1687
BspTNI GGTCTC 2 cut(s) 225, 318
BsrBI CCGCTC 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 162
BsrGI TGTACA 2 cut(s) 1770, 2454
BsrI ACTGG 3 cut(s) 444, 2593, 3059
BssECI CCNNGG 5 cut(s) 137, 184, 570, 1691, 2380
BssHII GCGCGC 1 cut(s) 193
BssMI GATC 4 cut(s) 1327, 1528, 2349, 2766
BssT1I CCWWGG 2 cut(s) 137, 2380
Bst2UI CCWGG 5 cut(s) 329, 337, 572, 1676, 2655
Bst4CI ACNGT 5 cut(s) 1028, 1424, 1580, 1654, 1807
Bst6I CTCTTC 5 cut(s) 80, 127, 592, 1374, 2817
BstAPI GCANNNNNTGC 2 cut(s) 359, 1655
BstAUI TGTACA 2 cut(s) 1770, 2454
BstBAI YACGTR 1 cut(s) 288
BstDSI CCRYGG 1 cut(s) 137
BstEII GGTNACC 1 cut(s) 331
BstFNI CGCG 2 cut(s) 195, 2388
BstH2I RGCGCY 1 cut(s) 1891
BstHHI GCGC 5 cut(s) 195, 197, 364, 1890, 2390
BstKTI GATC 4 cut(s) 1330, 1531, 2352, 2769
BstMAI GTCTC 5 cut(s) 225, 318, 1779, 2175, 2934
BstMBI GATC 4 cut(s) 1327, 1528, 2349, 2766
BstMWI GCNNNNNNNGC 7 cut(s) 350, 359, 481, 490, 839, 1655, 2192
BstNI CCWGG 5 cut(s) 329, 337, 572, 1676, 2655
BstNSI RCATGY 3 cut(s) 1162, 2012, 2074
BstPI GGTNACC 1 cut(s) 331
BstSCI CCNGG 6 cut(s) 327, 335, 570, 1674, 1690, 2653
BstSLI GKGCMC 1 cut(s) 1801
BstUI CGCG 2 cut(s) 195, 2388
BstV1I GCAGC 9 cut(s) 365, 851, 964, 1090, 1417, 2286, 2569, 2572, 3023
BstV2I GAAGAC 1 cut(s) 683
BstXI CCANNNNNNTGG 1 cut(s) 2161
Bsu36I CCTNAGG 1 cut(s) 217
BsuRI GGCC 4 cut(s) 408, 1502, 1664, 2385
BtgI CCRYGG 1 cut(s) 137
BtsIMutI CAGTG 4 cut(s) 763, 1033, 1396, 2600
BveI ACCTGC 1 cut(s) 267
CciI TCATGA 3 cut(s) 694, 1612, 2214
CfoI GCGC 5 cut(s) 195, 197, 364, 1890, 2390
Cfr13I GGNCC 4 cut(s) 743, 1222, 1501, 2686
CseI GACGC 2 cut(s) 33, 2192
CsiI ACCWGGT 2 cut(s) 327, 2653
Csp6I GTAC 6 cut(s) 523, 567, 1561, 1688, 1771, 2455
CspCI CAANNNNNGTGG 2 cut(s) 876, 911
CviQI GTAC 6 cut(s) 523, 567, 1561, 1688, 1771, 2455
DpnI GATC 4 cut(s) 1329, 1530, 2351, 2768
DpnII GATC 4 cut(s) 1327, 1528, 2349, 2766
EaeI YGGCCR 1 cut(s) 2383
Eam1104I CTCTTC 5 cut(s) 80, 127, 592, 1374, 2817
EarI CTCTTC 5 cut(s) 80, 127, 592, 1374, 2817
EciI GGCGGA 2 cut(s) 148, 1511
Eco130I CCWWGG 2 cut(s) 137, 2380
Eco24I GRGCYC 3 cut(s) 377, 2464, 2842
Eco31I GGTCTC 2 cut(s) 225, 318
Eco32I GATATC 1 cut(s) 1248
Eco47I GGWCC 3 cut(s) 743, 1222, 2686
Eco57I CTGAAG 2 cut(s) 2208, 2316
Eco81I CCTNAGG 1 cut(s) 217
Eco88I CYCGRG 1 cut(s) 612
Eco91I GGTNACC 1 cut(s) 331
EcoO109I RGGNCCY 2 cut(s) 743, 1501
EcoO65I GGTNACC 1 cut(s) 331
EcoRII CCWGG 5 cut(s) 327, 335, 570, 1674, 2653
EcoRV GATATC 1 cut(s) 1248
EcoT14I CCWWGG 2 cut(s) 137, 2380
EcoT38I GRGCYC 3 cut(s) 377, 2464, 2842
ErhI CCWWGG 2 cut(s) 137, 2380
Esp3I CGTCTC 1 cut(s) 2175
FalI AAGNNNNNCTT 4 cut(s) 387, 419, 690, 722
FaqI GGGAC 3 cut(s) 53, 2504, 2771
FauNDI CATATG 2 cut(s) 676, 835
FbaI TGATCA 1 cut(s) 1327
FriOI GRGCYC 3 cut(s) 377, 2464, 2842
FspBI CTAG 7 cut(s) 350, 1226, 1473, 1668, 1763, 2369, 2864
FspI TGCGCA 1 cut(s) 363
GlaI GCGC 5 cut(s) 194, 196, 363, 1889, 2389
GsaI CCCAGC 2 cut(s) 372, 851
HaeII RGCGCY 1 cut(s) 1891
HaeIII GGCC 4 cut(s) 408, 1502, 1664, 2385
HapII CCGG 2 cut(s) 415, 1691
HgaI GACGC 2 cut(s) 33, 2192
HhaI GCGC 5 cut(s) 195, 197, 364, 1890, 2390
Hin6I GCGC 5 cut(s) 193, 195, 362, 1888, 2388
HinP1I GCGC 5 cut(s) 193, 195, 362, 1888, 2388
HincII GTYRAC 2 cut(s) 1750, 2068
HindII GTYRAC 2 cut(s) 1750, 2068
HindIII AAGCTT 3 cut(s) 892, 2298, 2439
HinfI GANTC 7 cut(s) 428, 781, 1093, 1280, 1609, 2211, 2546
HpaI GTTAAC 1 cut(s) 1750
HpaII CCGG 2 cut(s) 415, 1691
HphI GGTGA 8 cut(s) 250, 325, 433, 586, 977, 2783, 3007, 3059
Hpy166II GTNNAC 9 cut(s) 441, 1183, 1222, 1394, 1750, 1799, 1845, 2068, 2608
Hpy8I GTNNAC 9 cut(s) 441, 1183, 1222, 1394, 1750, 1799, 1845, 2068, 2608
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 6 cut(s) 797, 1610, 1877, 2090, 2112, 2771
HpyCH4III ACNGT 5 cut(s) 1028, 1424, 1580, 1654, 1807
HpyCH4IV ACGT 2 cut(s) 287, 2229
HpyF10VI GCNNNNNNNGC 7 cut(s) 350, 359, 481, 490, 839, 1655, 2192
HpySE526I ACGT 2 cut(s) 287, 2229
HspAI GCGC 5 cut(s) 193, 195, 362, 1888, 2388
KpnI GGTACC 2 cut(s) 570, 1691
Ksp22I TGATCA 1 cut(s) 1327
KspAI GTTAAC 1 cut(s) 1750
Kzo9I GATC 4 cut(s) 1327, 1528, 2349, 2766
LmnI GCTCC 5 cut(s) 161, 1367, 2133, 3033, 3044
Lsp1109I GCAGC 9 cut(s) 365, 851, 964, 1090, 1417, 2286, 2569, 2572, 3023
MabI ACCWGGT 2 cut(s) 327, 2653
MaeI CTAG 7 cut(s) 350, 1226, 1473, 1668, 1763, 2369, 2864
MaeII ACGT 2 cut(s) 287, 2229
MaeIII GTNAC 5 cut(s) 331, 1030, 1580, 2087, 2245
MalI GATC 4 cut(s) 1329, 1530, 2351, 2768
MbiI CCGCTC 1 cut(s) 156
MboI GATC 4 cut(s) 1327, 1528, 2349, 2766
MfeI CAATTG 1 cut(s) 1338
MhlI GDGCHC 6 cut(s) 377, 772, 1801, 2358, 2464, 2842
MlyI GAGTC 3 cut(s) 437, 2220, 2540
MmeI TCCRAC 8 cut(s) 46, 120, 522, 942, 997, 2007, 2645, 2727
MroXI GAANNNNTTC 1 cut(s) 1398
MseI TTAA 5 cut(s) 603, 1352, 1521, 1749, 2919
MslI CAYNNNNRTG 8 cut(s) 260, 732, 1389, 1407, 1617, 1710, 2013, 2159
MspI CCGG 2 cut(s) 415, 1691
MspR9I CCNGG 6 cut(s) 329, 337, 572, 1676, 1692, 2655
MunI CAATTG 1 cut(s) 1338
Mva1269I GAATGC 5 cut(s) 230, 346, 1549, 2155, 2584
MvaI CCWGG 5 cut(s) 329, 337, 572, 1676, 2655
MvnI CGCG 2 cut(s) 195, 2388
MwoI GCNNNNNNNGC 7 cut(s) 350, 359, 481, 490, 839, 1655, 2192
NciI CCSGG 1 cut(s) 1692
NcoI CCATGG 1 cut(s) 137
NdeI CATATG 2 cut(s) 676, 835
NdeII GATC 4 cut(s) 1327, 1528, 2349, 2766
NheI GCTAGC 1 cut(s) 2863
NlaIV GGNNCC 3 cut(s) 568, 744, 1689
NmeAIII GCCGAG 2 cut(s) 165, 254
NmuCI GTSAC 3 cut(s) 331, 1030, 1580
NsbI TGCGCA 1 cut(s) 363
NspI RCATGY 3 cut(s) 1162, 2012, 2074
PagI TCATGA 3 cut(s) 694, 1612, 2214
PauI GCGCGC 1 cut(s) 193
PciI ACATGT 2 cut(s) 1158, 2070
PcsI WCGNNNNNNNCGW 1 cut(s) 3016
PctI GAATGC 5 cut(s) 230, 346, 1549, 2155, 2584
PdmI GAANNNNTTC 1 cut(s) 1398
PfeI GAWTC 4 cut(s) 781, 1093, 1280, 1609
PflFI GACNNNGTC 2 cut(s) 329, 943
PflMI CCANNNNNTGG 1 cut(s) 2595
PleI GAGTC 3 cut(s) 436, 2219, 2540
PpsI GAGTC 3 cut(s) 436, 2219, 2540
Ppu21I YACGTR 1 cut(s) 288
PpuMI RGGWCCY 1 cut(s) 743
PscI ACATGT 2 cut(s) 1158, 2070
PsiI TTATAA 1 cut(s) 860
Psp1406I AACGTT 1 cut(s) 2229
Psp5II RGGWCCY 1 cut(s) 743
Psp6I CCWGG 5 cut(s) 327, 335, 570, 1674, 2653
PspEI GGTNACC 1 cut(s) 331
PspFI CCCAGC 2 cut(s) 368, 847
PspGI CCWGG 5 cut(s) 327, 335, 570, 1674, 2653
PspN4I GGNNCC 3 cut(s) 568, 744, 1689
PspPI GGNCC 4 cut(s) 743, 1222, 1501, 2686
PspPPI RGGWCCY 1 cut(s) 743
PsyI GACNNNGTC 2 cut(s) 329, 943
PteI GCGCGC 1 cut(s) 193
RsaI GTAC 6 cut(s) 524, 568, 1562, 1689, 1772, 2456
RsaNI GTAC 6 cut(s) 523, 567, 1561, 1688, 1771, 2455
RseI CAYNNNNRTG 8 cut(s) 260, 732, 1389, 1407, 1617, 1710, 2013, 2159
SaqAI TTAA 5 cut(s) 603, 1352, 1521, 1749, 2919
Sau3AI GATC 4 cut(s) 1327, 1528, 2349, 2766
Sau96I GGNCC 4 cut(s) 743, 1222, 1501, 2686
SchI GAGTC 3 cut(s) 437, 2220, 2540
ScrFI CCNGG 6 cut(s) 329, 337, 572, 1676, 1692, 2655
SduI GDGCHC 6 cut(s) 377, 772, 1801, 2358, 2464, 2842
SexAI ACCWGGT 2 cut(s) 327, 2653
SinI GGWCC 3 cut(s) 743, 1222, 2686
SmiMI CAYNNNNRTG 8 cut(s) 260, 732, 1389, 1407, 1617, 1710, 2013, 2159
SmlI CTYRAG 1 cut(s) 668
SmoI CTYRAG 1 cut(s) 668
SpeI ACTAGT 1 cut(s) 1667
SsiI CCGC 9 cut(s) 154, 159, 418, 1266, 1496, 1968, 2054, 2085, 2386
SspI AATATT 1 cut(s) 2033
SspMI CTAG 7 cut(s) 350, 1226, 1473, 1668, 1763, 2369, 2864
StyD4I CCNGG 6 cut(s) 327, 335, 570, 1674, 1690, 2653
StyI CCWWGG 2 cut(s) 137, 2380
TaaI ACNGT 5 cut(s) 1028, 1424, 1580, 1654, 1807
TaiI ACGT 2 cut(s) 290, 2232
TaqI TCGA 4 cut(s) 306, 1241, 2352, 2373
TatI WGTACW 2 cut(s) 1770, 2454
TauI GCSGC 4 cut(s) 421, 1970, 2057, 2388
TfiI GAWTC 4 cut(s) 781, 1093, 1280, 1609
Tru1I TTAA 5 cut(s) 603, 1352, 1521, 1749, 2919
Tru9I TTAA 5 cut(s) 603, 1352, 1521, 1749, 2919
TscAI CASTG 4 cut(s) 763, 1033, 1396, 2600
TseFI GTSAC 3 cut(s) 331, 1030, 1580
TseI GCWGC 9 cut(s) 353, 839, 977, 1103, 1430, 2274, 2582, 2585, 3036
Tsp45I GTSAC 3 cut(s) 331, 1030, 1580
TspGWI ACGGA 2 cut(s) 454, 2779
TspRI CASTG 4 cut(s) 763, 1033, 1396, 2600
Tth111I GACNNNGTC 2 cut(s) 329, 943
Van91I CCANNNNNTGG 1 cut(s) 2595
VneI GTGCAC 1 cut(s) 1797
VpaK11BI GGWCC 3 cut(s) 743, 1222, 2686
XapI RAATTY 2 cut(s) 1523, 1701
XbaI TCTAGA 1 cut(s) 1762
XceI RCATGY 3 cut(s) 1162, 2012, 2074
XcmI CCANNNNNNNNNTGG 2 cut(s) 1672, 2661
XmnI GAANNNNTTC 1 cut(s) 1398
XspI CTAG 7 cut(s) 350, 1226, 1473, 1668, 1763, 2369, 2864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.