Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0007813

Physical Location & Seq

Genomic Coordinates Forward (+)

3489838 .. 3493463

Gene Structure 3626 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1046200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3246 bp

ATGCGATTGCGCCACCACTTCCGCCCCAAAGCCACTTCCCTCCTCACCAATTCTCCACACCCACAATCTCTTCTCTTACTCTCCTCTGCCCTCTCTCACTCTGCCCGCATATCCCCATCTTCTGCTTCCTCCTCCTCTCAGTGGTTCTCCATCCTCCGCGCCGCCGTCGCCGCCGCAGACTTGCAGCTCGGAAAGCGTGTGCACGCGCTGATCGTAACCTCCGGCGATGGCCCGGATCAGTTTTTGACCAACAACCTCATCGCCATGTATTCCAAATGCGGATCGCTTTTATCCGCACGCCGCCTGTTTGATAAAATGCCCGGCCGAGACCTTGTCACATGGAACTCCATTCTAGCGGCCTATGCGCATGCTGCGGGCTCTGATGTTGAGAATGTTCAAGAGGGTCTTAGCCTTTTCCGGCGTCTTCGTGAGTCGGTTGTTTTTACCAGTCGGCTCACTTTGGCGCCGGTTTTGAAAATGTGTTTGATATCAGGGCACCTATGGGTTTCCGAGGCGGTTCATGGGTATGCTGTTAAGATTGGATTGGAGTGGAATGAGCTTGTTTCTGGTGCTCTTGTGAATATATATTCTAAATTCGGACGAATTAAGGCCGCTCGTGTGTTGTTTGATGGGATGATGGAAAGGGATGTTGTGTTGTGGAATACAATGCTCAAGGCATATGTGGAAACGGGTCTTGAGGAAGAAGGACTTTCTTTCCTCTCAGCGTTTCATCGGAGTGGATTGCATCCCGATGATGTAAGTGTGCGTTCTGTTCTCAGTTGGATTGACAAAGTTGATTCTTATGAATGCAAGAGGCACATGGAGCAGGTTCAAGCATACGCGACAAAATTGTTTCTGTATGATACAAAGTCGGAGTGTTCGGACATATATTCTTGGAACAAGACGTTGTCCGAGTATGTTAAAGCTGGTGAAAATTGGGCTGCTATAGACTGCTTTAGAAACATTGTACGATCAAAAGTAGAGTTTGACACGGTGACATTAGTTGTTATTCTGTCTACGGTTGCCGGTGTAAATGATTTGGAGTTGGGGAAACAGATTCATGGTCTTGCTTTGAAATCACGTTTTGATTCTGTTGTTTCTGTTGCAAATAGCCTCATCAACATGTATTCAAGGGCTCGTTCTGCTTATTCTTCAAGAAAAGTGTTCAATCGCATGAAAGAAGTGGACTTAATTTCGTTGAACTCAATGATATCATGTTGTGCGCAAAGTGGTTTAGGAGAGGAAGCCGTAAACTTATTCATAGGCTTATTACATAATGGTTTGAGACCGGATCAATTTACTATCGCAAGTATTCTAAGGGCTTGCTCCTCCCTTGAAGAAGGGTTGTCAGCCAGCAAACAGATTCATGTTCATGCTATAAAATCCGGTATTGTTGCTGACAGTTTTGTTTCGACAGCTCTTATTGATGTTTATTCTAGAAGTGGAAACATGGAGGACGCAGAGGTCATTCTTGGAAATGAACTTGAATTCAATCTGGCATCTTGGAATGCAATGATGTTCGGATACATAATGTGTAATGACAGTCACAAGGCATTGGAACTTATGAGGATAATGCACGAAGGTGGACACAGCACAGATGCGATATCTTTAACAACTGCGGCTAAGGCTGCTAGTAGCCTGGTAGCTTTGGGACCAGGACCAGGCAAGCAAATTCATGCTCATGCCATAAAAACAGGTTTTGTTTCGGATTTATGTGTTAACAGTGGAATTCTGGAGATGTATATCAAATGTGGTGACATGGGAAGTGCACACACAGTGTTCAACGACATACCTGCACCCGATGGTGTTGCATGGACAACTATGATCTCAGGATGTGTAGAAAATGGAGATGAAGGGCGCTCTCTTTCTATATACCATCGGATGAGGCAGTCAGGAGTCGATCCCGATGAATATACCTTAGCCACCCTTGTCAAAGCCAGCTCTTGTCTGACAGCATTAGCACCAGGGAAACAGATACACGCTGATGTGATAAAGTTGGATTTTTCCTCAGACACTTTTGTCGCAACATCACTTGTTGACATGTATGCCAAGTGCGGCAACATAGAAGATGCTTATCATTTATTCAGGAAAATGGATGTTAGGAATGTCGCCCTGTGGAATGCCATGTTGGTCGGTTTAGCTCAGCACGGAAACGCTAAAGAAGCACTAAGCCTTTTCAGAGTCATGAAAACGAAGAACATCGAGCCTGATAGAGTTACTTTCATTGGAGTCCTTTCCGCTTGCAGCCATTCTGGTTTAGTATCCGAAGCATTTGAGTATTTTTCTAAAATGCAGAAAGATTACGGCGTCGAACCTGAGATGGAGCACTACTTTTGCCTAGTTGATGCCCTTGGCCGCGCAGGTCTAGTCCAAGAGGCAGAAAAACTGATAGTATCAATGCCCTTTGAAGCTTCTGCTTCAATCTCCTGGCTGTGGAGCCATCTTACTCGTCTGCTTACGTGCTTTTATCCAACATCTACGCAGCTGCAGCGTTCTCTGTACTACCACAGTCAGAAGCTAGCAATAGCTTATGGACTCATAAGCACTCCTCCGTCCGCTGCCATTTGGGTGATAAAAAACCTGAGAGTTTGTGAAGATTGCCATAATGCAGTCAAATACATATCGAAAGTTTATCAGAGAGAGATTGTTTCATGGGGGTTCTTTCAGCGCAGCTGCCTGCTAACCGACCCAGATTTTTTGAACAGATGGATTTCGTGGCGAATCACTTTTGGGGATGTTGTGTTATGGAATACAATGGTCAAGGCATATGTGGAAACGGGTCTTGAGGAAGGACTTTATTTCTTCTCTGCATTTCATTGGAGTGGATTGCGCCTTGATGATGTTAATGCAAGAGGCATATGGAGCAGGTTCAAGCATACGCGAAGAAATTGTTTCTGTATGATACAAAGTAGGAGTGTTTGGACATATATTCTTGGAACAAGACATTGTCTGAGTATGTTAAAGCTGGTGAAAATTGGGCTGCGGACTGCTGTAGTGTATTCAAACGCTCGTTCTGCTTATTCATCGAGAAAAGTGTTCAATCGTGTGAAAGAAGTGGACTTAATTTCGGCGAACTCAATGATATCATGTTGTGCGCAAAGTGGTTTAGGAAGGAAGCGGGCTTGCTCCTCGCTTGAAGAAGGGCTGTCAGCCAGCAAACAGATTCATGTTCATGATATAAAATCCGATATTGTTGCTGACAGTGTTGTTTCGACGGCTCTTATTGATGTTTACTCTAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

1082

Amino Acids

119.88

Weight (kDa)

8.24

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	396 - 443	1e-05	PPR repeat family
PPR_2	PF13041	600 - 646	7.5e-08	PPR repeat family
PPR_2	PF13041	702 - 749	2.4e-10	PPR repeat family
DYW_deaminase	PF14432	831 - 883	3.4e-18	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33170
fragaria_vesca	FvH4_2g30790
malus_domestica	MD08G1046200.v1.1 MD15G1047600.v1.1
prunus_persica	Prupe.1G402000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0312061 RchiOBHm_Chr6g0312101 RchiOBHm_Chr7g0217531
rosa_laevigata	RLG00000010354 RLG00000010356
rosa_multiflora	Rmu_sc0001501.1_g000037
rosa_roxburghii	Rroxscaffold_7G00157070 Rroxscaffold_7G00157080
rosa_rugosa	Rorug06G0392600
rosa_samantha	Rh6AG509100 Rh6AG509400 Rh6BG520400 Rh6BG520500 Rh6CG526300 Rh6CG526400 Rh6DG511800 Rh6DG511900
rosa_wichuraiana	Rw6G044330 Rw6G044340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1463, 2018
Acc16I	TGCGCA	3 cut(s)	366, 1224, 3096
Acc36I	ACCTGC	4 cut(s)	817, 1801, 2351, 2856
AccB1I	GGYRCC	2 cut(s)	463, 495
AccBSI	CCGCTC	1 cut(s)	614
AccI	GTMKAC	1 cut(s)	1016
AccII	CGCG	5 cut(s)	159, 206, 842, 2358, 2881
AclWI	GGATC	4 cut(s)	243, 289, 1299, 1895
AcoI	YGGCCR	2 cut(s)	322, 2353
AcsI	RAATTY	4 cut(s)	593, 1487, 1671, 1728
AcyI	GRCGYC	3 cut(s)	421, 464, 2307
AdeI	CACNNNGTG	1 cut(s)	1777
AfaI	GTAC	2 cut(s)	969, 2501
AfiI	CCNNNNNNNGG	3 cut(s)	141, 1661, 2433
AflIII	ACRYGT	2 cut(s)	1122, 2040
AjnI	CCWGG	5 cut(s)	1638, 1654, 1660, 1963, 2426
AjuI	GAANNNNNNNTTGG	2 cut(s)	2111, 2143
AleI	CACNNNNGTG	1 cut(s)	1581
Alw21I	GWGCWC	4 cut(s)	204, 574, 1771, 2328
Alw26I	GTCTC	2 cut(s)	321, 1279
Alw44I	GTGCAC	2 cut(s)	200, 1767
AlwI	GGATC	4 cut(s)	243, 289, 1299, 1895
AoxI	GGCC	5 cut(s)	229, 322, 357, 609, 2353
ApaLI	GTGCAC	2 cut(s)	200, 1767
ApoI	RAATTY	4 cut(s)	593, 1487, 1671, 1728
AspS9I	GGNCC	3 cut(s)	230, 1652, 1658
AsuC2I	CCSGG	2 cut(s)	233, 321
AsuHPI	GGTGA	6 cut(s)	37, 941, 1006, 1766, 2581, 2980
AsuNHI	GCTAGC	1 cut(s)	2518
AvaII	GGWCC	2 cut(s)	1652, 1658
BaeGI	GKGCMC	3 cut(s)	204, 498, 1771
BanI	GGYRCC	2 cut(s)	463, 495
BanII	GRGCYC	2 cut(s)	380, 1138
BauI	CACGAG	1 cut(s)	615
BbsI	GAAGAC	1 cut(s)	416
Bbv12I	GWGCWC	4 cut(s)	204, 574, 1771, 2328
BceAI	ACGGC	4 cut(s)	149, 1232, 2320, 3231
BcgI	CGANNNNNNTGC	6 cut(s)	1775, 1790, 1809, 1824, 3176, 3210
BciT130I	CCWGG	5 cut(s)	1640, 1656, 1662, 1965, 2428
BciVI	GTATCC	2 cut(s)	1517, 2272
BcnI	CCSGG	2 cut(s)	233, 321
BcoDI	GTCTC	2 cut(s)	321, 1279
BfaI	CTAG	7 cut(s)	353, 1437, 1632, 2339, 2366, 2519, 3237
BfmI	CTRYAG	3 cut(s)	945, 2486, 2991
BfoI	RGCGCY	2 cut(s)	467, 1861
BfuAI	ACCTGC	4 cut(s)	817, 1801, 2351, 2856
BfuI	GTATCC	2 cut(s)	1517, 2272
BlpI	GCTNAGC	1 cut(s)	2142
Bme1390I	CCNGG	7 cut(s)	233, 321, 1640, 1656, 1662, 1965, 2428
Bme18I	GGWCC	2 cut(s)	1652, 1658
BmgT120I	GGNCC	3 cut(s)	230, 1652, 1658
BmiI	GGNNCC	4 cut(s)	465, 497, 1653, 2438
BmrFI	CCNGG	7 cut(s)	233, 321, 1640, 1656, 1662, 1965, 2428
BmsI	GCATC	5 cut(s)	754, 1508, 1588, 2059, 2335
BmtI	GCTAGC	1 cut(s)	2522
BpiI	GAAGAC	1 cut(s)	416
BpmI	CTGGAG	1 cut(s)	1754
Bpu10I	CCTNAGC	2 cut(s)	1623, 1918
Bpu1102I	GCTNAGC	1 cut(s)	2142
BpuEI	CTTGAG	3 cut(s)	656, 716, 2804
BpuMI	CCSGG	2 cut(s)	233, 321
BsaAI	YACGTR	1 cut(s)	2460
BsaBI	GATNNNNATC	2 cut(s)	1742, 2073
BsaHI	GRCGYC	3 cut(s)	421, 464, 2307
BsaI	GGTCTC	2 cut(s)	321, 1279
BsaJI	CCNNGG	3 cut(s)	510, 1964, 2350
BsaWI	WCCGGW	2 cut(s)	1288, 1385
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	3 cut(s)	141, 1661, 2433
Bse118I	RCCGGY	2 cut(s)	466, 1025
Bse1I	ACTGG	1 cut(s)	447
Bse3DI	GCAATG	1 cut(s)	1518
Bse8I	GATNNNNATC	2 cut(s)	1742, 2073
BseBI	CCWGG	5 cut(s)	1640, 1656, 1662, 1965, 2428
BseDI	CCNNGG	3 cut(s)	510, 1964, 2350
BseGI	GGATG	8 cut(s)	150, 639, 652, 745, 1838, 1887, 2101, 2740
BseJI	GATNNNNATC	2 cut(s)	1742, 2073
BseLI	CCNNNNNNNGG	3 cut(s)	141, 1661, 2433
BseMI	GCAATG	1 cut(s)	1518
BseMII	CTCAG	9 cut(s)	152, 735, 790, 1842, 2022, 2156, 2307, 2573, 2942
BseNI	ACTGG	1 cut(s)	447
BseRI	GAGGAG	7 cut(s)	32, 73, 121, 124, 1318, 2538, 3118
BseSI	GKGCMC	3 cut(s)	204, 498, 1771
BseX3I	CGGCCG	1 cut(s)	322
BsgI	GTGCAG	1 cut(s)	1779
Bsh1236I	CGCG	5 cut(s)	159, 206, 842, 2358, 2881
Bsh1285I	CGRYCG	1 cut(s)	325
BshFI	GGCC	5 cut(s)	231, 324, 359, 611, 2355
BshNI	GGYRCC	2 cut(s)	463, 495
BsiEI	CGRYCG	1 cut(s)	325
BsiHKAI	GWGCWC	4 cut(s)	204, 574, 1771, 2328
BsiSI	CCGG	8 cut(s)	222, 233, 321, 418, 467, 1026, 1289, 1386
BslFI	GGGAC	1 cut(s)	1665
BslI	CCNNNNNNNGG	3 cut(s)	141, 1661, 2433
BsmAI	GTCTC	2 cut(s)	321, 1279
BsmFI	GGGAC	1 cut(s)	1665
BsmI	GAATGC	3 cut(s)	812, 1513, 2125
BsnI	GGCC	5 cut(s)	231, 324, 359, 611, 2355
Bso31I	GGTCTC	2 cut(s)	321, 1279
Bsp1286I	GDGCHC	7 cut(s)	204, 380, 498, 574, 1138, 1771, 2328
Bsp143I	GATC	7 cut(s)	210, 235, 281, 971, 1291, 1824, 1900
Bsp1720I	GCTNAGC	1 cut(s)	2142
BspANI	GGCC	5 cut(s)	231, 324, 359, 611, 2355
BspCNI	CTCAG	9 cut(s)	151, 734, 789, 1841, 2021, 2155, 2308, 2574, 2943
BspFNI	CGCG	5 cut(s)	159, 206, 842, 2358, 2881
BspHI	TCATGA	2 cut(s)	2184, 3172
BspLI	GGNNCC	4 cut(s)	465, 497, 1653, 2438
BspMAI	CTGCAG	1 cut(s)	2490
BspMI	ACCTGC	4 cut(s)	817, 1801, 2351, 2856
BspOI	GCTAGC	1 cut(s)	2522
BspPI	GGATC	4 cut(s)	243, 289, 1299, 1895
BspT107I	GGYRCC	2 cut(s)	463, 495
BspTNI	GGTCTC	2 cut(s)	321, 1279
BsrBI	CCGCTC	1 cut(s)	614
BsrDI	GCAATG	1 cut(s)	1518
BsrFI	RCCGGY	2 cut(s)	466, 1025
BsrI	ACTGG	1 cut(s)	447
BssAI	RCCGGY	2 cut(s)	466, 1025
BssECI	CCNNGG	3 cut(s)	510, 1964, 2350
BssMI	GATC	7 cut(s)	210, 235, 281, 971, 1291, 1824, 1900
BssNI	GRCGYC	3 cut(s)	421, 464, 2307
BssSI	CACGAG	1 cut(s)	615
BssT1I	CCWWGG	1 cut(s)	2350
Bst2BI	CACGAG	1 cut(s)	615
Bst2UI	CCWGG	5 cut(s)	1640, 1656, 1662, 1965, 2428
Bst4CI	ACNGT	8 cut(s)	994, 1021, 1403, 1544, 1724, 1777, 2510, 3203
Bst6I	CTCTTC	1 cut(s)	75
BstACI	GRCGYC	3 cut(s)	421, 464, 2307
BstBAI	YACGTR	1 cut(s)	2460
BstF5I	GGATG	8 cut(s)	150, 639, 652, 745, 1838, 1887, 2101, 2740
BstFNI	CGCG	5 cut(s)	159, 206, 842, 2358, 2881
BstH2I	RGCGCY	2 cut(s)	467, 1861
BstKTI	GATC	7 cut(s)	213, 238, 284, 974, 1294, 1827, 1903
BstMAI	GTCTC	2 cut(s)	321, 1279
BstMBI	GATC	7 cut(s)	210, 235, 281, 971, 1291, 1824, 1900
BstMCI	CGRYCG	1 cut(s)	325
BstNI	CCWGG	5 cut(s)	1640, 1656, 1662, 1965, 2428
BstNSI	RCATGY	3 cut(s)	371, 1126, 2044
BstSCI	CCNGG	7 cut(s)	231, 319, 1638, 1654, 1660, 1963, 2426
BstSFI	CTRYAG	3 cut(s)	945, 2486, 2991
BstSLI	GKGCMC	3 cut(s)	204, 498, 1771
BstUI	CGCG	5 cut(s)	159, 206, 842, 2358, 2881
BstV2I	GAAGAC	1 cut(s)	416
BstZI	CGGCCG	1 cut(s)	322
BsuI	GTATCC	2 cut(s)	1517, 2272
BsuRI	GGCC	5 cut(s)	231, 324, 359, 611, 2355
BtgZI	GCGATG	2 cut(s)	240, 244
BtsCI	GGATG	8 cut(s)	150, 639, 652, 745, 1838, 1887, 2101, 2740
BtsIMutI	CAGTG	4 cut(s)	146, 1729, 1782, 3208
BveI	ACCTGC	4 cut(s)	817, 1801, 2351, 2856
CciI	TCATGA	2 cut(s)	2184, 3172
Cfr10I	RCCGGY	2 cut(s)	466, 1025
Cfr13I	GGNCC	3 cut(s)	230, 1652, 1658
CseI	GACGC	3 cut(s)	410, 1466, 2296
Csp6I	GTAC	2 cut(s)	968, 2500
CviQI	GTAC	2 cut(s)	968, 2500
DinI	GGCGCC	1 cut(s)	465
DpnI	GATC	7 cut(s)	212, 237, 283, 973, 1293, 1826, 1902
DpnII	GATC	7 cut(s)	210, 235, 281, 971, 1291, 1824, 1900
DraIII	CACNNNGTG	1 cut(s)	1777
DrdI	GACNNNNNNGTC	2 cut(s)	1463, 2018
DseDI	GACNNNNNNGTC	2 cut(s)	1463, 2018
EaeI	YGGCCR	2 cut(s)	322, 2353
EagI	CGGCCG	1 cut(s)	322
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
EciI	GGCGGA	1 cut(s)	11
EclXI	CGGCCG	1 cut(s)	322
Eco130I	CCWWGG	1 cut(s)	2350
Eco24I	GRGCYC	2 cut(s)	380, 1138
Eco31I	GGTCTC	2 cut(s)	321, 1279
Eco32I	GATATC	4 cut(s)	489, 1212, 1605, 3084
Eco47I	GGWCC	2 cut(s)	1652, 1658
Eco52I	CGGCCG	1 cut(s)	322
EcoRI	GAATTC	2 cut(s)	1487, 1728
EcoRII	CCWGG	5 cut(s)	1638, 1654, 1660, 1963, 2426
EcoRV	GATATC	4 cut(s)	489, 1212, 1605, 3084
EcoT14I	CCWWGG	1 cut(s)	2350
EcoT38I	GRGCYC	2 cut(s)	380, 1138
EgeI	GGCGCC	1 cut(s)	465
EheI	GGCGCC	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	2350
FalI	AAGNNNNNCTT	4 cut(s)	390, 422, 693, 725
FaqI	GGGAC	1 cut(s)	1665
FauI	CCCGC	3 cut(s)	113, 367, 3111
FauNDI	CATATG	3 cut(s)	679, 2767, 2858
FblI	GTMKAC	1 cut(s)	1016
FokI	GGATG	8 cut(s)	137, 646, 659, 732, 1845, 1894, 2108, 2747
FriOI	GRGCYC	2 cut(s)	380, 1138
FspAI	RTGCGCAY	1 cut(s)	366
FspBI	CTAG	7 cut(s)	353, 1437, 1632, 2339, 2366, 2519, 3237
FspI	TGCGCA	3 cut(s)	366, 1224, 3096
GsuI	CTGGAG	1 cut(s)	1754
HaeII	RGCGCY	2 cut(s)	467, 1861
HaeIII	GGCC	5 cut(s)	231, 324, 359, 611, 2355
HapII	CCGG	8 cut(s)	222, 233, 321, 418, 467, 1026, 1289, 1386
HgaI	GACGC	3 cut(s)	410, 1466, 2296
Hin1I	GRCGYC	3 cut(s)	421, 464, 2307
HincII	GTYRAC	2 cut(s)	1720, 2038
HindII	GTYRAC	2 cut(s)	1720, 2038
HindIII	AAGCTT	1 cut(s)	2409
HpaI	GTTAAC	1 cut(s)	1720
HpaII	CCGG	8 cut(s)	222, 233, 321, 418, 467, 1026, 1289, 1386
HphI	GGTGA	6 cut(s)	37, 941, 1006, 1766, 2581, 2980
Hpy99I	CGWCG	3 cut(s)	170, 2312, 3217
HpyAV	CCTTC	7 cut(s)	698, 1334, 1574, 1847, 2783, 3105, 3134
HpyCH4III	ACNGT	8 cut(s)	994, 1021, 1403, 1544, 1724, 1777, 2510, 3203
HpyCH4IV	ACGT	3 cut(s)	905, 1081, 2459
HpySE526I	ACGT	3 cut(s)	905, 1081, 2459
Hsp92I	GRCGYC	3 cut(s)	421, 464, 2307
KasI	GGCGCC	1 cut(s)	463
KspAI	GTTAAC	1 cut(s)	1720
Kzo9I	GATC	7 cut(s)	210, 235, 281, 971, 1291, 1824, 1900
LmnI	GCTCC	6 cut(s)	823, 1331, 2323, 2436, 2862, 3131
LweI	GCATC	5 cut(s)	754, 1508, 1588, 2059, 2335
MaeI	CTAG	7 cut(s)	353, 1437, 1632, 2339, 2366, 2519, 3237
MaeII	ACGT	3 cut(s)	905, 1081, 2459
MaeIII	GTNAC	6 cut(s)	214, 334, 994, 1544, 1754, 2215
MalI	GATC	7 cut(s)	212, 237, 283, 973, 1293, 1826, 1902
MbiI	CCGCTC	1 cut(s)	614
MboI	GATC	7 cut(s)	210, 235, 281, 971, 1291, 1824, 1900
MhlI	GDGCHC	7 cut(s)	204, 380, 498, 574, 1138, 1771, 2328
Mly113I	GGCGCC	1 cut(s)	464
MlyI	GAGTC	5 cut(s)	440, 1905, 2190, 2238, 2529
MmeI	TCCRAC	4 cut(s)	761, 852, 1977, 2495
MseI	TTAA	9 cut(s)	534, 606, 921, 1190, 1610, 1719, 2844, 2960, 3062
MspA1I	CMGCKG	3 cut(s)	2485, 2558, 2673
MspI	CCGG	8 cut(s)	222, 233, 321, 418, 467, 1026, 1289, 1386
MspR9I	CCNGG	7 cut(s)	233, 321, 1640, 1656, 1662, 1965, 2428
Mva1269I	GAATGC	3 cut(s)	812, 1513, 2125
MvaI	CCWGG	5 cut(s)	1640, 1656, 1662, 1965, 2428
MvnI	CGCG	5 cut(s)	159, 206, 842, 2358, 2881
NarI	GGCGCC	1 cut(s)	464
NciI	CCSGG	2 cut(s)	233, 321
NdeI	CATATG	3 cut(s)	679, 2767, 2858
NdeII	GATC	7 cut(s)	210, 235, 281, 971, 1291, 1824, 1900
NheI	GCTAGC	1 cut(s)	2518
NlaIV	GGNNCC	4 cut(s)	465, 497, 1653, 2438
NmeAIII	GCCGAG	1 cut(s)	350
NmuCI	GTSAC	4 cut(s)	334, 994, 1544, 1754
NsbI	TGCGCA	3 cut(s)	366, 1224, 3096
NspI	RCATGY	3 cut(s)	371, 1126, 2044
OliI	CACNNNNGTG	1 cut(s)	1581
PaeI	GCATGC	1 cut(s)	371
PagI	TCATGA	2 cut(s)	2184, 3172
PciI	ACATGT	2 cut(s)	1122, 2040
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PctI	GAATGC	3 cut(s)	812, 1513, 2125
PfeI	GAWTC	6 cut(s)	797, 1057, 1088, 1363, 2721, 3163
PflFI	GACNNNGTC	3 cut(s)	332, 907, 2946
PleI	GAGTC	5 cut(s)	439, 1904, 2189, 2237, 2529
PluTI	GGCGCC	1 cut(s)	467
PpsI	GAGTC	5 cut(s)	439, 1904, 2189, 2237, 2529
Ppu21I	YACGTR	1 cut(s)	2460
PscI	ACATGT	2 cut(s)	1122, 2040
Psp6I	CCWGG	5 cut(s)	1638, 1654, 1660, 1963, 2426
PspGI	CCWGG	5 cut(s)	1638, 1654, 1660, 1963, 2426
PspN4I	GGNNCC	4 cut(s)	465, 497, 1653, 2438
PspPI	GGNCC	3 cut(s)	230, 1652, 1658
PstI	CTGCAG	1 cut(s)	2490
PsyI	GACNNNGTC	3 cut(s)	332, 907, 2946
PvuII	CAGCTG	2 cut(s)	2485, 2673
RsaI	GTAC	2 cut(s)	969, 2501
RsaNI	GTAC	2 cut(s)	968, 2500
SaqAI	TTAA	9 cut(s)	534, 606, 921, 1190, 1610, 1719, 2844, 2960, 3062
Sau3AI	GATC	7 cut(s)	210, 235, 281, 971, 1291, 1824, 1900
Sau96I	GGNCC	3 cut(s)	230, 1652, 1658
SchI	GAGTC	5 cut(s)	440, 1905, 2190, 2238, 2529
ScrFI	CCNGG	7 cut(s)	233, 321, 1640, 1656, 1662, 1965, 2428
SduI	GDGCHC	7 cut(s)	204, 380, 498, 574, 1138, 1771, 2328
SfaNI	GCATC	5 cut(s)	754, 1508, 1588, 2059, 2335
SfcI	CTRYAG	3 cut(s)	945, 2486, 2991
SfoI	GGCGCC	1 cut(s)	465
SinI	GGWCC	2 cut(s)	1652, 1658
SmlI	CTYRAG	3 cut(s)	671, 695, 2783
SmoI	CTYRAG	3 cut(s)	671, 695, 2783
SphI	GCATGC	1 cut(s)	371
SspDI	GGCGCC	1 cut(s)	463
SspMI	CTAG	7 cut(s)	353, 1437, 1632, 2339, 2366, 2519, 3237
StyD4I	CCNGG	7 cut(s)	231, 319, 1638, 1654, 1660, 1963, 2426
StyI	CCWWGG	1 cut(s)	2350
TaaI	ACNGT	8 cut(s)	994, 1021, 1403, 1544, 1724, 1777, 2510, 3203
TaiI	ACGT	3 cut(s)	908, 1084, 2462
TaqI	TCGA	7 cut(s)	1412, 1899, 2202, 2310, 2624, 3026, 3212
TatI	WGTACW	1 cut(s)	2499
TauI	GCSGC	9 cut(s)	164, 173, 176, 303, 359, 614, 1622, 2058, 2358
TfiI	GAWTC	6 cut(s)	797, 1057, 1088, 1363, 2721, 3163
Tru1I	TTAA	9 cut(s)	534, 606, 921, 1190, 1610, 1719, 2844, 2960, 3062
Tru9I	TTAA	9 cut(s)	534, 606, 921, 1190, 1610, 1719, 2844, 2960, 3062
TscAI	CASTG	4 cut(s)	146, 1729, 1782, 3208
TseFI	GTSAC	4 cut(s)	334, 994, 1544, 1754
Tsp45I	GTSAC	4 cut(s)	334, 994, 1544, 1754
TspGWI	ACGGA	2 cut(s)	2163, 2541
TspRI	CASTG	4 cut(s)	146, 1729, 1782, 3208
Tth111I	GACNNNGTC	3 cut(s)	332, 907, 2946
VneI	GTGCAC	2 cut(s)	200, 1767
VpaK11BI	GGWCC	2 cut(s)	1652, 1658
XapI	RAATTY	4 cut(s)	593, 1487, 1671, 1728
XbaI	TCTAGA	2 cut(s)	1436, 3236
XceI	RCATGY	3 cut(s)	371, 1126, 2044
XmiI	GTMKAC	1 cut(s)	1016
XspI	CTAG	7 cut(s)	353, 1437, 1632, 2339, 2366, 2519, 3237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.