Rw6G044340

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0007813
Physical Location & Seq
Forward (+)
67453430 .. 67456249
2820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G044340.1

Sequence Viewer

Length: 2820 bp
ATGCGGCTGCAGAACAATCTCCGACCCAAATCAATTTTCTTGTCCACCAAAAACCCCAAAACCCTTCTCCCTCTCTTCAATTTCTCCTCTCTCTCCAACCCCATCTCTCACTCGCAACCCTCTTCTTCATCTTCTCCATGGTTCTCTATCCTCCGCTCCGCCGTTGCCAATACAGACTTGGCCCTCGGCAAGCGCGCCCACGCCCTTATGTTAACCTCAGGGGAATGCCAAGACCATTTTCTAATCAACAATCTCATCACCGTGTATTCGAAATGCAGGTCGCTCACGTATGCACGCCATCTGTTCGATAAAAGTCCTGACCGAGACCTGGTCACCTGGAATGCCATTCTAGCAGCCTATGCGCAAGCTGGGGGCTCTGTGGTTGAGAATGTTCAAGAGGGGCTTGGCCTTTTCCGGCGGCTTCGCGAGTCTGTTGTGTTCACCAGTCGGCACACTTTGGCTTCCGTTTTGAAGCTGTGTTTGCTGTCGGGGCGTGTTTGGATTTCGGAGGCTGTTCAGGGTTACTCTGTGAAAGTTGGGTTGGAGTGGGATGTGTTTGTTTCGGGTACTCTGGTGAATGTGTATTGTAAACTCAGAAGAGTTAAGGAGGCTCGGGCTTTGTTTGATGGGATGCTGGAAAGGGATGTTGTGTTGTGGAACACAATGCTGAAGGCATATGTGGAAATGGGTCTTCATGAAGAAGCACTTGCTCTTTTCTCCAAGTTTCATCGAAGTGGATTAGGTCCTGACCATGTTAGTGTGCGTTGTGTTCTTAGCGGGATTCACAAAGTTGATTATGTTGAAGGCAAGAGGTACATGGAGGAGGTTCAAGCATATGCAGCAAAGCTGGGGGAGTTTATAACTAATGTGGATGATGATGCCCATCCAACGAGTTTATGTGATCCTACTACTAATTCCGACGTATTTCTGTGGAACAAGACATTGTCCAAGTATATCCGAGCTGGTGAAAATTGGGCTGCGATAGAGTTCTTTAGAAATATGATTATATTGAAAGTTGGATATGACAGTGTGACATTAGTTATCATTCTATCTGCGATTGTAGACACAAATAATTTGGAGGTGGGGAAACAGATTCATGGTGCTGCTTTGAAATCAGATTTTGATTCTGTTCTTTTGGTAGCAAATAGCCTTATCAACATGTATTCAAAGGCTCGCTGTGTTCACTTTGCAAGAGAAGTATTCAATCACATGAAAGAAGTGGACCTAGTTTCATGGAACTCGATGATATCATGTTATGTGCAAAGCGGTTCAGGAGAGGAATCAGTAAACCTATTTATTGGTTTATTACGGGATGGTCTAAGACCTGATCAATTTACAATTGCAAGTATTTTAAGGGCTTGCTCCTCCCTTCAAGAAGGGTTGCATCTCAGTAAACAGGTTCATGTTCATGCAATAAAAACTGGTATTGCTGCTGACAGATTTGTTTCAACAGCTCTTATTGATGTTTATTCCAGAAGTGGAAAGATGGAGGAAGTGGAGCCCCTTTTAGAAAACAAAGTTAATTTCGATCTGGCATCTTGGAATGCATTGATGTTTGGGTACATAAAGAGTAATGACGGTCACAAAGCACTACAACTTATGAGGATGATTCATGAAGGTGGAAAGAGGGGAGACGAGATTACTTTGGCAACTGTTGCCAAGGCCACTAGTTGCCTGGTAGCGTTGGTACCGGGGAAGCAAATTCATGCTCATGTCATAAAAACAGGGTATTCAAAGGACTTATATGTTAACAGCAGTATTCTAGATATGTACATAAAATGTGGAGACATGGGAAGTGCGCACACAGTTTTCAATGACATTCCTGCACCTGATGATGTTGCGTGGACAACTCTAATCTCAGGATGTCTAGAAAATGGAGATGAAGGGCGCTCTGTGTCTATATACCATCAGATGAGGCAGTCAGGAGTTCATCCCGATGAATACACCTTAGCTACCCTCGTCAAAGCCGCCTCTTGTCTGACAGCATTGGAACAAGGGAAACAGATACATGCAGATGCAATAAAGTTGGAATATTCCTCAGACCCTTATGTTGCGACATCACTTGTTGACATGTATGCCAAGTGCGGTAATATAGAAGATGCATATCGTTTATTTAGAAGGATGGATGTCGGGAGCATTGTCCTGTGGAATGCCATGTTGGTGGGCTTTGCTCAACATGGAGACGCTGAAGAAGCACTAAATCTTTTCAGAGTCATGAAATCTAATAACATTTTGCCTGATAGAGTTACTTTCAGTGGAGTTCTTTCTGCTTGCAGCCACTCTGGTTTAGTTTCTGAAGCTTACGAGCATTTTTCTTCAATGCAAAGAGATTACGACATTGAACCTGAGATTGAGCACTACTCTTGTCTAGTCAATGCCCTTAGCCGTGCAGGGCGTGTTCAAGAGGCAGAAAAGCTGATAGCATCAATGCCATTTAAAGCTTCTGCTTCAATGTACAGAGCCCTGCTTGGTGCTTGCAGGGTTCAAGGGGACACAGAAACAGGAAAACGAGTAGCAGAACAGCTCTTGGCTATTGAGCCAACTGACTCATTGGCTTATGTTCTCATATCCAATATGAATGCCGCTGCCAACCAGTGGGATGCTGTGAAAGATGCTCGACGAATGATGAAACAGAAGAATGTAAAGAAAGAACCAGGTTTCAGTTGGATAGATGTGAAGAACAAGGTCCATTTGTTTCTGGTAGATGATAAATCCCATCCTGAAGCCGATTTAATATACGACAAATTGGAGGACTTGATGAGATGGATCGGCGAAGAAGGGTATGTCCCTGATACAGAGTTTGTGCTTGCTGATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1771 PAM2 PPR PPR_2 Smr

Protein Analysis

939

Amino Acids

104.51

Weight (kDa)

6.22

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 214 - 261 4.9e-08 PPR repeat family
PPR_2 PF13041 408 - 455 6.9e-07 PPR repeat family
PPR_2 PF13041 610 - 656 1.1e-08 PPR repeat family
PPR_2 PF13041 712 - 759 2e-11 PPR repeat family
PPR PF01535 714 - 744 1.5e-06 PPR repeat
TPR_24 PF23276 717 - 806 5.1e-06 Fungal tetratrico peptide repeats
E_motif PF20431 831 - 891 1.3e-14 E motif
Eplus_motif PF20430 896 - 921 3.9e-08 E+ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 860
Acc16I TGCGCA 2 cut(s) 363, 1800
Acc36I ACCTGC 1 cut(s) 267
Acc65I GGTACC 1 cut(s) 1687
AccB1I GGYRCC 1 cut(s) 1687
AccB7I CCANNNNNTGG 1 cut(s) 2595
AccBSI CCGCTC 1 cut(s) 156
AccI GTMKAC 1 cut(s) 1062
AccII CGCG 2 cut(s) 195, 426
AciI CCGC 9 cut(s) 4, 154, 159, 418, 777, 1266, 1968, 2085, 2583
AclWI GGATC 2 cut(s) 896, 2774
AcsI RAATTY 1 cut(s) 1701
AcuI CTGAAG 4 cut(s) 689, 2208, 2316, 2742
AfaI GTAC 6 cut(s) 568, 815, 1562, 1689, 1772, 2456
AfiI CCNNNNNNNGG 2 cut(s) 328, 2595
AflIII ACRYGT 2 cut(s) 1158, 2070
AhlI ACTAGT 1 cut(s) 1667
AjnI CCWGG 4 cut(s) 327, 335, 1674, 2653
AjuI GAANNNNNNNTTGG 8 cut(s) 20, 52, 222, 254, 524, 556, 2141, 2173
Alw21I GWGCWC 1 cut(s) 2358
Alw26I GTCTC 4 cut(s) 318, 1626, 1779, 2175
AlwI GGATC 2 cut(s) 896, 2774
Ama87I CYCGRG 1 cut(s) 612
AoxI GGCC 3 cut(s) 180, 406, 1662
ApeKI GCWGC 8 cut(s) 7, 353, 839, 977, 1103, 1430, 2274, 2585
ApoI RAATTY 1 cut(s) 1701
ArsI GACNNNNNNTTYG 2 cut(s) 263, 295
Asp718I GGTACC 1 cut(s) 1687
AspLEI GCGC 5 cut(s) 195, 197, 364, 1801, 1890
AspS9I GGNCC 4 cut(s) 181, 743, 1222, 2686
AsuC2I CCSGG 1 cut(s) 1692
AsuHPI GGTGA 5 cut(s) 250, 325, 433, 586, 977
AsuII TTCGAA 1 cut(s) 269
AvaI CYCGRG 1 cut(s) 612
AvaII GGWCC 3 cut(s) 743, 1222, 2686
AxyI CCTNAGG 1 cut(s) 217
BaeI ACNNNNGTAYC 2 cut(s) 558, 591
BanI GGYRCC 1 cut(s) 1687
BanII GRGCYC 3 cut(s) 377, 1503, 2464
BbsI GAAGAC 1 cut(s) 683
Bbv12I GWGCWC 1 cut(s) 2358
BbvI GCAGC 7 cut(s) 365, 851, 964, 1090, 1417, 2286, 2572
BceAI ACGGC 2 cut(s) 146, 2370
BciT130I CCWGG 4 cut(s) 329, 337, 1676, 2655
BclI TGATCA 1 cut(s) 1327
BcnI CCSGG 1 cut(s) 1692
BcoDI GTCTC 4 cut(s) 318, 1626, 1779, 2175
BcuI ACTAGT 1 cut(s) 1667
BfaI CTAG 6 cut(s) 350, 1226, 1668, 1763, 1868, 2369
BfmI CTRYAG 1 cut(s) 8
BfoI RGCGCY 1 cut(s) 1891
BfuAI ACCTGC 1 cut(s) 267
Bme1390I CCNGG 5 cut(s) 329, 337, 1676, 1692, 2655
Bme18I GGWCC 3 cut(s) 743, 1222, 2686
BmeT110I CYCGRG 1 cut(s) 612
BmgT120I GGNCC 4 cut(s) 181, 743, 1222, 2686
BmiI GGNNCC 2 cut(s) 1500, 1689
BmrFI CCNGG 5 cut(s) 329, 337, 1676, 1692, 2655
BmsI GCATC 9 cut(s) 621, 868, 1393, 1544, 2005, 2089, 2432, 2590, 2602
BpiI GAAGAC 1 cut(s) 683
BplI GAGNNNNNCTC 2 cut(s) 2345, 2377
Bpu10I CCTNAGC 2 cut(s) 1948, 2381
Bpu14I TTCGAA 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 1692
BsaAI YACGTR 1 cut(s) 288
BsaBI GATNNNNATC 2 cut(s) 882, 2103
BsaI GGTCTC 1 cut(s) 318
BsaJI CCNNGG 4 cut(s) 137, 184, 1659, 1691
Bsc4I CCNNNNNNNGG 2 cut(s) 328, 2595
Bse1I ACTGG 3 cut(s) 444, 1426, 2593
Bse21I CCTNAGG 1 cut(s) 217
Bse8I GATNNNNATC 2 cut(s) 882, 2103
BseBI CCWGG 4 cut(s) 329, 337, 1676, 2655
BseDI CCNNGG 4 cut(s) 137, 184, 1659, 1691
BseJI GATNNNNATC 2 cut(s) 882, 2103
BseLI CCNNNNNNNGG 2 cut(s) 328, 2595
BseMII CTCAG 6 cut(s) 231, 607, 1402, 1872, 2052, 2337
BseNI ACTGG 3 cut(s) 444, 1426, 2593
BsePI GCGCGC 1 cut(s) 193
BseRI GAGGAG 3 cut(s) 76, 836, 1354
BseXI GCAGC 7 cut(s) 365, 851, 964, 1090, 1417, 2286, 2572
BseYI CCCAGC 2 cut(s) 368, 847
BsgI GTGCAG 2 cut(s) 1809, 2409
Bsh1236I CGCG 2 cut(s) 195, 426
BshFI GGCC 3 cut(s) 182, 408, 1664
BshNI GGYRCC 1 cut(s) 1687
BsiHKAI GWGCWC 1 cut(s) 2358
BsiHKCI CYCGRG 1 cut(s) 612
BsiSI CCGG 2 cut(s) 415, 1691
BslFI GGGAC 2 cut(s) 2504, 2771
BslI CCNNNNNNNGG 2 cut(s) 328, 2595
BsmAI GTCTC 4 cut(s) 318, 1626, 1779, 2175
BsmBI CGTCTC 2 cut(s) 1626, 2175
BsmFI GGGAC 2 cut(s) 2504, 2771
BsmI GAATGC 5 cut(s) 230, 346, 1549, 2155, 2584
BsnI GGCC 3 cut(s) 182, 408, 1664
Bso31I GGTCTC 1 cut(s) 318
BsoBI CYCGRG 1 cut(s) 612
Bsp119I TTCGAA 1 cut(s) 269
Bsp1286I GDGCHC 4 cut(s) 377, 1503, 2358, 2464
Bsp1407I TGTACA 2 cut(s) 1770, 2454
Bsp143I GATC 4 cut(s) 901, 1327, 1528, 2766
Bsp19I CCATGG 1 cut(s) 137
Bsp68I TCGCGA 1 cut(s) 426
BspACI CCGC 9 cut(s) 4, 154, 159, 418, 777, 1266, 1968, 2085, 2583
BspANI GGCC 3 cut(s) 182, 408, 1664
BspCNI CTCAG 6 cut(s) 230, 606, 1401, 1871, 2051, 2338
BspFNI CGCG 2 cut(s) 195, 426
BspHI TCATGA 3 cut(s) 694, 1612, 2214
BspLI GGNNCC 2 cut(s) 1500, 1689
BspMAI CTGCAG 1 cut(s) 12
BspMI ACCTGC 1 cut(s) 267
BspPI GGATC 2 cut(s) 896, 2774
BspT104I TTCGAA 1 cut(s) 269
BspT107I GGYRCC 1 cut(s) 1687
BspTNI GGTCTC 1 cut(s) 318
BsrBI CCGCTC 1 cut(s) 156
BsrGI TGTACA 2 cut(s) 1770, 2454
BsrI ACTGG 3 cut(s) 444, 1426, 2593
BssECI CCNNGG 4 cut(s) 137, 184, 1659, 1691
BssHII GCGCGC 1 cut(s) 193
BssMI GATC 4 cut(s) 901, 1327, 1528, 2766
BssT1I CCWWGG 2 cut(s) 137, 1659
Bst2UI CCWGG 4 cut(s) 329, 337, 1676, 2655
Bst4CI ACNGT 5 cut(s) 262, 1028, 1580, 1654, 1807
Bst6I CTCTTC 3 cut(s) 80, 127, 592
BstAPI GCANNNNNTGC 2 cut(s) 359, 1655
BstAUI TGTACA 2 cut(s) 1770, 2454
BstBAI YACGTR 1 cut(s) 288
BstBI TTCGAA 1 cut(s) 269
BstC8I GCNNGC 9 cut(s) 191, 195, 295, 366, 1174, 1360, 2272, 2476, 2808
BstDSI CCRYGG 1 cut(s) 137
BstEII GGTNACC 1 cut(s) 331
BstFNI CGCG 2 cut(s) 195, 426
BstH2I RGCGCY 1 cut(s) 1891
BstHHI GCGC 5 cut(s) 195, 197, 364, 1801, 1890
BstKTI GATC 4 cut(s) 904, 1330, 1531, 2769
BstMAI GTCTC 4 cut(s) 318, 1626, 1779, 2175
BstMBI GATC 4 cut(s) 901, 1327, 1528, 2766
BstMWI GCNNNNNNNGC 7 cut(s) 350, 359, 481, 490, 839, 1655, 2192
BstNI CCWGG 4 cut(s) 329, 337, 1676, 2655
BstNSI RCATGY 3 cut(s) 1162, 2012, 2074
BstPI GGTNACC 1 cut(s) 331
BstSCI CCNGG 5 cut(s) 327, 335, 1674, 1690, 2653
BstSFI CTRYAG 1 cut(s) 8
BstUI CGCG 2 cut(s) 195, 426
BstV1I GCAGC 7 cut(s) 365, 851, 964, 1090, 1417, 2286, 2572
BstV2I GAAGAC 1 cut(s) 683
BstXI CCANNNNNNTGG 1 cut(s) 2161
Bsu36I CCTNAGG 1 cut(s) 217
BsuRI GGCC 3 cut(s) 182, 408, 1664
BtgI CCRYGG 1 cut(s) 137
BtsIMutI CAGTG 3 cut(s) 1033, 2260, 2600
BtuMI TCGCGA 1 cut(s) 426
BveI ACCTGC 1 cut(s) 267
Cac8I GCNNGC 9 cut(s) 191, 195, 295, 366, 1174, 1360, 2272, 2476, 2808
CciI TCATGA 3 cut(s) 694, 1612, 2214
CfoI GCGC 5 cut(s) 195, 197, 364, 1801, 1890
Cfr13I GGNCC 4 cut(s) 181, 743, 1222, 2686
CseI GACGC 1 cut(s) 2192
CsiI ACCWGGT 2 cut(s) 327, 2653
Csp6I GTAC 6 cut(s) 567, 814, 1561, 1688, 1771, 2455
CviQI GTAC 6 cut(s) 567, 814, 1561, 1688, 1771, 2455
DpnI GATC 4 cut(s) 903, 1329, 1530, 2768
DpnII GATC 4 cut(s) 901, 1327, 1528, 2766
DraI TTTAAA 1 cut(s) 2437
Eam1104I CTCTTC 3 cut(s) 80, 127, 592
EarI CTCTTC 3 cut(s) 80, 127, 592
EciI GGCGGA 1 cut(s) 148
Eco130I CCWWGG 2 cut(s) 137, 1659
Eco24I GRGCYC 3 cut(s) 377, 1503, 2464
Eco31I GGTCTC 1 cut(s) 318
Eco32I GATATC 1 cut(s) 1248
Eco47I GGWCC 3 cut(s) 743, 1222, 2686
Eco57I CTGAAG 4 cut(s) 689, 2208, 2316, 2742
Eco81I CCTNAGG 1 cut(s) 217
Eco88I CYCGRG 1 cut(s) 612
Eco91I GGTNACC 1 cut(s) 331
EcoO109I RGGNCCY 1 cut(s) 743
EcoO65I GGTNACC 1 cut(s) 331
EcoRII CCWGG 4 cut(s) 327, 335, 1674, 2653
EcoRV GATATC 1 cut(s) 1248
EcoT14I CCWWGG 2 cut(s) 137, 1659
EcoT22I ATGCAT 2 cut(s) 1549, 2104
EcoT38I GRGCYC 3 cut(s) 377, 1503, 2464
ErhI CCWWGG 2 cut(s) 137, 1659
Esp3I CGTCTC 2 cut(s) 1626, 2175
FalI AAGNNNNNCTT 4 cut(s) 387, 419, 690, 722
FaqI GGGAC 2 cut(s) 2504, 2771
FauI CCCGC 1 cut(s) 770
FauNDI CATATG 2 cut(s) 676, 835
FbaI TGATCA 1 cut(s) 1327
FblI GTMKAC 1 cut(s) 1062
FriOI GRGCYC 3 cut(s) 377, 1503, 2464
FspAI RTGCGCAY 1 cut(s) 1800
FspBI CTAG 6 cut(s) 350, 1226, 1668, 1763, 1868, 2369
FspI TGCGCA 2 cut(s) 363, 1800
GlaI GCGC 5 cut(s) 194, 196, 363, 1800, 1889
GsaI CCCAGC 2 cut(s) 372, 851
HaeII RGCGCY 1 cut(s) 1891
HaeIII GGCC 3 cut(s) 182, 408, 1664
HapII CCGG 2 cut(s) 415, 1691
HgaI GACGC 1 cut(s) 2192
HhaI GCGC 5 cut(s) 195, 197, 364, 1801, 1890
Hin6I GCGC 5 cut(s) 193, 195, 362, 1799, 1888
HinP1I GCGC 5 cut(s) 193, 195, 362, 1799, 1888
HincII GTYRAC 3 cut(s) 213, 1750, 2068
HindII GTYRAC 3 cut(s) 213, 1750, 2068
HindIII AAGCTT 2 cut(s) 2298, 2439
HinfI GANTC 8 cut(s) 428, 781, 1093, 1124, 1280, 1609, 2211, 2546
HpaI GTTAAC 2 cut(s) 213, 1750
HpaII CCGG 2 cut(s) 415, 1691
HphI GGTGA 5 cut(s) 250, 325, 433, 586, 977
Hpy99I CGWCG 2 cut(s) 923, 2622
HpyAV CCTTC 9 cut(s) 74, 664, 797, 1370, 1379, 1610, 1877, 2112, 2771
HpyCH4III ACNGT 5 cut(s) 262, 1028, 1580, 1654, 1807
HpyCH4IV ACGT 2 cut(s) 287, 921
HpyF10VI GCNNNNNNNGC 7 cut(s) 350, 359, 481, 490, 839, 1655, 2192
HpySE526I ACGT 2 cut(s) 287, 921
HspAI GCGC 5 cut(s) 193, 195, 362, 1799, 1888
KpnI GGTACC 1 cut(s) 1691
Ksp22I TGATCA 1 cut(s) 1327
KspAI GTTAAC 2 cut(s) 213, 1750
Kzo9I GATC 4 cut(s) 901, 1327, 1528, 2766
LmnI GCTCC 4 cut(s) 161, 1367, 1498, 2133
Lsp1109I GCAGC 7 cut(s) 365, 851, 964, 1090, 1417, 2286, 2572
LweI GCATC 9 cut(s) 621, 868, 1393, 1544, 2005, 2089, 2432, 2590, 2602
MabI ACCWGGT 2 cut(s) 327, 2653
MaeI CTAG 6 cut(s) 350, 1226, 1668, 1763, 1868, 2369
MaeII ACGT 2 cut(s) 287, 921
MaeIII GTNAC 5 cut(s) 331, 521, 1030, 1580, 2245
MalI GATC 4 cut(s) 903, 1329, 1530, 2768
MbiI CCGCTC 1 cut(s) 156
MboI GATC 4 cut(s) 901, 1327, 1528, 2766
MfeI CAATTG 1 cut(s) 1338
MhlI GDGCHC 4 cut(s) 377, 1503, 2358, 2464
MlyI GAGTC 3 cut(s) 437, 2220, 2540
MmeI TCCRAC 8 cut(s) 46, 120, 522, 911, 942, 997, 2007, 2645
Mph1103I ATGCAT 2 cut(s) 1549, 2104
MseI TTAA 8 cut(s) 212, 603, 1352, 1521, 1749, 2436, 2732, 2818
MslI CAYNNNNRTG 9 cut(s) 260, 732, 756, 1407, 1617, 1710, 1935, 2013, 2159
MspA1I CMGCKG 1 cut(s) 2585
MspI CCGG 2 cut(s) 415, 1691
MspR9I CCNGG 5 cut(s) 329, 337, 1676, 1692, 2655
MunI CAATTG 1 cut(s) 1338
Mva1269I GAATGC 5 cut(s) 230, 346, 1549, 2155, 2584
MvaI CCWGG 4 cut(s) 329, 337, 1676, 2655
MvnI CGCG 2 cut(s) 195, 426
MwoI GCNNNNNNNGC 7 cut(s) 350, 359, 481, 490, 839, 1655, 2192
NciI CCSGG 1 cut(s) 1692
NcoI CCATGG 1 cut(s) 137
NdeI CATATG 2 cut(s) 676, 835
NdeII GATC 4 cut(s) 901, 1327, 1528, 2766
NlaIV GGNNCC 2 cut(s) 1500, 1689
NmeAIII GCCGAG 1 cut(s) 165
NmuCI GTSAC 3 cut(s) 331, 1030, 1580
NruI TCGCGA 1 cut(s) 426
NsbI TGCGCA 2 cut(s) 363, 1800
NsiI ATGCAT 2 cut(s) 1549, 2104
NspI RCATGY 3 cut(s) 1162, 2012, 2074
NspV TTCGAA 1 cut(s) 269
PagI TCATGA 3 cut(s) 694, 1612, 2214
PauI GCGCGC 1 cut(s) 193
PciI ACATGT 2 cut(s) 1158, 2070
PctI GAATGC 5 cut(s) 230, 346, 1549, 2155, 2584
PfeI GAWTC 5 cut(s) 781, 1093, 1124, 1280, 1609
PflFI GACNNNGTC 2 cut(s) 329, 943
PflMI CCANNNNNTGG 1 cut(s) 2595
PleI GAGTC 3 cut(s) 436, 2219, 2540
PpsI GAGTC 3 cut(s) 436, 2219, 2540
Ppu21I YACGTR 1 cut(s) 288
PpuMI RGGWCCY 1 cut(s) 743
PscI ACATGT 2 cut(s) 1158, 2070
PsiI TTATAA 1 cut(s) 860
Psp5II RGGWCCY 1 cut(s) 743
Psp6I CCWGG 4 cut(s) 327, 335, 1674, 2653
PspEI GGTNACC 1 cut(s) 331
PspFI CCCAGC 2 cut(s) 368, 847
PspGI CCWGG 4 cut(s) 327, 335, 1674, 2653
PspN4I GGNNCC 2 cut(s) 1500, 1689
PspPI GGNCC 4 cut(s) 181, 743, 1222, 2686
PspPPI RGGWCCY 1 cut(s) 743
PstI CTGCAG 1 cut(s) 12
PsyI GACNNNGTC 2 cut(s) 329, 943
PteI GCGCGC 1 cut(s) 193
RruI TCGCGA 1 cut(s) 426
RsaI GTAC 6 cut(s) 568, 815, 1562, 1689, 1772, 2456
RsaNI GTAC 6 cut(s) 567, 814, 1561, 1688, 1771, 2455
RseI CAYNNNNRTG 9 cut(s) 260, 732, 756, 1407, 1617, 1710, 1935, 2013, 2159
SaqAI TTAA 8 cut(s) 212, 603, 1352, 1521, 1749, 2436, 2732, 2818
Sau3AI GATC 4 cut(s) 901, 1327, 1528, 2766
Sau96I GGNCC 4 cut(s) 181, 743, 1222, 2686
SchI GAGTC 3 cut(s) 437, 2220, 2540
ScrFI CCNGG 5 cut(s) 329, 337, 1676, 1692, 2655
SduI GDGCHC 4 cut(s) 377, 1503, 2358, 2464
SexAI ACCWGGT 2 cut(s) 327, 2653
SfaNI GCATC 9 cut(s) 621, 868, 1393, 1544, 2005, 2089, 2432, 2590, 2602
SfcI CTRYAG 1 cut(s) 8
SfuI TTCGAA 1 cut(s) 269
SinI GGWCC 3 cut(s) 743, 1222, 2686
SmiMI CAYNNNNRTG 9 cut(s) 260, 732, 756, 1407, 1617, 1710, 1935, 2013, 2159
SpeI ACTAGT 1 cut(s) 1667
SsiI CCGC 9 cut(s) 4, 154, 159, 418, 777, 1266, 1968, 2085, 2583
SspI AATATT 1 cut(s) 2033
SspMI CTAG 6 cut(s) 350, 1226, 1668, 1763, 1868, 2369
StyD4I CCNGG 5 cut(s) 327, 335, 1674, 1690, 2653
StyI CCWWGG 2 cut(s) 137, 1659
TaaI ACNGT 5 cut(s) 262, 1028, 1580, 1654, 1807
TaiI ACGT 2 cut(s) 290, 924
TaqI TCGA 6 cut(s) 269, 306, 730, 1241, 1527, 2617
TaqII GACCGA 1 cut(s) 336
TatI WGTACW 2 cut(s) 1770, 2454
TauI GCSGC 4 cut(s) 7, 421, 1970, 2585
TfiI GAWTC 5 cut(s) 781, 1093, 1124, 1280, 1609
Tru1I TTAA 8 cut(s) 212, 603, 1352, 1521, 1749, 2436, 2732, 2818
Tru9I TTAA 8 cut(s) 212, 603, 1352, 1521, 1749, 2436, 2732, 2818
TscAI CASTG 3 cut(s) 1033, 2260, 2600
TseFI GTSAC 3 cut(s) 331, 1030, 1580
TseI GCWGC 8 cut(s) 7, 353, 839, 977, 1103, 1430, 2274, 2585
Tsp45I GTSAC 3 cut(s) 331, 1030, 1580
TspGWI ACGGA 1 cut(s) 454
TspRI CASTG 3 cut(s) 1033, 2260, 2600
Tth111I GACNNNGTC 2 cut(s) 329, 943
Van91I CCANNNNNTGG 1 cut(s) 2595
VpaK11BI GGWCC 3 cut(s) 743, 1222, 2686
XapI RAATTY 1 cut(s) 1701
XbaI TCTAGA 2 cut(s) 1762, 1867
XceI RCATGY 3 cut(s) 1162, 2012, 2074
XcmI CCANNNNNNNNNTGG 3 cut(s) 175, 1672, 2661
XmiI GTMKAC 1 cut(s) 1062
XspI CTAG 6 cut(s) 350, 1226, 1668, 1763, 1868, 2369
Zsp2I ATGCAT 2 cut(s) 1549, 2104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.