Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005408

Physical Location & Seq

Genomic Coordinates Reverse (-)

23972957 .. 23973648

Gene Structure 692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g31170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAATCCAATTGCTTTCTCTCTCCTCCCCCTCTCCTTGCTCCGACGTCATTGGCCTCACCCCTTAGATCCCTCTCCCCATCGTCACCGGTGCATCTACAACAACCCACTCCATGAAGATGAAGAACAAGTAGTCGCCGTCGAATTCGATACTCGGCTCCATTTATCCTACGACGATCCGAATGATAAACATGTGGGTCTCGATATTGAGAGCTTGAATTCGATCAAGCCCGCCAAACCGATCGAGCAAGATGTGGATTTGAGGATCGGGACGGCAAATAACGATGGAGTTAAAGCTCTGTTTGGGTTAGACAGGTGTCAGAATTTGGTAGGTGGTACATGTTTGGCACTGGGTTTTTGGGCACAGCAGATTTCCTTCCGTAGTTATCAATACAATGGATACTCGACTGAGAGTACTACTGGCCAGTCATCATTCAAAGCGTTGCGGTTTGATATAAATGATCTGACTACGACGTCTTGCCGACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0016020 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

163

Amino Acids

18.34

Weight (kDa)

5.74

Isoelectric Point (pI)

43.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	39 - 90	3.5e-09	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55830
fragaria_vesca	FvH4_2g31170 FvH4_3g42990 FvH4_4g09342 FvH4_4g11641
malus_domestica	MD03G1026600.v1.1 MD11G1030600.v1.1
prunus_persica	Prupe.6G024000_v2.0.a1
pyrus_communis	pycom03g02180 pycom11g02420 pycom11g02430 pycom11g02480
rosa_chinensis	RchiOBHm_Chr5g0077031
rosa_laevigata	RLG00000036643
rosa_multiflora	Rmu_sc0003323.1_g000008 Rmu_sc0018789.1_g000001 Rmu_ssc0000470.1_g000027
rosa_roxburghii	Rroxscaffold_1G00005100
rosa_rugosa	Rorug05G0450500
rosa_samantha	Rh5AG505100 Rh5BG416900 Rh5BG526800 Rh5CG441400 Rh5CG550600 Rh5DG539000 Rh6AG352200 Rh6CG162900 Rh6DG154500
rosa_wichuraiana	Rw5G047130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	472
AatII	GACGTC	2 cut(s)	49, 476
AciI	CCGC	2 cut(s)	231, 445
AclWI	GGATC	3 cut(s)	62, 170, 272
AcoI	YGGCCR	1 cut(s)	421
AcsI	RAATTY	3 cut(s)	143, 217, 322
AcyI	GRCGYC	2 cut(s)	46, 473
AfaI	GTAC	2 cut(s)	337, 415
AflIII	ACRYGT	2 cut(s)	190, 338
AgeI	ACCGGT	1 cut(s)	87
AgsI	TTSAA	2 cut(s)	217, 436
AluBI	AGCT	2 cut(s)	213, 296
AluI	AGCT	2 cut(s)	213, 296
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	3 cut(s)	62, 170, 272
AoxI	GGCC	2 cut(s)	53, 421
ApoI	RAATTY	3 cut(s)	143, 217, 322
AsiGI	ACCGGT	1 cut(s)	87
AsuHPI	GGTGA	2 cut(s)	50, 77
BaeGI	GKGCMC	1 cut(s)	364
BalI	TGGCCA	1 cut(s)	423
BccI	CCATC	2 cut(s)	87, 278
BceAI	ACGGC	2 cut(s)	122, 288
BciVI	GTATCC	1 cut(s)	392
BcoDI	GTCTC	1 cut(s)	203
BfuI	GTATCC	1 cut(s)	392
BmcAI	AGTACT	1 cut(s)	415
BmiI	GGNNCC	1 cut(s)	158
BmrI	ACTGGG	1 cut(s)	359
BmsI	GCATC	1 cut(s)	102
BmuI	ACTGGG	1 cut(s)	359
BoxI	GACNNNNGTC	1 cut(s)	315
BsaHI	GRCGYC	2 cut(s)	46, 473
BsaI	GGTCTC	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	87
Bse118I	RCCGGY	1 cut(s)	87
Bse1I	ACTGG	3 cut(s)	354, 424, 424
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	3 cut(s)	354, 424, 424
BseRI	GAGGAG	1 cut(s)	14
BseSI	GKGCMC	1 cut(s)	364
Bsh1285I	CGRYCG	1 cut(s)	243
BshFI	GGCC	2 cut(s)	55, 423
BshTI	ACCGGT	1 cut(s)	87
BsiEI	CGRYCG	1 cut(s)	243
BsiSI	CCGG	1 cut(s)	88
BslFI	GGGAC	1 cut(s)	283
BsmAI	GTCTC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	283
BsnI	GGCC	2 cut(s)	55, 423
Bso31I	GGTCTC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	6 cut(s)	67, 175, 222, 240, 264, 460
BspACI	CCGC	2 cut(s)	231, 445
BspANI	GGCC	2 cut(s)	55, 423
BspCNI	CTCAG	1 cut(s)	400
BspLI	GGNNCC	1 cut(s)	158
BspPI	GGATC	3 cut(s)	62, 170, 272
BspTNI	GGTCTC	1 cut(s)	203
BsrFI	RCCGGY	1 cut(s)	87
BsrI	ACTGG	3 cut(s)	354, 424, 424
BssAI	RCCGGY	1 cut(s)	87
BssMI	GATC	6 cut(s)	67, 175, 222, 240, 264, 460
BssNI	GRCGYC	2 cut(s)	46, 473
BstACI	GRCGYC	2 cut(s)	46, 473
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	2 cut(s)	64, 408
BstKTI	GATC	6 cut(s)	70, 178, 225, 243, 267, 463
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	6 cut(s)	67, 175, 222, 240, 264, 460
BstMCI	CGRYCG	1 cut(s)	243
BstNSI	RCATGY	2 cut(s)	194, 342
BstPAI	GACNNNNGTC	1 cut(s)	315
BstSLI	GKGCMC	1 cut(s)	364
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuI	GTATCC	1 cut(s)	392
BsuRI	GGCC	2 cut(s)	55, 423
BtsIMutI	CAGTG	1 cut(s)	347
Cac8I	GCNNGC	1 cut(s)	231
Cfr10I	RCCGGY	1 cut(s)	87
Csp6I	GTAC	2 cut(s)	336, 414
CspAI	ACCGGT	1 cut(s)	87
CviAII	CATG	3 cut(s)	113, 191, 339
CviJI	RGCY	6 cut(s)	55, 157, 213, 229, 296, 423
CviKI_1	RGCY	6 cut(s)	55, 157, 213, 229, 296, 423
CviQI	GTAC	2 cut(s)	336, 414
DdeI	CTNAG	2 cut(s)	64, 408
DpnI	GATC	6 cut(s)	69, 177, 224, 242, 266, 462
DpnII	GATC	6 cut(s)	67, 175, 222, 240, 264, 460
DrdI	GACNNNNNNGTC	1 cut(s)	472
DseDI	GACNNNNNNGTC	1 cut(s)	472
EaeI	YGGCCR	1 cut(s)	421
Eco31I	GGTCTC	1 cut(s)	203
EcoRI	GAATTC	2 cut(s)	143, 217
FaeI	CATG	3 cut(s)	116, 194, 342
FaiI	YATR	4 cut(s)	114, 192, 340, 455
FaqI	GGGAC	1 cut(s)	283
FatI	CATG	3 cut(s)	112, 190, 338
FauI	CCCGC	1 cut(s)	238
HaeIII	GGCC	2 cut(s)	55, 423
HapII	CCGG	1 cut(s)	88
Hin1I	GRCGYC	2 cut(s)	46, 473
Hin1II	CATG	3 cut(s)	116, 194, 342
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	88
HphI	GGTGA	2 cut(s)	50, 77
Hpy188I	TCNGA	4 cut(s)	44, 180, 321, 465
Hpy188III	TCNNGA	2 cut(s)	200, 268
Hpy99I	CGWCG	4 cut(s)	48, 143, 176, 475
HpyAV	CCTTC	1 cut(s)	385
HpyCH4IV	ACGT	2 cut(s)	46, 473
HpyCH4V	TGCA	1 cut(s)	93
HpyF3I	CTNAG	2 cut(s)	64, 408
HpySE526I	ACGT	2 cut(s)	46, 473
Hsp92I	GRCGYC	2 cut(s)	46, 473
Hsp92II	CATG	3 cut(s)	116, 194, 342
Kzo9I	GATC	6 cut(s)	67, 175, 222, 240, 264, 460
LmnI	GCTCC	2 cut(s)	45, 162
LpnPI	CCDG	5 cut(s)	101, 298, 335, 405, 437
LweI	GCATC	1 cut(s)	102
MaeII	ACGT	2 cut(s)	46, 473
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	6 cut(s)	69, 177, 224, 242, 266, 462
MboI	GATC	6 cut(s)	67, 175, 222, 240, 264, 460
MboII	GAAGA	2 cut(s)	128, 134
MfeI	CAATTG	1 cut(s)	9
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	364
MlsI	TGGCCA	1 cut(s)	423
MluCI	AATT	4 cut(s)	9, 143, 217, 322
MluNI	TGGCCA	1 cut(s)	423
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	5 cut(s)	35, 41, 66, 82, 255
Mox20I	TGGCCA	1 cut(s)	423
MscI	TGGCCA	1 cut(s)	423
MseI	TTAA	2 cut(s)	291, 487
MslI	CAYNNNNRTG	1 cut(s)	117
Msp20I	TGGCCA	1 cut(s)	423
MspI	CCGG	1 cut(s)	88
MunI	CAATTG	1 cut(s)	9
NdeII	GATC	6 cut(s)	67, 175, 222, 240, 264, 460
NlaIII	CATG	3 cut(s)	116, 194, 342
NlaIV	GGNNCC	1 cut(s)	158
NmeAIII	GCCGAG	1 cut(s)	133
NmuCI	GTSAC	1 cut(s)	83
NspI	RCATGY	2 cut(s)	194, 342
PciI	ACATGT	2 cut(s)	190, 338
PfeI	GAWTC	1 cut(s)	4
PinAI	ACCGGT	1 cut(s)	87
Ple19I	CGATCG	1 cut(s)	243
PscI	ACATGT	2 cut(s)	190, 338
PshAI	GACNNNNGTC	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	158
PsuI	RGATCY	1 cut(s)	67
PvuI	CGATCG	1 cut(s)	243
RsaI	GTAC	2 cut(s)	337, 415
RsaNI	GTAC	2 cut(s)	336, 414
RseI	CAYNNNNRTG	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	291, 487
Sau3AI	GATC	6 cut(s)	67, 175, 222, 240, 264, 460
ScaI	AGTACT	1 cut(s)	415
SduI	GDGCHC	1 cut(s)	364
SetI	ASST	6 cut(s)	49, 215, 298, 317, 334, 476
SfaNI	GCATC	1 cut(s)	102
SgrAI	CRCCGGYG	1 cut(s)	87
SmiMI	CAYNNNNRTG	1 cut(s)	117
Sse9I	AATT	4 cut(s)	9, 143, 217, 322
SsiI	CCGC	2 cut(s)	231, 445
TaiI	ACGT	2 cut(s)	49, 476
TaqI	TCGA	6 cut(s)	141, 147, 201, 221, 243, 404
TasI	AATT	4 cut(s)	9, 143, 217, 322
TatI	WGTACW	1 cut(s)	413
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	291, 487
Tru9I	TTAA	2 cut(s)	291, 487
TscAI	CASTG	1 cut(s)	354
TseFI	GTSAC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	3 cut(s)	17, 129, 135
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	1 cut(s)	354
XapI	RAATTY	3 cut(s)	143, 217, 322
XceI	RCATGY	2 cut(s)	194, 342
ZraI	GACGTC	2 cut(s)	47, 474
ZrmI	AGTACT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.