RchiOBHm_Chr6g0312061

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0007813
Physical Location & Seq
Forward (+)
68805419 .. 68808871
3453 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28069

Sequence Viewer

Length: 3060 bp
ATGCAGTTGCACACCAATCTCCGACCCAAATCAATTTTCTTCTCCACCAAAAACCACAAAACCCTTCTCCCTCTCTTCAATTTCTCTTCTCTCTCCAACCCCATCTCTCACTCGCAACCCTCTTCTTCATCTTCTCCATGGTTCTCTATCCTCCGCTCCGCCATTGCCAATACAGACTTGCCCCTCGGCAAGCGCGCCCACGCCCTTATGTTAACCTCAGGGGAATGCCAAGACCATTTTCTAATCAACAATCTCATCACCATGTATTCGAAATGCAGGTCGCTCACGTATGCACGCCACCTGTTCGATAAAAGTCCTGACCGAGACCTGGTCACCTGGAATGCCATTCTAGCAGCCTATGCGCAAGCTGGGGGCTCTGTGGTTGAGAATGTTCAAGAGGGGCTTGGCCTTTTCCGGCGGCTTCGCGAGTCTGTTGTGTTCACCAGTCGGCACACTTTGGCTTCCGTTCTGAAGCTGTGTTTGCTGTCGGGGCGTGTTTGGATTTCGGAGGCTGTTCAGGGGTACGCTGTGAAAGTTGGGTTGGAGTGGGATGTGTTTGTTTCGGGTACTCTGGTGAATGTGTATTGTAAACTCAGAAGAGTTAAGGAGGCTCGGGCTTTGTTTGATGGGATGCTGGAAAGGGATGTTGTGTTGTGGAACACAATGCTGAAGGCATATGTGGAAATGGGTCTTCATGAAGAAGCACTTGCTCTTTTCTCCAAGTTTCACCGGAGTGGATTGGGTCCTGATGATGTCAGTGTGCGTTGTGTTCTTAGTGGGATTCACGAAGTTGATTATGATGAAGGCAAGAGGCACATGGAGGAGGTTCAAGCATATGCAGCAAAGCTGGGGGAGTTTATAACTAATGTGGATGATGAAGCCCATCCACCAAGCTTATGTGTTCCCACTACTAATTCCGACATATTTTTGTGGAACAAGACATTGTCCAAGTATATCCGAGCTGGTGAAAATTGGGCTGCGATAGAGTTCTTTAGAAATATGATTAGATCAAAAGTGGGATATGACAGTGTGACATTAGTAATTATTCTATCTGCGATTGTAGGCACAAATAATTTGGAGGTGGGGAAACAGATTCATGGTGCTGCTTTGAAATCAGATTTTGGTTCTGTTCTTTTGGTAGCAAATAGCCTTATCAACATGTATTCAAAGGCTCGCTGTGTTCACTTTGCGAGAGCAGTATTCAATCACATGAAAGAAGTGGACCTAGTTTCATGGAACTCGATGATATCATGTTATGCTCAAAGCAGTTCAGGAGAGGAATCAATAAATCTATTTATAGGTTTATTACGGGATGGTCTAAGACCTGATCAATTTACAATTGCAAGTATTTTAAGGGCTTGCTCCTCTCTTCAAGAAGGGTTGCATCTCAGTGAACAGGTTCATGTTCATGCAATAAAGAACGGTATTGCTGCTGACAGATTTGTTTCAACAGCTCTTATTGATGTTTATTCTAGAAGTGGAAAGATGGACGAGGCAGAGGCCCTTTTAGATAACAAAGTTAAATTCGATCTGGCATCTTGGAATGCGTTGATGTTTGGTTACATAAAGAGTAATGACAGTCACAAAGCACTACAACTTATGAGGATGATTCATGAAGGTGGAAAGAGAGTAGATGAGATTACTCTGGCAACTGTTGCTAAGGCCACTAGTTGCCTGGTAGCGTTGGTGCCGGGGAAGCAAATTCATGCTCATGTCATAAAAACAGGGTATTCAAAGGACTTATATGTTAACAGCAGTATTCTAGATATGTACATAAAATGTGGAGACATGAAAAGTGCACACACAGTTTTCAATGACATTCCTGCACCTGATGATGTTGCGTGGACAACTCTAATCTCAGGATGTTTAGAAAATGGAGATGAAGGGCGCTCTGTGTCTATATACCATCAGATGAGGCAGTCAGGAGTTCAGCCTGATGAATACACCTTAGCTACCTTAGTCAAAGCCGCCTCTTGTCTGACAGCATTGGAACAAGGGAAACAGATACATGCAGATGCAATAAAGTTGGAATATTCCTCAGACCCTTATGTTGCGACATCACTTGTTGACATGTACGCCAAGTGCGGTAACATAGAAGGTGCATATCGTTTATTCAGAAGGATGGATGTCGGGAGCATTGTTCTGTGGAATGCCATGTTGGTGGGTTTAGCTCAACATGGAGACGCTGAAGAAGCACTAAATCTTTTCAGAGTCATGAAATCTAATAACATTTTGCCTGATAGGGTTACTTTCATTGGAGTTCTTTCTGCTTGCAGCCACTCTGGTTTAGTTTCTGAAGCTTACGAGCATTTTTCTTCAATGCAAAGAGATTACGGCATTGAACCTGAGATCGAGCACTACTCTTGTCTAGTCGATGCCCTTGGCCGCGCAAGGCGTGTTCAAGAGGCAGAAAAGCTGATAGCATCAATGCCATTTGAAGCTTCTGCTTCAATGTACAGAGCCCTGCTTGGTGCTTGCAGGGTTCAAGGGGACACAGAAACAGGAAAACGAGTAGCAGAACAGCTCTTGGCTATTGAGCCAACTGACTCATCCGCGTATGTTCTCATATCCAATATGAATGCTGCTGCCAACCAGTGGGATGCTGTGAACGATGCTCGTCAAATGATGAAACAGAAGAATGTAAAGAAAGAACCAGGTTTCAGTTGGATGGATGTGAAGAACAAGGTCCATTTGTTTGTAGTAGATGACAAATCCCATCCTGAAGCCGATTTGATATACGACAAGTTGGAGGACTTGATGAAACAGATCGGTGAAGAAGGGTATGTCCCTGACACAGAGTTTGTGCTTGCTGATGTTGAAGAAGAGGAAAAAGAGCGAGCCCTATATTACCATAGTGAGAGGCTAGCAATAGCTTATGGACTGATAAGCACTCCCTCATCTGCCATTGTTCGGGTCATTAAGAACCTTAGAGTTTGTGGAGACTGCCATAATGCAATCAAATACATATCAAAGGTTTCTCAAAGAGAAATTGTGGTGAGAGATGCAAATCGCTTCCATCGTTTCAGAAATGGGAGCTGCTCCTGTGGTGATTACTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1771 PAM2 PPR PPR_2 Smr

Protein Analysis

1019

Amino Acids

113.58

Weight (kDa)

6.35

Isoelectric Point (pI)

41.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 214 - 260 5.5e-08 PPR repeat family
PPR_2 PF13041 408 - 455 7.7e-06 PPR repeat family
PPR_2 PF13041 610 - 656 5.7e-09 PPR repeat family
PPR_2 PF13041 712 - 759 3.3e-10 PPR repeat family
PPR PF01535 714 - 744 2.6e-06 PPR repeat
E_motif PF20431 831 - 890 2.3e-15 E motif
Eplus_motif PF20430 896 - 923 1.5e-08 E+ motif
DYW_deaminase PF14432 927 - 1019 7.1e-44 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 860
Acc16I TGCGCA 1 cut(s) 363
Acc36I ACCTGC 1 cut(s) 267
AccB1I GGYRCC 1 cut(s) 1687
AccB7I CCANNNNNTGG 1 cut(s) 2595
AccBSI CCGCTC 1 cut(s) 156
AccII CGCG 4 cut(s) 195, 426, 2388, 2555
AciI CCGC 7 cut(s) 154, 159, 418, 1968, 2085, 2386, 2553
AcoI YGGCCR 1 cut(s) 2383
AcsI RAATTY 2 cut(s) 1523, 1701
AcuI CTGAAG 5 cut(s) 491, 689, 2208, 2316, 2742
AfaI GTAC 5 cut(s) 524, 568, 1772, 2075, 2456
AfiI CCNNNNNNNGG 3 cut(s) 328, 2595, 2910
AflIII ACRYGT 2 cut(s) 1158, 2070
AhlI ACTAGT 1 cut(s) 1667
AjnI CCWGG 4 cut(s) 327, 335, 1674, 2653
AjuI GAANNNNNNNTTGG 8 cut(s) 20, 52, 222, 254, 524, 556, 2141, 2173
AleI CACNNNNGTG 1 cut(s) 732
Alw21I GWGCWC 2 cut(s) 1801, 2358
Alw26I GTCTC 4 cut(s) 318, 1779, 2175, 2934
Alw44I GTGCAC 1 cut(s) 1797
Ama87I CYCGRG 1 cut(s) 612
AoxI GGCC 4 cut(s) 406, 1500, 1662, 2383
ApaLI GTGCAC 1 cut(s) 1797
ApeKI GCWGC 9 cut(s) 353, 839, 977, 1103, 1430, 2274, 2582, 2585, 3036
ApoI RAATTY 2 cut(s) 1523, 1701
ArsI GACNNNNNNTTYG 4 cut(s) 263, 295, 2783, 2815
Asp700I GAANNNNTTC 1 cut(s) 1398
AspLEI GCGC 5 cut(s) 195, 197, 364, 1890, 2390
AspS9I GGNCC 4 cut(s) 743, 1222, 1501, 2686
AsuC2I CCSGG 1 cut(s) 1692
AsuHPI GGTGA 9 cut(s) 250, 325, 433, 586, 719, 977, 2783, 3007, 3059
AsuII TTCGAA 1 cut(s) 269
AsuNHI GCTAGC 1 cut(s) 2863
AvaI CYCGRG 1 cut(s) 612
AvaII GGWCC 3 cut(s) 743, 1222, 2686
AxyI CCTNAGG 1 cut(s) 217
BaeGI GKGCMC 1 cut(s) 1801
BaeI ACNNNNGTAYC 2 cut(s) 558, 591
BanI GGYRCC 1 cut(s) 1687
BanII GRGCYC 3 cut(s) 377, 2464, 2842
BbsI GAAGAC 1 cut(s) 683
Bbv12I GWGCWC 2 cut(s) 1801, 2358
BbvI GCAGC 9 cut(s) 365, 851, 964, 1090, 1417, 2286, 2569, 2572, 3023
BceAI ACGGC 1 cut(s) 2350
BciT130I CCWGG 4 cut(s) 329, 337, 1676, 2655
BclI TGATCA 1 cut(s) 1327
BcnI CCSGG 1 cut(s) 1692
BcoDI GTCTC 4 cut(s) 318, 1779, 2175, 2934
BcuI ACTAGT 1 cut(s) 1667
BfaI CTAG 7 cut(s) 350, 1226, 1473, 1668, 1763, 2369, 2864
BfoI RGCGCY 1 cut(s) 1891
BfuAI ACCTGC 1 cut(s) 267
Bme1390I CCNGG 5 cut(s) 329, 337, 1676, 1692, 2655
Bme18I GGWCC 3 cut(s) 743, 1222, 2686
BmeT110I CYCGRG 1 cut(s) 612
BmgT120I GGNCC 4 cut(s) 743, 1222, 1501, 2686
BmiI GGNNCC 2 cut(s) 744, 1689
BmrFI CCNGG 5 cut(s) 329, 337, 1676, 1692, 2655
BmsI GCATC 9 cut(s) 621, 1393, 1544, 2005, 2365, 2432, 2590, 2602, 2992
BmtI GCTAGC 1 cut(s) 2867
BpiI GAAGAC 1 cut(s) 683
BplI GAGNNNNNCTC 2 cut(s) 2345, 2377
Bpu10I CCTNAGC 2 cut(s) 1659, 1948
Bpu14I TTCGAA 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 1692
BsaAI YACGTR 1 cut(s) 288
BsaBI GATNNNNATC 1 cut(s) 3006
BsaI GGTCTC 1 cut(s) 318
BsaJI CCNNGG 4 cut(s) 137, 184, 1691, 2380
BsaWI WCCGGW 1 cut(s) 729
Bsc4I CCNNNNNNNGG 3 cut(s) 328, 2595, 2910
Bse1I ACTGG 3 cut(s) 444, 2593, 3059
Bse21I CCTNAGG 1 cut(s) 217
Bse3DI GCAATG 1 cut(s) 162
Bse8I GATNNNNATC 1 cut(s) 3006
BseBI CCWGG 4 cut(s) 329, 337, 1676, 2655
BseDI CCNNGG 4 cut(s) 137, 184, 1691, 2380
BseJI GATNNNNATC 1 cut(s) 3006
BseLI CCNNNNNNNGG 3 cut(s) 328, 2595, 2910
BseMI GCAATG 1 cut(s) 162
BseMII CTCAG 6 cut(s) 231, 607, 1402, 1872, 2052, 2337
BseNI ACTGG 3 cut(s) 444, 2593, 3059
BsePI GCGCGC 1 cut(s) 193
BseRI GAGGAG 2 cut(s) 836, 1354
BseSI GKGCMC 1 cut(s) 1801
BseXI GCAGC 9 cut(s) 365, 851, 964, 1090, 1417, 2286, 2569, 2572, 3023
BseYI CCCAGC 2 cut(s) 368, 847
BsgI GTGCAG 1 cut(s) 1809
Bsh1236I CGCG 4 cut(s) 195, 426, 2388, 2555
BshFI GGCC 4 cut(s) 408, 1502, 1664, 2385
BshNI GGYRCC 1 cut(s) 1687
BsiHKAI GWGCWC 2 cut(s) 1801, 2358
BsiHKCI CYCGRG 1 cut(s) 612
BsiSI CCGG 3 cut(s) 415, 730, 1691
BslFI GGGAC 2 cut(s) 2504, 2771
BslI CCNNNNNNNGG 3 cut(s) 328, 2595, 2910
BsmAI GTCTC 4 cut(s) 318, 1779, 2175, 2934
BsmBI CGTCTC 1 cut(s) 2175
BsmFI GGGAC 2 cut(s) 2504, 2771
BsmI GAATGC 5 cut(s) 230, 346, 1549, 2155, 2584
BsnI GGCC 4 cut(s) 408, 1502, 1664, 2385
Bso31I GGTCTC 1 cut(s) 318
BsoBI CYCGRG 1 cut(s) 612
Bsp119I TTCGAA 1 cut(s) 269
Bsp1286I GDGCHC 5 cut(s) 377, 1801, 2358, 2464, 2842
Bsp1407I TGTACA 2 cut(s) 1770, 2454
Bsp143I GATC 5 cut(s) 1007, 1327, 1528, 2349, 2766
Bsp19I CCATGG 1 cut(s) 137
Bsp68I TCGCGA 1 cut(s) 426
BspACI CCGC 7 cut(s) 154, 159, 418, 1968, 2085, 2386, 2553
BspANI GGCC 4 cut(s) 408, 1502, 1664, 2385
BspCNI CTCAG 6 cut(s) 230, 606, 1401, 1871, 2051, 2338
BspFNI CGCG 4 cut(s) 195, 426, 2388, 2555
BspHI TCATGA 3 cut(s) 694, 1612, 2214
BspLI GGNNCC 2 cut(s) 744, 1689
BspMI ACCTGC 1 cut(s) 267
BspOI GCTAGC 1 cut(s) 2867
BspT104I TTCGAA 1 cut(s) 269
BspT107I GGYRCC 1 cut(s) 1687
BspTNI GGTCTC 1 cut(s) 318
BsrBI CCGCTC 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 162
BsrGI TGTACA 2 cut(s) 1770, 2454
BsrI ACTGG 3 cut(s) 444, 2593, 3059
BssECI CCNNGG 4 cut(s) 137, 184, 1691, 2380
BssHII GCGCGC 1 cut(s) 193
BssMI GATC 5 cut(s) 1007, 1327, 1528, 2349, 2766
BssT1I CCWWGG 2 cut(s) 137, 2380
Bst2UI CCWGG 4 cut(s) 329, 337, 1676, 2655
Bst4CI ACNGT 5 cut(s) 1028, 1424, 1580, 1654, 1807
Bst6I CTCTTC 6 cut(s) 80, 91, 127, 592, 1374, 2817
BstAPI GCANNNNNTGC 2 cut(s) 359, 1655
BstAUI TGTACA 2 cut(s) 1770, 2454
BstBAI YACGTR 1 cut(s) 288
BstBI TTCGAA 1 cut(s) 269
BstDSI CCRYGG 1 cut(s) 137
BstEII GGTNACC 1 cut(s) 331
BstFNI CGCG 4 cut(s) 195, 426, 2388, 2555
BstH2I RGCGCY 1 cut(s) 1891
BstHHI GCGC 5 cut(s) 195, 197, 364, 1890, 2390
BstKTI GATC 5 cut(s) 1010, 1330, 1531, 2352, 2769
BstMAI GTCTC 4 cut(s) 318, 1779, 2175, 2934
BstMBI GATC 5 cut(s) 1007, 1327, 1528, 2349, 2766
BstMWI GCNNNNNNNGC 8 cut(s) 350, 359, 481, 490, 839, 1655, 1696, 2192
BstNI CCWGG 4 cut(s) 329, 337, 1676, 2655
BstNSI RCATGY 3 cut(s) 1162, 2012, 2074
BstPI GGTNACC 1 cut(s) 331
BstSCI CCNGG 5 cut(s) 327, 335, 1674, 1690, 2653
BstSLI GKGCMC 1 cut(s) 1801
BstUI CGCG 4 cut(s) 195, 426, 2388, 2555
BstV1I GCAGC 9 cut(s) 365, 851, 964, 1090, 1417, 2286, 2569, 2572, 3023
BstV2I GAAGAC 1 cut(s) 683
BstXI CCANNNNNNTGG 1 cut(s) 2161
Bsu36I CCTNAGG 1 cut(s) 217
BsuRI GGCC 4 cut(s) 408, 1502, 1664, 2385
BtgI CCRYGG 1 cut(s) 137
BtsIMutI CAGTG 4 cut(s) 763, 1033, 1396, 2600
BtuMI TCGCGA 1 cut(s) 426
BveI ACCTGC 1 cut(s) 267
CciI TCATGA 3 cut(s) 694, 1612, 2214
CfoI GCGC 5 cut(s) 195, 197, 364, 1890, 2390
Cfr13I GGNCC 4 cut(s) 743, 1222, 1501, 2686
CseI GACGC 1 cut(s) 2192
CsiI ACCWGGT 2 cut(s) 327, 2653
Csp6I GTAC 5 cut(s) 523, 567, 1771, 2074, 2455
CviQI GTAC 5 cut(s) 523, 567, 1771, 2074, 2455
DpnI GATC 5 cut(s) 1009, 1329, 1530, 2351, 2768
DpnII GATC 5 cut(s) 1007, 1327, 1528, 2349, 2766
EaeI YGGCCR 1 cut(s) 2383
Eam1104I CTCTTC 6 cut(s) 80, 91, 127, 592, 1374, 2817
EarI CTCTTC 6 cut(s) 80, 91, 127, 592, 1374, 2817
EciI GGCGGA 1 cut(s) 148
Eco130I CCWWGG 2 cut(s) 137, 2380
Eco24I GRGCYC 3 cut(s) 377, 2464, 2842
Eco31I GGTCTC 1 cut(s) 318
Eco32I GATATC 1 cut(s) 1248
Eco47I GGWCC 3 cut(s) 743, 1222, 2686
Eco57I CTGAAG 5 cut(s) 491, 689, 2208, 2316, 2742
Eco81I CCTNAGG 1 cut(s) 217
Eco88I CYCGRG 1 cut(s) 612
Eco91I GGTNACC 1 cut(s) 331
EcoO109I RGGNCCY 2 cut(s) 743, 1501
EcoO65I GGTNACC 1 cut(s) 331
EcoRII CCWGG 4 cut(s) 327, 335, 1674, 2653
EcoRV GATATC 1 cut(s) 1248
EcoT14I CCWWGG 2 cut(s) 137, 2380
EcoT38I GRGCYC 3 cut(s) 377, 2464, 2842
ErhI CCWWGG 2 cut(s) 137, 2380
Esp3I CGTCTC 1 cut(s) 2175
FalI AAGNNNNNCTT 4 cut(s) 387, 419, 690, 722
FaqI GGGAC 2 cut(s) 2504, 2771
FauNDI CATATG 2 cut(s) 676, 835
FbaI TGATCA 1 cut(s) 1327
FriOI GRGCYC 3 cut(s) 377, 2464, 2842
FspBI CTAG 7 cut(s) 350, 1226, 1473, 1668, 1763, 2369, 2864
FspI TGCGCA 1 cut(s) 363
GlaI GCGC 5 cut(s) 194, 196, 363, 1889, 2389
GsaI CCCAGC 2 cut(s) 372, 851
HaeII RGCGCY 1 cut(s) 1891
HaeIII GGCC 4 cut(s) 408, 1502, 1664, 2385
HapII CCGG 3 cut(s) 415, 730, 1691
HgaI GACGC 1 cut(s) 2192
HhaI GCGC 5 cut(s) 195, 197, 364, 1890, 2390
Hin6I GCGC 5 cut(s) 193, 195, 362, 1888, 2388
HinP1I GCGC 5 cut(s) 193, 195, 362, 1888, 2388
HincII GTYRAC 3 cut(s) 213, 1750, 2068
HindII GTYRAC 3 cut(s) 213, 1750, 2068
HindIII AAGCTT 3 cut(s) 892, 2298, 2439
HinfI GANTC 7 cut(s) 428, 781, 1093, 1280, 1609, 2211, 2546
HpaI GTTAAC 2 cut(s) 213, 1750
HpaII CCGG 3 cut(s) 415, 730, 1691
HphI GGTGA 9 cut(s) 250, 325, 433, 586, 719, 977, 2783, 3007, 3059
HpyAV CCTTC 9 cut(s) 74, 664, 797, 1370, 1610, 1877, 2090, 2112, 2771
HpyCH4III ACNGT 5 cut(s) 1028, 1424, 1580, 1654, 1807
HpyCH4IV ACGT 1 cut(s) 287
HpyF10VI GCNNNNNNNGC 8 cut(s) 350, 359, 481, 490, 839, 1655, 1696, 2192
HpySE526I ACGT 1 cut(s) 287
HspAI GCGC 5 cut(s) 193, 195, 362, 1888, 2388
Ksp22I TGATCA 1 cut(s) 1327
KspAI GTTAAC 2 cut(s) 213, 1750
Kzo9I GATC 5 cut(s) 1007, 1327, 1528, 2349, 2766
LmnI GCTCC 5 cut(s) 161, 1367, 2133, 3033, 3044
Lsp1109I GCAGC 9 cut(s) 365, 851, 964, 1090, 1417, 2286, 2569, 2572, 3023
LweI GCATC 9 cut(s) 621, 1393, 1544, 2005, 2365, 2432, 2590, 2602, 2992
MabI ACCWGGT 2 cut(s) 327, 2653
MaeI CTAG 7 cut(s) 350, 1226, 1473, 1668, 1763, 2369, 2864
MaeII ACGT 1 cut(s) 287
MaeIII GTNAC 6 cut(s) 331, 1030, 1559, 1580, 2087, 2245
MalI GATC 5 cut(s) 1009, 1329, 1530, 2351, 2768
MbiI CCGCTC 1 cut(s) 156
MboI GATC 5 cut(s) 1007, 1327, 1528, 2349, 2766
MfeI CAATTG 1 cut(s) 1338
MhlI GDGCHC 5 cut(s) 377, 1801, 2358, 2464, 2842
MlyI GAGTC 3 cut(s) 437, 2220, 2540
MmeI TCCRAC 7 cut(s) 46, 120, 522, 942, 2007, 2645, 2727
MroXI GAANNNNTTC 1 cut(s) 1398
MseI TTAA 6 cut(s) 212, 603, 1352, 1521, 1749, 2919
MslI CAYNNNNRTG 8 cut(s) 260, 732, 1389, 1407, 1617, 1710, 2013, 2159
MspI CCGG 3 cut(s) 415, 730, 1691
MspR9I CCNGG 5 cut(s) 329, 337, 1676, 1692, 2655
MunI CAATTG 1 cut(s) 1338
Mva1269I GAATGC 5 cut(s) 230, 346, 1549, 2155, 2584
MvaI CCWGG 4 cut(s) 329, 337, 1676, 2655
MvnI CGCG 4 cut(s) 195, 426, 2388, 2555
MwoI GCNNNNNNNGC 8 cut(s) 350, 359, 481, 490, 839, 1655, 1696, 2192
NciI CCSGG 1 cut(s) 1692
NcoI CCATGG 1 cut(s) 137
NdeI CATATG 2 cut(s) 676, 835
NdeII GATC 5 cut(s) 1007, 1327, 1528, 2349, 2766
NheI GCTAGC 1 cut(s) 2863
NlaIV GGNNCC 2 cut(s) 744, 1689
NmeAIII GCCGAG 1 cut(s) 165
NmuCI GTSAC 3 cut(s) 331, 1030, 1580
NruI TCGCGA 1 cut(s) 426
NsbI TGCGCA 1 cut(s) 363
NspI RCATGY 3 cut(s) 1162, 2012, 2074
NspV TTCGAA 1 cut(s) 269
OliI CACNNNNGTG 1 cut(s) 732
PagI TCATGA 3 cut(s) 694, 1612, 2214
PauI GCGCGC 1 cut(s) 193
PciI ACATGT 2 cut(s) 1158, 2070
PcsI WCGNNNNNNNCGW 1 cut(s) 3016
PctI GAATGC 5 cut(s) 230, 346, 1549, 2155, 2584
PdmI GAANNNNTTC 1 cut(s) 1398
PfeI GAWTC 4 cut(s) 781, 1093, 1280, 1609
PflFI GACNNNGTC 2 cut(s) 329, 943
PflMI CCANNNNNTGG 1 cut(s) 2595
PleI GAGTC 3 cut(s) 436, 2219, 2540
PpsI GAGTC 3 cut(s) 436, 2219, 2540
Ppu21I YACGTR 1 cut(s) 288
PpuMI RGGWCCY 1 cut(s) 743
PscI ACATGT 2 cut(s) 1158, 2070
PsiI TTATAA 1 cut(s) 860
Psp5II RGGWCCY 1 cut(s) 743
Psp6I CCWGG 4 cut(s) 327, 335, 1674, 2653
PspEI GGTNACC 1 cut(s) 331
PspFI CCCAGC 2 cut(s) 368, 847
PspGI CCWGG 4 cut(s) 327, 335, 1674, 2653
PspN4I GGNNCC 2 cut(s) 744, 1689
PspPI GGNCC 4 cut(s) 743, 1222, 1501, 2686
PspPPI RGGWCCY 1 cut(s) 743
PsyI GACNNNGTC 2 cut(s) 329, 943
PteI GCGCGC 1 cut(s) 193
RruI TCGCGA 1 cut(s) 426
RsaI GTAC 5 cut(s) 524, 568, 1772, 2075, 2456
RsaNI GTAC 5 cut(s) 523, 567, 1771, 2074, 2455
RseI CAYNNNNRTG 8 cut(s) 260, 732, 1389, 1407, 1617, 1710, 2013, 2159
SaqAI TTAA 6 cut(s) 212, 603, 1352, 1521, 1749, 2919
Sau3AI GATC 5 cut(s) 1007, 1327, 1528, 2349, 2766
Sau96I GGNCC 4 cut(s) 743, 1222, 1501, 2686
SchI GAGTC 3 cut(s) 437, 2220, 2540
ScrFI CCNGG 5 cut(s) 329, 337, 1676, 1692, 2655
SduI GDGCHC 5 cut(s) 377, 1801, 2358, 2464, 2842
SexAI ACCWGGT 2 cut(s) 327, 2653
SfaNI GCATC 9 cut(s) 621, 1393, 1544, 2005, 2365, 2432, 2590, 2602, 2992
SfuI TTCGAA 1 cut(s) 269
SinI GGWCC 3 cut(s) 743, 1222, 2686
SmiMI CAYNNNNRTG 8 cut(s) 260, 732, 1389, 1407, 1617, 1710, 2013, 2159
SpeI ACTAGT 1 cut(s) 1667
SsiI CCGC 7 cut(s) 154, 159, 418, 1968, 2085, 2386, 2553
SspI AATATT 1 cut(s) 2033
SspMI CTAG 7 cut(s) 350, 1226, 1473, 1668, 1763, 2369, 2864
StyD4I CCNGG 5 cut(s) 327, 335, 1674, 1690, 2653
StyI CCWWGG 2 cut(s) 137, 2380
TaaI ACNGT 5 cut(s) 1028, 1424, 1580, 1654, 1807
TaiI ACGT 1 cut(s) 290
TaqI TCGA 6 cut(s) 269, 306, 1241, 1527, 2352, 2373
TaqII GACCGA 1 cut(s) 336
TatI WGTACW 2 cut(s) 1770, 2454
TauI GCSGC 3 cut(s) 421, 1970, 2388
TfiI GAWTC 4 cut(s) 781, 1093, 1280, 1609
Tru1I TTAA 6 cut(s) 212, 603, 1352, 1521, 1749, 2919
Tru9I TTAA 6 cut(s) 212, 603, 1352, 1521, 1749, 2919
TscAI CASTG 4 cut(s) 763, 1033, 1396, 2600
TseFI GTSAC 3 cut(s) 331, 1030, 1580
TseI GCWGC 9 cut(s) 353, 839, 977, 1103, 1430, 2274, 2582, 2585, 3036
Tsp45I GTSAC 3 cut(s) 331, 1030, 1580
TspGWI ACGGA 1 cut(s) 454
TspRI CASTG 4 cut(s) 763, 1033, 1396, 2600
Tth111I GACNNNGTC 2 cut(s) 329, 943
Van91I CCANNNNNTGG 1 cut(s) 2595
VneI GTGCAC 1 cut(s) 1797
VpaK11BI GGWCC 3 cut(s) 743, 1222, 2686
XapI RAATTY 2 cut(s) 1523, 1701
XbaI TCTAGA 2 cut(s) 1472, 1762
XceI RCATGY 3 cut(s) 1162, 2012, 2074
XcmI CCANNNNNNNNNTGG 2 cut(s) 1672, 2661
XmnI GAANNNNTTC 1 cut(s) 1398
XspI CTAG 7 cut(s) 350, 1226, 1473, 1668, 1763, 2369, 2864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.