RLG00000010354

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0007813
Physical Location & Seq
Reverse (-)
931622 .. 936123
4502 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010354

Sequence Viewer

Length: 3231 bp
ATGGAGACAGGTTCTGGGAAGACAATGATGGCTGTGATGCTCATTGATGAAATTGGTCAAGCTATCAAGTCATCTGGTGACAACAAATTGATCACACCAGTTTTGAAGTGGAGGAGTATTATGGAGCCAAGGGGGTTGATGCATGGGATAAGGAGCATTAGGAAAAGGAATTTAAAACCCATGATAAAGGAATTCTTGACCATAGAAGCAGTATGCTTGATGATCATGGATGAGTGCCATCGGGCTACCAGAAACCACCCTTGTACAAAGATAATGAAGGAATTTTATCACAGGTCTAGTATCAAGCCAAAAGTTTTTGGAATGACGGCTTCACCTGTAATTCGAAAAGGTGTCTCATCCACAATGGACTTTGAAGATCAAATATCAGAACTCAAAAGCATTTTGGATTCCCAGCTGCAGACCAATCTCCGACCCAAATCAATTTTCTTCTCCACCAAAAACCCGAAAACCCTTCTCCCTCTCTTCAATTTCTCCTCTCTCTCCAACCCCATCTCTCACTCTACCCATCCCTCTTCTTCATCTTCTCCATGGTTCTCTATCCTCCGCTCCGCCATTGCCAATACAGACTTGCCCCTCGGCAAGCGCGCCCACGCCCTTATGTTAACCTCAGGCGAATGCCAAGACCATTTTCTAATCAACAATCTCATCACCATGTATTCGAAATGCAGGTCACTCACATATGCACGCCACCTGTTCGATAAAAGTCCTGAGCGAGACCTGGTCACCTGGAATGCCATTCTAGCAGCCTATGCGCAAGCTGGGGGCTCTGTGGTTGAGAATGTTCAAGAGGGGCTTGGCCTTTTCCGGCGGCTTCGTGAGTCTGTTGTGTTCACCAGTCGGCACACTTTGGCTTCCGTTTTGAAGCTGTGTTTGCTGTCCGGGCGTGTTTGGATTTCGGAGGCTGTTCATGGGTACGCTGTGAAAATTGGGTTGGAGTGGGATGTGTTTGTTTCGGGTACCCTGGTGAATGTGTATTGTAAACTCAGAAGAGTTAAGGAGGCTCGGGCTTTGTTTGATGGGATGCTGGAACGGGATGTTGTGTTGTGGAACACAATGCTGAAGGCATATGTGGAAATGGGTCTTCATGAAGAAGCACTTGCTTTTTTCTCTAAGTTTCATCGGAGTGGATTGGGTCCTGATGATGTCAGTGTGCGTTGTGTTCTTAATGGGATTCACAAAGTTGATTATGATGAAGGCAAGAGGCACATGGAGGAGGTTCGAGCATATGCAGCAAAGCTGGGGGAGTTTATAAGTAATGTGGATGATGATGCCCATCCAACGAGTTTATGTGATCCTACTACTAATTCCGACATATTTCTGTGGAACAAGAAGTTGTCTAAGTATATCCGAGCTCGTGAAAATTGGGCTGCAATAGATTGCTTTAGAAATATGATTATATCGAAAGTTGGATATGACAGTGTGACATTAGTTATTATTCTATCTGCGATTGTAGGCACAAATAATTTGGAGGTGGGGAAACAGATTCATGGTGCTGCTTTGAAATCAGATTTTGATTCTGTTCTTTTGGTAGCAAATAGCCTTATCAACATGTATTCTAAGGCTCGCTGTGTTCACTTTGCGAGAGAAGTATTTAATCACATGAAAGAAGTGGACCTAGTTTCATGGAACTCGATGATATCATGTTATGTGCAAAGCGGTTCAGGAGAGGAATCAGTAAACCTATTTATTGGTTTATTACGGGATGGTCTAAGACCTGATCAATTTACAATTGCAAGTATTTTAAGGGCTTGCTCCTCTCTTCAAGAAGGGTTGCATCTCAGTAAACAGGTTCATGTTCATGCAATGAAAACTGGTATTGCTGCTGACAGATTTGTTTCAACAGCTCTTATTGATGTTTATTCCAGAAGTGGAAAGATGGAGGAAGTGGAGCCCCTTTTAGAAAACAAAGTTAATTTCGATCTGGCATCTTGGAATGCATTGATGTTTGGGTACATAAAGAGTAATGACGGTCACAAAGCACTACAACTTATGAGGATGATTCATGAAGGTGGAAAGAGGGGAGACGAGATTACTTTGGCAACTGTTGCTAAGGCCACTAGTTGCCTGGTAGCGTTGGTACCGGGGAAGCAAATTCATGCTCATGTCATAAAAACAGGGTATTCAAAGGACTTATATGTTAACAGTAGTATTCTAGATATGTACATAAAATGTGGAGACATGGGAAGTGCGCACACAGTTTTCAATGACATTCCTGCACCTGATGATGTTGCGTGGACAACTCTAATCTCAGGATGTCTAGAAAATGGAGATGAAGGGCGCTCTGTGTCTATATACCATCAGATGAGGCAGTCAGGAGTTCATCCCGATGAATACACCTTAGCTACCCTCGTCAAAGCAGCCTCTTGTCTGACAGCATTGGAACAAGGGAAACAGATACATGCAGATGCAATAAAGTTGGAATATTCCTCGGACCCTTATGTTGCCACATCACTTGTTGACATGTATGCCAAGTGCGGTAATATAGGAGATGCATATCGTTTATTTAGAAGGATGGATGTCGGGAGCATTGTCCTGTGGAATGCCATGTTGGTGGGCTTTGCTCAACATGGAGACGCTGAAGAAGCACTAAATCTTCTCAGTGTCATGAAATTTAATAACATTGTGCCTGATAGAGTTACTTTCATTGGAGTTCTTTCTGCTTGCAGCCACTCTGGTTTAGTTTCTGAAGCTTATGAGCATTTTTCTTCAATGCAAAGAGATTACGGCATTGAACCTGAGATTGAGCACTACTGTTGTCTAGTCAATGCCCTTAGCTGCGCAGGGCGTGTTCAAGAGGCAGAAAAGCTGATAGCATCAATGCCATTTGAAGTTTCTGCTTCAATGTACAGAGCCCTGCTTGGTGCTTGCAGGGTTCAAGGGGACGCAGAAACAGGAAAACGAGTAGCAGAACAGCTCTTGGCTATTGAGCCAACTGACTCATTGGCTTATGTTCTCATATCCAATATGAATGCTGCTGCCAACCAGTGGGATGCTGTGAAAGACGCTCGACGAATGATGAAACAGAAGAATGTAAAGAAAGAACCAGGTTTCAGTTGGATAGATGTGAAGAACAAGGTCCATCTGTTTGTAGTAGATGATAAATCCCATCCTGAAGCCGATTTGATATACGACAAGCTGGAGGACTCGATGAAATGGATCGGCGAAGAAGGGTATGTCCCTGATACAGAGTTTGTGCTTGCTGATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1771 PAM2 PPR PPR_2 Smr

Protein Analysis

1077

Amino Acids

119.9

Weight (kDa)

6.68

Isoelectric Point (pI)

40.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 351 - 399 4.1e-08 PPR repeat family
PPR_2 PF13041 545 - 592 8.1e-07 PPR repeat family
PPR_2 PF13041 747 - 793 1.3e-08 PPR repeat family
PPR_2 PF13041 849 - 896 5.1e-09 PPR repeat family
E_motif PF20431 968 - 1028 1.7e-14 E motif
Eplus_motif PF20430 1033 - 1058 9.9e-07 E+ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1271
Acc16I TGCGCA 3 cut(s) 774, 2211, 2800
Acc36I ACCTGC 1 cut(s) 678
Acc65I GGTACC 2 cut(s) 977, 2098
AccB1I GGYRCC 2 cut(s) 977, 2098
AccB7I CCANNNNNTGG 1 cut(s) 3006
AccBSI CCGCTC 1 cut(s) 567
AccII CGCG 1 cut(s) 606
AciI CCGC 5 cut(s) 565, 570, 829, 1677, 2496
AclWI GGATC 2 cut(s) 1307, 3185
AcsI RAATTY 5 cut(s) 169, 191, 281, 2112, 2630
AcuI CTGAAG 4 cut(s) 1100, 2619, 2727, 3153
AfaI GTAC 7 cut(s) 265, 935, 979, 1973, 2100, 2183, 2867
AfiI CCNNNNNNNGG 1 cut(s) 3006
AflIII ACRYGT 2 cut(s) 1569, 2481
AhlI ACTAGT 1 cut(s) 2078
AjnI CCWGG 5 cut(s) 738, 746, 981, 2085, 3064
AjuI GAANNNNNNNTTGG 8 cut(s) 428, 460, 633, 665, 935, 967, 2552, 2584
Alw21I GWGCWC 2 cut(s) 1375, 2769
Alw26I GTCTC 5 cut(s) 358, 729, 2037, 2190, 2586
AlwI GGATC 2 cut(s) 1307, 3185
AlwNI CAGNNNCTG 1 cut(s) 14
Ama87I CYCGRG 1 cut(s) 1023
AoxI GGCC 2 cut(s) 817, 2073
ApoI RAATTY 5 cut(s) 169, 191, 281, 2112, 2630
ArsI GACNNNNNNTTYG 2 cut(s) 674, 706
Asp718I GGTACC 2 cut(s) 977, 2098
AspLEI GCGC 6 cut(s) 606, 608, 775, 2212, 2301, 2801
AspS9I GGNCC 4 cut(s) 1154, 1633, 2452, 3097
AsuC2I CCSGG 2 cut(s) 901, 2103
AsuHPI GGTGA 6 cut(s) 89, 324, 661, 736, 844, 997
AsuII TTCGAA 2 cut(s) 343, 680
AvaI CYCGRG 1 cut(s) 1023
AvaII GGWCC 4 cut(s) 1154, 1633, 2452, 3097
AxyI CCTNAGG 1 cut(s) 628
BaeI ACNNNNGTAYC 2 cut(s) 969, 1002
BanI GGYRCC 2 cut(s) 977, 2098
BanII GRGCYC 4 cut(s) 788, 1375, 1914, 2875
BauI CACGAG 1 cut(s) 1374
BbsI GAAGAC 2 cut(s) 26, 1094
Bbv12I GWGCWC 2 cut(s) 1375, 2769
BceAI ACGGC 2 cut(s) 342, 2761
BciT130I CCWGG 5 cut(s) 740, 748, 983, 2087, 3066
BclI TGATCA 3 cut(s) 90, 222, 1738
BcnI CCSGG 2 cut(s) 901, 2103
BcoDI GTCTC 5 cut(s) 358, 729, 2037, 2190, 2586
BcuI ACTAGT 1 cut(s) 2078
BfaI CTAG 7 cut(s) 297, 761, 1637, 2079, 2174, 2279, 2780
BfmI CTRYAG 1 cut(s) 416
BfoI RGCGCY 1 cut(s) 2302
BfuAI ACCTGC 1 cut(s) 678
Bme1390I CCNGG 7 cut(s) 740, 748, 901, 983, 2087, 2103, 3066
Bme18I GGWCC 4 cut(s) 1154, 1633, 2452, 3097
BmeT110I CYCGRG 1 cut(s) 1023
BmgT120I GGNCC 4 cut(s) 1154, 1633, 2452, 3097
BmiI GGNNCC 6 cut(s) 126, 979, 1155, 1911, 2100, 2454
BmrFI CCNGG 7 cut(s) 740, 748, 901, 983, 2087, 2103, 3066
BpiI GAAGAC 2 cut(s) 26, 1094
BpmI CTGGAG 1 cut(s) 3179
Bpu10I CCTNAGC 4 cut(s) 729, 2070, 2359, 2792
Bpu14I TTCGAA 2 cut(s) 343, 680
BpuMI CCSGG 2 cut(s) 901, 2103
BsaBI GATNNNNATC 2 cut(s) 1293, 2514
BsaI GGTCTC 1 cut(s) 729
BsaJI CCNNGG 6 cut(s) 128, 548, 595, 981, 2102, 2448
Bsc4I CCNNNNNNNGG 1 cut(s) 3006
Bse1I ACTGG 4 cut(s) 98, 855, 1837, 3004
Bse21I CCTNAGG 1 cut(s) 628
Bse3DI GCAATG 2 cut(s) 573, 1830
Bse8I GATNNNNATC 2 cut(s) 1293, 2514
BseBI CCWGG 5 cut(s) 740, 748, 983, 2087, 3066
BseDI CCNNGG 6 cut(s) 128, 548, 595, 981, 2102, 2448
BseJI GATNNNNATC 2 cut(s) 1293, 2514
BseLI CCNNNNNNNGG 1 cut(s) 3006
BseMI GCAATG 2 cut(s) 573, 1830
BseMII CTCAG 7 cut(s) 642, 720, 1018, 1813, 2283, 2632, 2748
BseNI ACTGG 4 cut(s) 98, 855, 1837, 3004
BsePI GCGCGC 1 cut(s) 604
BseRI GAGGAG 4 cut(s) 127, 484, 1247, 1765
BseYI CCCAGC 3 cut(s) 411, 779, 1258
BsgI GTGCAG 1 cut(s) 2220
Bsh1236I CGCG 1 cut(s) 606
BshFI GGCC 2 cut(s) 819, 2075
BshNI GGYRCC 2 cut(s) 977, 2098
BsiHKAI GWGCWC 2 cut(s) 1375, 2769
BsiHKCI CYCGRG 1 cut(s) 1023
BsiSI CCGG 3 cut(s) 826, 900, 2102
BslFI GGGAC 2 cut(s) 2915, 3182
BslI CCNNNNNNNGG 1 cut(s) 3006
BsmAI GTCTC 5 cut(s) 358, 729, 2037, 2190, 2586
BsmBI CGTCTC 2 cut(s) 2037, 2586
BsmFI GGGAC 2 cut(s) 2915, 3182
BsmI GAATGC 5 cut(s) 641, 757, 1960, 2566, 2995
BsnI GGCC 2 cut(s) 819, 2075
Bso31I GGTCTC 1 cut(s) 729
BsoBI CYCGRG 1 cut(s) 1023
Bsp119I TTCGAA 2 cut(s) 343, 680
Bsp1286I GDGCHC 5 cut(s) 788, 1375, 1914, 2769, 2875
Bsp1407I TGTACA 3 cut(s) 263, 2181, 2865
Bsp143I GATC 7 cut(s) 90, 222, 376, 1312, 1738, 1939, 3177
Bsp19I CCATGG 1 cut(s) 548
BspACI CCGC 5 cut(s) 565, 570, 829, 1677, 2496
BspANI GGCC 2 cut(s) 819, 2075
BspCNI CTCAG 7 cut(s) 641, 721, 1017, 1812, 2282, 2631, 2749
BspFNI CGCG 1 cut(s) 606
BspHI TCATGA 3 cut(s) 1105, 2023, 2625
BspLI GGNNCC 6 cut(s) 126, 979, 1155, 1911, 2100, 2454
BspMAI CTGCAG 1 cut(s) 420
BspMI ACCTGC 1 cut(s) 678
BspPI GGATC 2 cut(s) 1307, 3185
BspT104I TTCGAA 2 cut(s) 343, 680
BspT107I GGYRCC 2 cut(s) 977, 2098
BspTNI GGTCTC 1 cut(s) 729
BsrBI CCGCTC 1 cut(s) 567
BsrDI GCAATG 2 cut(s) 573, 1830
BsrGI TGTACA 3 cut(s) 263, 2181, 2865
BsrI ACTGG 4 cut(s) 98, 855, 1837, 3004
BssECI CCNNGG 6 cut(s) 128, 548, 595, 981, 2102, 2448
BssHII GCGCGC 1 cut(s) 604
BssMI GATC 7 cut(s) 90, 222, 376, 1312, 1738, 1939, 3177
BssSI CACGAG 1 cut(s) 1374
BssT1I CCWWGG 2 cut(s) 128, 548
Bst2BI CACGAG 1 cut(s) 1374
Bst2UI CCWGG 5 cut(s) 740, 748, 983, 2087, 3066
Bst4CI ACNGT 6 cut(s) 1439, 1991, 2065, 2165, 2218, 2774
Bst6I CTCTTC 4 cut(s) 488, 538, 1003, 1785
BstAPI GCANNNNNTGC 2 cut(s) 770, 2066
BstAUI TGTACA 3 cut(s) 263, 2181, 2865
BstBI TTCGAA 2 cut(s) 343, 680
BstC8I GCNNGC 9 cut(s) 602, 606, 706, 777, 1585, 1771, 2683, 2887, 3219
BstDSI CCRYGG 1 cut(s) 548
BstEII GGTNACC 1 cut(s) 742
BstFNI CGCG 1 cut(s) 606
BstH2I RGCGCY 1 cut(s) 2302
BstHHI GCGC 6 cut(s) 606, 608, 775, 2212, 2301, 2801
BstKTI GATC 7 cut(s) 93, 225, 379, 1315, 1741, 1942, 3180
BstMAI GTCTC 5 cut(s) 358, 729, 2037, 2190, 2586
BstMBI GATC 7 cut(s) 90, 222, 376, 1312, 1738, 1939, 3177
BstMWI GCNNNNNNNGC 7 cut(s) 761, 770, 892, 901, 1250, 2066, 2603
BstNI CCWGG 5 cut(s) 740, 748, 983, 2087, 3066
BstNSI RCATGY 3 cut(s) 1573, 2423, 2485
BstPI GGTNACC 1 cut(s) 742
BstSCI CCNGG 7 cut(s) 738, 746, 899, 981, 2085, 2101, 3064
BstSFI CTRYAG 1 cut(s) 416
BstUI CGCG 1 cut(s) 606
BstV2I GAAGAC 2 cut(s) 26, 1094
BstXI CCANNNNNNTGG 1 cut(s) 2572
Bsu36I CCTNAGG 1 cut(s) 628
BsuRI GGCC 2 cut(s) 819, 2075
BtgI CCRYGG 1 cut(s) 548
BtsIMutI CAGTG 4 cut(s) 1174, 1444, 2626, 3011
BveI ACCTGC 1 cut(s) 678
Cac8I GCNNGC 9 cut(s) 602, 606, 706, 777, 1585, 1771, 2683, 2887, 3219
CaiI CAGNNNCTG 1 cut(s) 14
CciI TCATGA 3 cut(s) 1105, 2023, 2625
CfoI GCGC 6 cut(s) 606, 608, 775, 2212, 2301, 2801
Cfr13I GGNCC 4 cut(s) 1154, 1633, 2452, 3097
CseI GACGC 3 cut(s) 2603, 2912, 3032
CsiI ACCWGGT 2 cut(s) 738, 3064
Csp6I GTAC 7 cut(s) 264, 934, 978, 1972, 2099, 2182, 2866
CspCI CAANNNNNGTGG 2 cut(s) 2455, 2490
CviQI GTAC 7 cut(s) 264, 934, 978, 1972, 2099, 2182, 2866
DpnI GATC 7 cut(s) 92, 224, 378, 1314, 1740, 1941, 3179
DpnII GATC 7 cut(s) 90, 222, 376, 1312, 1738, 1939, 3177
DraI TTTAAA 1 cut(s) 174
Eam1104I CTCTTC 4 cut(s) 488, 538, 1003, 1785
EarI CTCTTC 4 cut(s) 488, 538, 1003, 1785
EciI GGCGGA 1 cut(s) 559
Ecl136II GAGCTC 1 cut(s) 1373
Eco130I CCWWGG 2 cut(s) 128, 548
Eco24I GRGCYC 4 cut(s) 788, 1375, 1914, 2875
Eco31I GGTCTC 1 cut(s) 729
Eco32I GATATC 1 cut(s) 1659
Eco47I GGWCC 4 cut(s) 1154, 1633, 2452, 3097
Eco53kI GAGCTC 1 cut(s) 1373
Eco57I CTGAAG 4 cut(s) 1100, 2619, 2727, 3153
Eco81I CCTNAGG 1 cut(s) 628
Eco88I CYCGRG 1 cut(s) 1023
Eco91I GGTNACC 1 cut(s) 742
EcoICRI GAGCTC 1 cut(s) 1373
EcoO109I RGGNCCY 1 cut(s) 1154
EcoO65I GGTNACC 1 cut(s) 742
EcoRI GAATTC 1 cut(s) 191
EcoRII CCWGG 5 cut(s) 738, 746, 981, 2085, 3064
EcoRV GATATC 1 cut(s) 1659
EcoT14I CCWWGG 2 cut(s) 128, 548
EcoT22I ATGCAT 3 cut(s) 144, 1960, 2515
EcoT38I GRGCYC 4 cut(s) 788, 1375, 1914, 2875
ErhI CCWWGG 2 cut(s) 128, 548
Esp3I CGTCTC 2 cut(s) 2037, 2586
FalI AAGNNNNNCTT 6 cut(s) 179, 211, 798, 830, 1101, 1133
FaqI GGGAC 2 cut(s) 2915, 3182
FauNDI CATATG 3 cut(s) 700, 1087, 1246
FbaI TGATCA 3 cut(s) 90, 222, 1738
FriOI GRGCYC 4 cut(s) 788, 1375, 1914, 2875
FspAI RTGCGCAY 1 cut(s) 2211
FspBI CTAG 7 cut(s) 297, 761, 1637, 2079, 2174, 2279, 2780
FspI TGCGCA 3 cut(s) 774, 2211, 2800
GlaI GCGC 6 cut(s) 605, 607, 774, 2211, 2300, 2800
GsaI CCCAGC 3 cut(s) 415, 783, 1262
GsuI CTGGAG 1 cut(s) 3179
HaeII RGCGCY 1 cut(s) 2302
HaeIII GGCC 2 cut(s) 819, 2075
HapII CCGG 3 cut(s) 826, 900, 2102
HgaI GACGC 3 cut(s) 2603, 2912, 3032
HhaI GCGC 6 cut(s) 606, 608, 775, 2212, 2301, 2801
Hin6I GCGC 6 cut(s) 604, 606, 773, 2210, 2299, 2799
HinP1I GCGC 6 cut(s) 604, 606, 773, 2210, 2299, 2799
HincII GTYRAC 3 cut(s) 624, 2161, 2479
HindII GTYRAC 3 cut(s) 624, 2161, 2479
HindIII AAGCTT 1 cut(s) 2709
HinfI GANTC 9 cut(s) 407, 839, 1192, 1504, 1535, 1691, 2020, 2957, 3164
HpaI GTTAAC 2 cut(s) 624, 2161
HpaII CCGG 3 cut(s) 826, 900, 2102
HphI GGTGA 6 cut(s) 89, 324, 661, 736, 844, 997
Hpy99I CGWCG 1 cut(s) 3033
HpyAV CCTTC 9 cut(s) 271, 482, 1075, 1208, 1781, 2021, 2288, 2523, 3182
HpyCH4III ACNGT 6 cut(s) 1439, 1991, 2065, 2165, 2218, 2774
HpyF10VI GCNNNNNNNGC 7 cut(s) 761, 770, 892, 901, 1250, 2066, 2603
HspAI GCGC 6 cut(s) 604, 606, 773, 2210, 2299, 2799
KpnI GGTACC 2 cut(s) 981, 2102
Ksp22I TGATCA 3 cut(s) 90, 222, 1738
KspAI GTTAAC 2 cut(s) 624, 2161
Kzo9I GATC 7 cut(s) 90, 222, 376, 1312, 1738, 1939, 3177
LmnI GCTCC 6 cut(s) 124, 153, 572, 1778, 1909, 2544
MabI ACCWGGT 2 cut(s) 738, 3064
MaeI CTAG 7 cut(s) 297, 761, 1637, 2079, 2174, 2279, 2780
MaeIII GTNAC 6 cut(s) 77, 690, 742, 1441, 1991, 2656
MalI GATC 7 cut(s) 92, 224, 378, 1314, 1740, 1941, 3179
MbiI CCGCTC 1 cut(s) 567
MboI GATC 7 cut(s) 90, 222, 376, 1312, 1738, 1939, 3177
MfeI CAATTG 1 cut(s) 1749
MhlI GDGCHC 5 cut(s) 788, 1375, 1914, 2769, 2875
MlyI GAGTC 3 cut(s) 848, 2951, 3158
MmeI TCCRAC 8 cut(s) 454, 528, 933, 1322, 1353, 1408, 2418, 3056
Mph1103I ATGCAT 3 cut(s) 144, 1960, 2515
MslI CAYNNNNRTG 8 cut(s) 671, 1143, 1818, 2028, 2121, 2346, 2424, 2570
MspA1I CMGCKG 1 cut(s) 415
MspI CCGG 3 cut(s) 826, 900, 2102
MspR9I CCNGG 7 cut(s) 740, 748, 901, 983, 2087, 2103, 3066
MunI CAATTG 1 cut(s) 1749
Mva1269I GAATGC 5 cut(s) 641, 757, 1960, 2566, 2995
MvaI CCWGG 5 cut(s) 740, 748, 983, 2087, 3066
MvnI CGCG 1 cut(s) 606
MwoI GCNNNNNNNGC 7 cut(s) 761, 770, 892, 901, 1250, 2066, 2603
NciI CCSGG 2 cut(s) 901, 2103
NcoI CCATGG 1 cut(s) 548
NdeI CATATG 3 cut(s) 700, 1087, 1246
NdeII GATC 7 cut(s) 90, 222, 376, 1312, 1738, 1939, 3177
NlaIV GGNNCC 6 cut(s) 126, 979, 1155, 1911, 2100, 2454
NmeAIII GCCGAG 1 cut(s) 576
NmuCI GTSAC 5 cut(s) 77, 690, 742, 1441, 1991
NsbI TGCGCA 3 cut(s) 774, 2211, 2800
NsiI ATGCAT 3 cut(s) 144, 1960, 2515
NspI RCATGY 3 cut(s) 1573, 2423, 2485
NspV TTCGAA 2 cut(s) 343, 680
PagI TCATGA 3 cut(s) 1105, 2023, 2625
PauI GCGCGC 1 cut(s) 604
PciI ACATGT 2 cut(s) 1569, 2481
PctI GAATGC 5 cut(s) 641, 757, 1960, 2566, 2995
PfeI GAWTC 6 cut(s) 407, 1192, 1504, 1535, 1691, 2020
PflFI GACNNNGTC 1 cut(s) 740
PflMI CCANNNNNTGG 1 cut(s) 3006
PleI GAGTC 3 cut(s) 847, 2951, 3158
PpsI GAGTC 3 cut(s) 847, 2951, 3158
PpuMI RGGWCCY 1 cut(s) 1154
PscI ACATGT 2 cut(s) 1569, 2481
PsiI TTATAA 1 cut(s) 1271
Psp124BI GAGCTC 1 cut(s) 1375
Psp5II RGGWCCY 1 cut(s) 1154
Psp6I CCWGG 5 cut(s) 738, 746, 981, 2085, 3064
PspEI GGTNACC 1 cut(s) 742
PspFI CCCAGC 3 cut(s) 411, 779, 1258
PspGI CCWGG 5 cut(s) 738, 746, 981, 2085, 3064
PspN4I GGNNCC 6 cut(s) 126, 979, 1155, 1911, 2100, 2454
PspPI GGNCC 4 cut(s) 1154, 1633, 2452, 3097
PspPPI RGGWCCY 1 cut(s) 1154
PstI CTGCAG 1 cut(s) 420
PstNI CAGNNNCTG 1 cut(s) 14
PsyI GACNNNGTC 1 cut(s) 740
PteI GCGCGC 1 cut(s) 604
PvuII CAGCTG 1 cut(s) 415
RsaI GTAC 7 cut(s) 265, 935, 979, 1973, 2100, 2183, 2867
RsaNI GTAC 7 cut(s) 264, 934, 978, 1972, 2099, 2182, 2866
RseI CAYNNNNRTG 8 cut(s) 671, 1143, 1818, 2028, 2121, 2346, 2424, 2570
SacI GAGCTC 1 cut(s) 1375
Sau3AI GATC 7 cut(s) 90, 222, 376, 1312, 1738, 1939, 3177
Sau96I GGNCC 4 cut(s) 1154, 1633, 2452, 3097
SchI GAGTC 3 cut(s) 848, 2951, 3158
ScrFI CCNGG 7 cut(s) 740, 748, 901, 983, 2087, 2103, 3066
SduI GDGCHC 5 cut(s) 788, 1375, 1914, 2769, 2875
SexAI ACCWGGT 2 cut(s) 738, 3064
SfcI CTRYAG 1 cut(s) 416
SfuI TTCGAA 2 cut(s) 343, 680
SinI GGWCC 4 cut(s) 1154, 1633, 2452, 3097
SmiMI CAYNNNNRTG 8 cut(s) 671, 1143, 1818, 2028, 2121, 2346, 2424, 2570
SpeI ACTAGT 1 cut(s) 2078
SsiI CCGC 5 cut(s) 565, 570, 829, 1677, 2496
SspI AATATT 1 cut(s) 2444
SspMI CTAG 7 cut(s) 297, 761, 1637, 2079, 2174, 2279, 2780
SstI GAGCTC 1 cut(s) 1375
StyD4I CCNGG 7 cut(s) 738, 746, 899, 981, 2085, 2101, 3064
StyI CCWWGG 2 cut(s) 128, 548
TaaI ACNGT 6 cut(s) 1439, 1991, 2065, 2165, 2218, 2774
TaqI TCGA 9 cut(s) 343, 680, 717, 1240, 1421, 1652, 1938, 3028, 3167
TatI WGTACW 3 cut(s) 263, 2181, 2865
TauI GCSGC 1 cut(s) 832
TfiI GAWTC 6 cut(s) 407, 1192, 1504, 1535, 1691, 2020
TscAI CASTG 4 cut(s) 1174, 1444, 2626, 3011
TseFI GTSAC 5 cut(s) 77, 690, 742, 1441, 1991
Tsp45I GTSAC 5 cut(s) 77, 690, 742, 1441, 1991
TspGWI ACGGA 1 cut(s) 865
TspRI CASTG 4 cut(s) 1174, 1444, 2626, 3011
Tth111I GACNNNGTC 1 cut(s) 740
Van91I CCANNNNNTGG 1 cut(s) 3006
VpaK11BI GGWCC 4 cut(s) 1154, 1633, 2452, 3097
XapI RAATTY 5 cut(s) 169, 191, 281, 2112, 2630
XbaI TCTAGA 2 cut(s) 2173, 2278
XceI RCATGY 3 cut(s) 1573, 2423, 2485
XcmI CCANNNNNNNNNTGG 3 cut(s) 105, 2083, 3072
XspI CTAG 7 cut(s) 297, 761, 1637, 2079, 2174, 2279, 2780
Zsp2I ATGCAT 3 cut(s) 144, 1960, 2515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.