Rh6CG526400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0007813
Physical Location & Seq
Forward (+)
68096879 .. 68098606
1728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG526400.1

Sequence Viewer

Length: 1134 bp
ATGTATTACTATGTTTTTTGTTTATATAAAGGCTTGCTCTTTACATGTCCATTATTGATACCAAACATACTGCTAGAATTTATGGATCAGGTGTCTCATCCACAATGGACTGTGAAGATCAAATATCAGAACTCGAAAGCATTTTGGATTCCCAGGTCGCTCACATATGCACGCCATCTGTTCGATAAAAGTCCTGACCGAGACCTAGTCACCTGGAATGCCATTCTAGCAGCCTATGCGCAAGCTGGGGGCTCTGTGGTTGAGAATGTTCAAGAGGGACTTGGCCTTTTCCAGCGGCTTCGTGAGTCTGTTGTGTTCACCAGTCGGCACACTTTGGCTTCCGTTTTGAAGTTGTGTTTGCTGTCAGGGCGTGTTTGGATTTCGGAGGCTGTTCAGGGTTATGCTGTGAAAATTGGGTTGGAGTGGGATGTGTTTGTTTCGGGTACCCTGGTGAATGTGTATTGTAAACTCAGAAGAGTTAAGGAGGCTCGGGCTTTGTTTGATGGGATGCTCGAATGGGATGTTGTGTTGTGGAACACAATGCTGAAGGCATATGTGGAAATGGGTCTTCATGAAGAAGCACTTTCTCTTCTCTCCAAGTTTCATCAAAGTGGATTAGGTCCTGACCATGTTAGTGTGTGTTGTGTTCTTAGTGGGATTCACAAAGTTGATTATGTTGAAGGCAAGAGGCACATGAAGGAGGTTCGAGCATATGCAGCAAAGCTGGGGGAGTTTTTAACTAATGTGGATGATGATGCCCACCCAACGAGTTTATGTGATCCTACTACTAATTCCGACATATCTCTGTGGAACAAGAAGTTGTCTAAGTATATCCGAGCTGGTGAAAACTGGGTTGCAATAGATTGCTTTAGAAATATGATTATATCGAAAGTTGGATATGACAGTGTGACATTAGTTATCATTCTATCTGCGATTGTAGGCACAAATAATTTGGAGGTGGGGAAACAGATTCATGGTGCTGCTTTGAAATCAGATTTTGATTCTGTTCTTTTGGTAGCAAATAGCCTTATCAACATGTATTCAAAGGCTCGCTGTGTTCACTTTGTGAGAGAGGTATTCAATCACATGAAAGAAGTGGACCTAGTTTCATGGAACTCGATGATATCATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1771 PAM2 PPR PPR_2 Smr

Protein Analysis

377

Amino Acids

42.66

Weight (kDa)

7.98

Isoelectric Point (pI)

25.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 174 - 220 2.2e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 240
Acc65I GGTACC 1 cut(s) 443
AccB1I GGYRCC 1 cut(s) 443
AciI CCGC 1 cut(s) 295
AclWI GGATC 2 cut(s) 93, 773
AcsI RAATTY 1 cut(s) 77
AcuI CTGAAG 1 cut(s) 566
AdeI CACNNNGTG 1 cut(s) 1066
AfaI GTAC 1 cut(s) 445
AflIII ACRYGT 2 cut(s) 44, 1035
AgsI TTSAA 6 cut(s) 272, 349, 680, 988, 1044, 1081
AjnI CCWGG 3 cut(s) 152, 212, 447
AjuI GAANNNNNNNTTGG 2 cut(s) 401, 433
AluBI AGCT 3 cut(s) 245, 724, 839
AluI AGCT 3 cut(s) 245, 724, 839
Alw26I GTCTC 2 cut(s) 99, 195
AlwI GGATC 2 cut(s) 93, 773
Ama87I CYCGRG 1 cut(s) 489
AoxI GGCC 1 cut(s) 283
ApeKI GCWGC 3 cut(s) 230, 716, 980
ApoI RAATTY 1 cut(s) 77
Asp718I GGTACC 1 cut(s) 443
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 2 cut(s) 620, 1099
AsuHPI GGTGA 4 cut(s) 202, 310, 463, 854
AvaI CYCGRG 1 cut(s) 489
AvaII GGWCC 2 cut(s) 620, 1099
BaeI ACNNNNGTAYC 2 cut(s) 435, 468
BanI GGYRCC 1 cut(s) 443
BanII GRGCYC 1 cut(s) 254
BbsI GAAGAC 1 cut(s) 560
BbvI GCAGC 3 cut(s) 242, 728, 967
BccI CCATC 2 cut(s) 183, 497
BciT130I CCWGG 3 cut(s) 154, 214, 449
BcoDI GTCTC 2 cut(s) 99, 195
BfaI CTAG 4 cut(s) 74, 206, 227, 1103
BisI GCNGC 4 cut(s) 231, 296, 717, 981
BlsI GCNGC 4 cut(s) 232, 297, 718, 982
Bme1390I CCNGG 3 cut(s) 154, 214, 449
Bme18I GGWCC 2 cut(s) 620, 1099
BmeT110I CYCGRG 1 cut(s) 489
BmgT120I GGNCC 2 cut(s) 620, 1099
BmiI GGNNCC 1 cut(s) 445
BmrFI CCNGG 3 cut(s) 154, 214, 449
BmrI ACTGGG 1 cut(s) 859
BmsI GCATC 2 cut(s) 498, 745
BmuI ACTGGG 1 cut(s) 859
BpiI GAAGAC 1 cut(s) 560
BsaI GGTCTC 1 cut(s) 195
BsaJI CCNNGG 2 cut(s) 152, 447
Bse1I ACTGG 2 cut(s) 321, 854
BseBI CCWGG 3 cut(s) 154, 214, 449
BseDI CCNNGG 2 cut(s) 152, 447
BseGI GGATG 5 cut(s) 97, 433, 513, 526, 754
BseMII CTCAG 1 cut(s) 484
BseNI ACTGG 2 cut(s) 321, 854
BseXI GCAGC 3 cut(s) 242, 728, 967
BseYI CCCAGC 2 cut(s) 245, 724
BshFI GGCC 1 cut(s) 285
BshNI GGYRCC 1 cut(s) 443
BsiHKCI CYCGRG 1 cut(s) 489
BslFI GGGAC 1 cut(s) 291
BsmAI GTCTC 2 cut(s) 99, 195
BsmFI GGGAC 1 cut(s) 291
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 1 cut(s) 285
Bso31I GGTCTC 1 cut(s) 195
BsoBI CYCGRG 1 cut(s) 489
Bsp1286I GDGCHC 1 cut(s) 254
Bsp143I GATC 3 cut(s) 85, 117, 778
BspACI CCGC 1 cut(s) 295
BspANI GGCC 1 cut(s) 285
BspCNI CTCAG 1 cut(s) 483
BspHI TCATGA 1 cut(s) 571
BspLI GGNNCC 1 cut(s) 445
BspPI GGATC 2 cut(s) 93, 773
BspT107I GGYRCC 1 cut(s) 443
BspTNI GGTCTC 1 cut(s) 195
BsrI ACTGG 2 cut(s) 321, 854
BssECI CCNNGG 2 cut(s) 152, 447
BssMI GATC 3 cut(s) 85, 117, 778
Bst2UI CCWGG 3 cut(s) 154, 214, 449
Bst4CI ACNGT 2 cut(s) 112, 905
Bst6I CTCTTC 2 cut(s) 469, 594
BstAPI GCANNNNNTGC 1 cut(s) 236
BstC8I GCNNGC 4 cut(s) 35, 172, 243, 1051
BstDEI CTNAG 3 cut(s) 470, 650, 825
BstF5I GGATG 5 cut(s) 97, 433, 513, 526, 754
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 3 cut(s) 88, 120, 781
BstMAI GTCTC 2 cut(s) 99, 195
BstMBI GATC 3 cut(s) 85, 117, 778
BstMWI GCNNNNNNNGC 4 cut(s) 227, 236, 367, 716
BstNI CCWGG 3 cut(s) 154, 214, 449
BstNSI RCATGY 2 cut(s) 48, 1039
BstSCI CCNGG 3 cut(s) 152, 212, 447
BstV1I GCAGC 3 cut(s) 242, 728, 967
BstV2I GAAGAC 1 cut(s) 560
BsuRI GGCC 1 cut(s) 285
BtsCI GGATG 5 cut(s) 97, 433, 513, 526, 754
BtsIMutI CAGTG 1 cut(s) 910
Cac8I GCNNGC 4 cut(s) 35, 172, 243, 1051
CciI TCATGA 1 cut(s) 571
CfoI GCGC 1 cut(s) 241
Cfr13I GGNCC 2 cut(s) 620, 1099
Csp6I GTAC 1 cut(s) 444
CviAII CATG 9 cut(s) 45, 572, 629, 694, 974, 1036, 1087, 1110, 1128
CviQI GTAC 1 cut(s) 444
DdeI CTNAG 3 cut(s) 470, 650, 825
DpnI GATC 3 cut(s) 87, 119, 780
DpnII GATC 3 cut(s) 85, 117, 778
DraIII CACNNNGTG 1 cut(s) 1066
Eam1104I CTCTTC 2 cut(s) 469, 594
EarI CTCTTC 2 cut(s) 469, 594
Eco24I GRGCYC 1 cut(s) 254
Eco31I GGTCTC 1 cut(s) 195
Eco32I GATATC 1 cut(s) 1125
Eco47I GGWCC 2 cut(s) 620, 1099
Eco57I CTGAAG 1 cut(s) 566
Eco88I CYCGRG 1 cut(s) 489
EcoO109I RGGNCCY 1 cut(s) 620
EcoRII CCWGG 3 cut(s) 152, 212, 447
EcoRV GATATC 1 cut(s) 1125
EcoT38I GRGCYC 1 cut(s) 254
FaeI CATG 9 cut(s) 48, 575, 632, 697, 977, 1039, 1090, 1113, 1131
FalI AAGNNNNNCTT 4 cut(s) 264, 296, 567, 599
FaqI GGGAC 1 cut(s) 291
FatI CATG 9 cut(s) 44, 571, 628, 693, 973, 1035, 1086, 1109, 1127
FauNDI CATATG 3 cut(s) 166, 553, 712
Fnu4HI GCNGC 4 cut(s) 231, 296, 717, 981
FokI GGATG 5 cut(s) 84, 440, 520, 533, 761
FriOI GRGCYC 1 cut(s) 254
Fsp4HI GCNGC 4 cut(s) 231, 296, 717, 981
FspBI CTAG 4 cut(s) 74, 206, 227, 1103
FspI TGCGCA 1 cut(s) 240
GlaI GCGC 1 cut(s) 240
GluI GCNGC 4 cut(s) 231, 296, 717, 981
GsaI CCCAGC 2 cut(s) 249, 728
HaeIII GGCC 1 cut(s) 285
HhaI GCGC 1 cut(s) 241
Hin1II CATG 9 cut(s) 48, 575, 632, 697, 977, 1039, 1090, 1113, 1131
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HinfI GANTC 5 cut(s) 148, 305, 658, 970, 1001
HphI GGTGA 4 cut(s) 202, 310, 463, 854
Hpy166II GTNNAC 4 cut(s) 318, 467, 1060, 1099
Hpy188I TCNGA 6 cut(s) 129, 385, 473, 796, 836, 994
Hpy188III TCNNGA 5 cut(s) 194, 272, 302, 572, 623
Hpy8I GTNNAC 4 cut(s) 318, 467, 1060, 1099
HpyAV CCTTC 3 cut(s) 541, 674, 691
HpyCH4III ACNGT 2 cut(s) 112, 905
HpyCH4V TGCA 3 cut(s) 170, 716, 857
HpyF10VI GCNNNNNNNGC 4 cut(s) 227, 236, 367, 716
HpyF3I CTNAG 3 cut(s) 470, 650, 825
Hsp92II CATG 9 cut(s) 48, 575, 632, 697, 977, 1039, 1090, 1113, 1131
HspAI GCGC 1 cut(s) 239
KpnI GGTACC 1 cut(s) 447
Kzo9I GATC 3 cut(s) 85, 117, 778
Lsp1109I GCAGC 3 cut(s) 242, 728, 967
LweI GCATC 2 cut(s) 498, 745
MaeI CTAG 4 cut(s) 74, 206, 227, 1103
MaeIII GTNAC 2 cut(s) 208, 907
MalI GATC 3 cut(s) 87, 119, 780
MboI GATC 3 cut(s) 85, 117, 778
MboII GAAGA 5 cut(s) 127, 486, 560, 581, 587
MhlI GDGCHC 1 cut(s) 254
MluCI AATT 4 cut(s) 77, 411, 790, 949
MlyI GAGTC 1 cut(s) 314
MmeI TCCRAC 3 cut(s) 399, 819, 874
MnlI CCTC 7 cut(s) 268, 379, 478, 681, 694, 949, 1066
MseI TTAA 2 cut(s) 480, 737
MslI CAYNNNNRTG 2 cut(s) 609, 633
MspA1I CMGCKG 1 cut(s) 295
MspR9I CCNGG 3 cut(s) 154, 214, 449
Mva1269I GAATGC 1 cut(s) 223
MvaI CCWGG 3 cut(s) 154, 214, 449
MwoI GCNNNNNNNGC 4 cut(s) 227, 236, 367, 716
NdeI CATATG 3 cut(s) 166, 553, 712
NdeII GATC 3 cut(s) 85, 117, 778
NlaIII CATG 9 cut(s) 48, 575, 632, 697, 977, 1039, 1090, 1113, 1131
NlaIV GGNNCC 1 cut(s) 445
NmuCI GTSAC 2 cut(s) 208, 907
NsbI TGCGCA 1 cut(s) 240
NspI RCATGY 2 cut(s) 48, 1039
PagI TCATGA 1 cut(s) 571
PciI ACATGT 2 cut(s) 44, 1035
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 4 cut(s) 148, 658, 970, 1001
PflFI GACNNNGTC 1 cut(s) 206
PkrI GCNGC 4 cut(s) 232, 297, 718, 982
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
PpuMI RGGWCCY 1 cut(s) 620
PscI ACATGT 2 cut(s) 44, 1035
Psp5II RGGWCCY 1 cut(s) 620
Psp6I CCWGG 3 cut(s) 152, 212, 447
PspFI CCCAGC 2 cut(s) 245, 724
PspGI CCWGG 3 cut(s) 152, 212, 447
PspN4I GGNNCC 1 cut(s) 445
PspPI GGNCC 2 cut(s) 620, 1099
PspPPI RGGWCCY 1 cut(s) 620
PsyI GACNNNGTC 1 cut(s) 206
RsaI GTAC 1 cut(s) 445
RsaNI GTAC 1 cut(s) 444
RseI CAYNNNNRTG 2 cut(s) 609, 633
SaqAI TTAA 2 cut(s) 480, 737
SatI GCNGC 4 cut(s) 231, 296, 717, 981
Sau3AI GATC 3 cut(s) 85, 117, 778
Sau96I GGNCC 2 cut(s) 620, 1099
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 3 cut(s) 154, 214, 449
SduI GDGCHC 1 cut(s) 254
SfaNI GCATC 2 cut(s) 498, 745
SinI GGWCC 2 cut(s) 620, 1099
SmiMI CAYNNNNRTG 2 cut(s) 609, 633
Sse9I AATT 4 cut(s) 77, 411, 790, 949
SsiI CCGC 1 cut(s) 295
SspMI CTAG 4 cut(s) 74, 206, 227, 1103
StyD4I CCNGG 3 cut(s) 152, 212, 447
TaaI ACNGT 2 cut(s) 112, 905
TaqI TCGA 6 cut(s) 134, 183, 513, 706, 887, 1118
TaqII GACCGA 1 cut(s) 213
TasI AATT 4 cut(s) 77, 411, 790, 949
TauI GCSGC 1 cut(s) 298
TfiI GAWTC 4 cut(s) 148, 658, 970, 1001
Tru1I TTAA 2 cut(s) 480, 737
Tru9I TTAA 2 cut(s) 480, 737
TscAI CASTG 1 cut(s) 910
TseFI GTSAC 2 cut(s) 208, 907
TseI GCWGC 3 cut(s) 230, 716, 980
Tsp45I GTSAC 2 cut(s) 208, 907
TspDTI ATGAA 7 cut(s) 560, 588, 593, 710, 962, 1098, 1103
TspGWI ACGGA 1 cut(s) 331
TspRI CASTG 1 cut(s) 910
Tth111I GACNNNGTC 1 cut(s) 206
VpaK11BI GGWCC 2 cut(s) 620, 1099
XapI RAATTY 1 cut(s) 77
XceI RCATGY 2 cut(s) 48, 1039
XspI CTAG 4 cut(s) 74, 206, 227, 1103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.