Rmu_sc0018789.1_g000001

Lectin-domain containing receptor kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018789.1
Physical Location & Seq
Forward (+)
1 .. 1185
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018789.1_g000001.1.cds

Sequence Viewer

Length: 1185 bp
cccattgaccaagatgttgacttgaagagcggaacggcgatcacggcctggattgactacaagaacgaccaagaaacgcttaaggtgtacctgagctactccgggttcaaacccgagacccctgttttgaacgtggggattgatctttctgggtatctgaaggaggttatgtatgtggggttctctgcttcaactgaaggaagcactgagcttcatgagattgagaattggagcttcaggacatctgggtttgtgccgaaaaggcccacattgcatcctcacaatgtgtctgatacttatgtgattgtcagtccaaggctgccggcgccggagaagggacacaagaggcggctcgggctggggcttgggattgccgggccggcgttcttttgtgttgcgctggtggttttcgggtatgtgagtgtgaggaagtggagggaggtgaggagggtgaagagttttaaagcagaggtggtggcagggccgaggcagtttagctatagagagctgagggcagctacaggagggtttcatgggagtaggattattgggcatggcgcatttgggactgtgtacaaggcgtttttcgtggcgtcggggactattgcggcggtgaagaggtccaggcattctcatgaaggtaagactgagtttcttgctgagttgtctattatagcttgcttgaggcacaagaatttagtgcatttgcaagggtggtgtgttgagaaaggtgagttgctgcttgtgtatgatttcatgccgaatggtagtcttgagagagtgctttaccaagaaagtgaggagggtaacttgttggattggcctcataggcaaaatgttgcgattggtttggcgtctgttttgacgtatatgcatcaagaatgtgagcagcaagtgattcatagggatattaagactggtaatgtgttgctggatgggaatttcaatgcaaagcttggtgattttggattggcaaagctcatggatcatgataagagccctgtttcgaccctgacagctggaacaatggggtaccttgcgcccgagtatctccagtacgggaaagcaactgagaagactgatgctttcagctatggtgtggtcatacttgaattggcttgtgggaggagaccaattgagagaattccggattgtcacaaaatggtgaatttggttgattgggtt

Protein Analysis

395

Amino Acids

44.05

Weight (kDa)

8.26

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1032
AccB1I GGYRCC 2 cut(s) 325, 1032
AccBSI CCGCTC 1 cut(s) 30
AccIII TCCGGA 1 cut(s) 1147
AciI CCGC 4 cut(s) 30, 349, 608, 611
AclWI GGATC 1 cut(s) 993
AcsI RAATTY 4 cut(s) 694, 940, 1143, 1168
AcuI CTGAAG 3 cut(s) 179, 216, 220
AcyI GRCGYC 3 cut(s) 326, 593, 854
AdeI CACNNNGTG 1 cut(s) 286
AfaI GTAC 4 cut(s) 89, 575, 1034, 1058
AfiI CCNNNNNNNGG 1 cut(s) 335
AflII CTTAAG 1 cut(s) 80
AgsI TTSAA 6 cut(s) 25, 109, 130, 192, 946, 1112
AjnI CCWGG 2 cut(s) 47, 623
Alw26I GTCTC 2 cut(s) 110, 1123
AlwI GGATC 1 cut(s) 993
Ama87I CYCGRG 3 cut(s) 113, 353, 1043
Aor13HI TCCGGA 1 cut(s) 1147
AoxI GGCC 5 cut(s) 45, 263, 377, 482, 821
ApeKI GCWGC 4 cut(s) 319, 515, 739, 889
ApoI RAATTY 4 cut(s) 694, 940, 1143, 1168
ArsI GACNNNNNNTTYG 2 cut(s) 109, 141
Asp718I GGTACC 1 cut(s) 1032
AspLEI GCGC 4 cut(s) 328, 400, 560, 1042
AspS9I GGNCC 4 cut(s) 264, 377, 482, 621
AsuC2I CCSGG 2 cut(s) 103, 376
AsuHPI GGTGA 6 cut(s) 454, 463, 625, 743, 971, 1177
AvaI CYCGRG 3 cut(s) 113, 353, 1043
AvaII GGWCC 1 cut(s) 621
BaeI ACNNNNGTAYC 2 cut(s) 285, 318
BanI GGYRCC 2 cut(s) 325, 1032
BanII GRGCYC 1 cut(s) 1001
BbsI GAAGAC 1 cut(s) 1082
BbvCI CCTCAGC 1 cut(s) 509
BbvI GCAGC 4 cut(s) 306, 527, 726, 901
BccI CCATC 1 cut(s) 929
BceAI ACGGC 2 cut(s) 51, 60
BciT130I CCWGG 2 cut(s) 49, 625
BcnI CCSGG 2 cut(s) 103, 376
BcoDI GTCTC 2 cut(s) 110, 1123
BfmI CTRYAG 2 cut(s) 499, 519
BfoI RGCGCY 1 cut(s) 329
BfrI CTTAAG 1 cut(s) 80
BglI GCCNNNNNGGC 3 cut(s) 262, 380, 829
BisI GCNGC 6 cut(s) 320, 350, 516, 609, 740, 890
BlsI GCNGC 6 cut(s) 321, 351, 517, 610, 741, 891
Bme1390I CCNGG 4 cut(s) 49, 103, 376, 625
Bme18I GGWCC 1 cut(s) 621
BmeT110I CYCGRG 3 cut(s) 113, 353, 1043
BmgT120I GGNCC 4 cut(s) 264, 377, 482, 621
BmiI GGNNCC 2 cut(s) 327, 1034
BmrFI CCNGG 4 cut(s) 49, 103, 376, 625
BmsI GCATC 3 cut(s) 283, 883, 1072
BpiI GAAGAC 1 cut(s) 1082
BpmI CTGGAG 1 cut(s) 1037
Bpu10I CCTNAGC 2 cut(s) 92, 509
BpuEI CTTGAG 2 cut(s) 703, 794
BpuMI CCSGG 2 cut(s) 103, 376
BsaHI GRCGYC 3 cut(s) 326, 593, 854
BsaI GGTCTC 2 cut(s) 110, 1123
BsaJI CCNNGG 2 cut(s) 314, 485
BsaWI WCCGGW 1 cut(s) 1147
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bsc4I CCNNNNNNNGG 1 cut(s) 335
Bse118I RCCGGY 2 cut(s) 322, 379
Bse1I ACTGG 2 cut(s) 922, 1054
Bse3DI GCAATG 1 cut(s) 269
BseAI TCCGGA 1 cut(s) 1147
BseBI CCWGG 2 cut(s) 49, 625
BseDI CCNNGG 2 cut(s) 314, 485
BseGI GGATG 2 cut(s) 274, 940
BseLI CCNNNNNNNGG 1 cut(s) 335
BseMI GCAATG 1 cut(s) 269
BseMII CTCAG 6 cut(s) 83, 198, 500, 639, 651, 1062
BseNI ACTGG 2 cut(s) 922, 1054
BseRI GAGGAG 3 cut(s) 460, 815, 1141
BseXI GCAGC 4 cut(s) 306, 527, 726, 901
BseYI CCCAGC 1 cut(s) 358
BshFI GGCC 5 cut(s) 47, 265, 379, 484, 823
BshNI GGYRCC 2 cut(s) 325, 1032
BsiHKCI CYCGRG 3 cut(s) 113, 353, 1043
BsiSI CCGG 6 cut(s) 102, 323, 329, 375, 380, 1148
BslFI GGGAC 3 cut(s) 351, 580, 613
BslI CCNNNNNNNGG 1 cut(s) 335
BsmAI GTCTC 2 cut(s) 110, 1123
BsmFI GGGAC 3 cut(s) 351, 580, 613
BsmI GAATGC 1 cut(s) 628
BsnI GGCC 5 cut(s) 47, 265, 379, 484, 823
Bso31I GGTCTC 2 cut(s) 110, 1123
BsoBI CYCGRG 3 cut(s) 113, 353, 1043
Bsp1286I GDGCHC 1 cut(s) 1001
Bsp13I TCCGGA 1 cut(s) 1147
Bsp1407I TGTACA 1 cut(s) 573
Bsp143I GATC 3 cut(s) 39, 142, 985
BspACI CCGC 4 cut(s) 30, 349, 608, 611
BspANI GGCC 5 cut(s) 47, 265, 379, 484, 823
BspCNI CTCAG 6 cut(s) 84, 199, 501, 640, 652, 1063
BspEI TCCGGA 1 cut(s) 1147
BspHI TCATGA 3 cut(s) 214, 634, 988
BspLI GGNNCC 2 cut(s) 327, 1034
BspPI GGATC 1 cut(s) 993
BspQI GCTCTTC 1 cut(s) 20
BspT107I GGYRCC 2 cut(s) 325, 1032
BspTI CTTAAG 1 cut(s) 80
BspTNI GGTCTC 2 cut(s) 110, 1123
BsrBI CCGCTC 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 269
BsrFI RCCGGY 2 cut(s) 322, 379
BsrGI TGTACA 1 cut(s) 573
BsrI ACTGG 2 cut(s) 922, 1054
BssAI RCCGGY 2 cut(s) 322, 379
BssECI CCNNGG 2 cut(s) 314, 485
BssMI GATC 3 cut(s) 39, 142, 985
BssNI GRCGYC 3 cut(s) 326, 593, 854
BssT1I CCWWGG 1 cut(s) 314
Bst2UI CCWGG 2 cut(s) 49, 625
Bst4CI ACNGT 1 cut(s) 571
Bst6I CTCTTC 3 cut(s) 20, 449, 611
BstACI GRCGYC 3 cut(s) 326, 593, 854
BstAFI CTTAAG 1 cut(s) 80
BstAUI TGTACA 1 cut(s) 573
BstC8I GCNNGC 3 cut(s) 324, 381, 679
BstDEI CTNAG 6 cut(s) 92, 207, 509, 648, 660, 1071
BstF5I GGATG 2 cut(s) 274, 940
BstH2I RGCGCY 1 cut(s) 329
BstHHI GCGC 4 cut(s) 328, 400, 560, 1042
BstKTI GATC 3 cut(s) 42, 145, 988
BstMAI GTCTC 2 cut(s) 110, 1123
BstMBI GATC 3 cut(s) 39, 142, 985
BstMWI GCNNNNNNNGC 7 cut(s) 44, 262, 271, 325, 355, 380, 829
BstNI CCWGG 2 cut(s) 49, 625
BstSCI CCNGG 4 cut(s) 47, 101, 374, 623
BstSFI CTRYAG 2 cut(s) 499, 519
BstV1I GCAGC 4 cut(s) 306, 527, 726, 901
BstV2I GAAGAC 1 cut(s) 1082
BsuRI GGCC 5 cut(s) 47, 265, 379, 484, 823
BtsCI GGATG 2 cut(s) 274, 940
BtsIMutI CAGTG 1 cut(s) 204
Cac8I GCNNGC 3 cut(s) 324, 381, 679
CciI TCATGA 3 cut(s) 214, 634, 988
CfoI GCGC 4 cut(s) 328, 400, 560, 1042
Cfr10I RCCGGY 2 cut(s) 322, 379
Cfr13I GGNCC 4 cut(s) 264, 377, 482, 621
CseI GACGC 2 cut(s) 582, 843
Csp6I GTAC 4 cut(s) 88, 574, 1033, 1057
CviAII CATG 7 cut(s) 215, 533, 554, 635, 757, 982, 989
CviQI GTAC 4 cut(s) 88, 574, 1033, 1057
DdeI CTNAG 6 cut(s) 92, 207, 509, 648, 660, 1071
DinI GGCGCC 1 cut(s) 327
DpnI GATC 3 cut(s) 41, 144, 987
DpnII GATC 3 cut(s) 39, 142, 985
DraI TTTAAA 1 cut(s) 463
DraIII CACNNNGTG 1 cut(s) 286
Eam1104I CTCTTC 3 cut(s) 20, 449, 611
EarI CTCTTC 3 cut(s) 20, 449, 611
Eco130I CCWWGG 1 cut(s) 314
Eco24I GRGCYC 1 cut(s) 1001
Eco31I GGTCTC 2 cut(s) 110, 1123
Eco47I GGWCC 1 cut(s) 621
Eco57I CTGAAG 3 cut(s) 179, 216, 220
Eco88I CYCGRG 3 cut(s) 113, 353, 1043
EcoRI GAATTC 1 cut(s) 1143
EcoRII CCWGG 2 cut(s) 47, 623
EcoT14I CCWWGG 1 cut(s) 314
EcoT22I ATGCAT 1 cut(s) 876
EcoT38I GRGCYC 1 cut(s) 1001
EgeI GGCGCC 1 cut(s) 327
EheI GGCGCC 1 cut(s) 327
ErhI CCWWGG 1 cut(s) 314
FaeI CATG 7 cut(s) 218, 536, 557, 638, 760, 985, 992
FalI AAGNNNNNCTT 2 cut(s) 63, 95
FaqI GGGAC 3 cut(s) 351, 580, 613
FatI CATG 7 cut(s) 214, 532, 553, 634, 756, 981, 988
Fnu4HI GCNGC 6 cut(s) 320, 350, 516, 609, 740, 890
FokI GGATG 2 cut(s) 261, 947
FriOI GRGCYC 1 cut(s) 1001
Fsp4HI GCNGC 6 cut(s) 320, 350, 516, 609, 740, 890
GlaI GCGC 4 cut(s) 327, 399, 559, 1041
GluI GCNGC 6 cut(s) 320, 350, 516, 609, 740, 890
GsaI CCCAGC 1 cut(s) 362
GsuI CTGGAG 1 cut(s) 1037
HaeII RGCGCY 1 cut(s) 329
HaeIII GGCC 5 cut(s) 47, 265, 379, 484, 823
HapII CCGG 6 cut(s) 102, 323, 329, 375, 380, 1148
HgaI GACGC 2 cut(s) 582, 843
HhaI GCGC 4 cut(s) 328, 400, 560, 1042
Hin1I GRCGYC 3 cut(s) 326, 593, 854
Hin1II CATG 7 cut(s) 218, 536, 557, 638, 760, 985, 992
Hin6I GCGC 4 cut(s) 326, 398, 558, 1040
HinP1I GCGC 4 cut(s) 326, 398, 558, 1040
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HindIII AAGCTT 1 cut(s) 953
HinfI GANTC 1 cut(s) 898
HpaII CCGG 6 cut(s) 102, 323, 329, 375, 380, 1148
HphI GGTGA 6 cut(s) 454, 463, 625, 743, 971, 1177
Hpy166II GTNNAC 3 cut(s) 19, 88, 574
Hpy188I TCNGA 2 cut(s) 159, 292
Hpy188III TCNNGA 7 cut(s) 215, 238, 635, 773, 878, 989, 1148
Hpy8I GTNNAC 3 cut(s) 19, 88, 574
Hpy99I CGWCG 1 cut(s) 598
HpyAV CCTTC 4 cut(s) 154, 191, 328, 632
HpyCH4III ACNGT 1 cut(s) 571
HpyCH4IV ACGT 2 cut(s) 132, 866
HpyCH4V TGCA 5 cut(s) 274, 703, 709, 874, 950
HpyF10VI GCNNNNNNNGC 7 cut(s) 44, 262, 271, 325, 355, 380, 829
HpyF3I CTNAG 6 cut(s) 92, 207, 509, 648, 660, 1071
HpySE526I ACGT 2 cut(s) 132, 866
Hsp92I GRCGYC 3 cut(s) 326, 593, 854
Hsp92II CATG 7 cut(s) 218, 536, 557, 638, 760, 985, 992
HspAI GCGC 4 cut(s) 326, 398, 558, 1040
KasI GGCGCC 1 cut(s) 325
Kpn2I TCCGGA 1 cut(s) 1147
KpnI GGTACC 1 cut(s) 1036
KroI GCCGGC 2 cut(s) 322, 379
KroNI GCCGGC 2 cut(s) 324, 381
Kzo9I GATC 3 cut(s) 39, 142, 985
LguI GCTCTTC 1 cut(s) 20
LmnI GCTCC 1 cut(s) 231
Lsp1109I GCAGC 4 cut(s) 306, 527, 726, 901
LweI GCATC 3 cut(s) 283, 883, 1072
MaeII ACGT 2 cut(s) 132, 866
MaeIII GTNAC 2 cut(s) 806, 1154
MalI GATC 3 cut(s) 41, 144, 987
MbiI CCGCTC 1 cut(s) 30
MboI GATC 3 cut(s) 39, 142, 985
MboII GAAGA 4 cut(s) 37, 466, 628, 1087
MfeI CAATTG 1 cut(s) 1134
MhlI GDGCHC 1 cut(s) 1001
MluCI AATT 7 cut(s) 226, 694, 940, 1112, 1134, 1143, 1168
Mly113I GGCGCC 1 cut(s) 326
MmeI TCCRAC 1 cut(s) 795
Mph1103I ATGCAT 1 cut(s) 876
MroI TCCGGA 1 cut(s) 1147
MroNI GCCGGC 2 cut(s) 322, 379
MseI TTAA 3 cut(s) 81, 462, 912
MslI CAYNNNNRTG 1 cut(s) 633
MspA1I CMGCKG 1 cut(s) 1019
MspCI CTTAAG 1 cut(s) 80
MspI CCGG 6 cut(s) 102, 323, 329, 375, 380, 1148
MspR9I CCNGG 4 cut(s) 49, 103, 376, 625
MunI CAATTG 1 cut(s) 1134
Mva1269I GAATGC 1 cut(s) 628
MvaI CCWGG 2 cut(s) 49, 625
MwoI GCNNNNNNNGC 7 cut(s) 44, 262, 271, 325, 355, 380, 829
NaeI GCCGGC 2 cut(s) 324, 381
NarI GGCGCC 1 cut(s) 326
NciI CCSGG 2 cut(s) 103, 376
NdeII GATC 3 cut(s) 39, 142, 985
NgoMIV GCCGGC 2 cut(s) 322, 379
NlaIII CATG 7 cut(s) 218, 536, 557, 638, 760, 985, 992
NlaIV GGNNCC 2 cut(s) 327, 1034
NmeAIII GCCGAG 1 cut(s) 510
NmuCI GTSAC 1 cut(s) 1154
NsiI ATGCAT 1 cut(s) 876
PagI TCATGA 3 cut(s) 214, 634, 988
PciSI GCTCTTC 1 cut(s) 20
PctI GAATGC 1 cut(s) 628
PdiI GCCGGC 2 cut(s) 324, 381
PfeI GAWTC 1 cut(s) 898
PkrI GCNGC 6 cut(s) 321, 351, 517, 610, 741, 891
PluTI GGCGCC 1 cut(s) 329
Psp6I CCWGG 2 cut(s) 47, 623
PspFI CCCAGC 1 cut(s) 358
PspGI CCWGG 2 cut(s) 47, 623
PspN4I GGNNCC 2 cut(s) 327, 1034
PspPI GGNCC 4 cut(s) 264, 377, 482, 621
PsrI GAACNNNNNNTAC 2 cut(s) 164, 196
PvuII CAGCTG 1 cut(s) 1019
RsaI GTAC 4 cut(s) 89, 575, 1034, 1058
RsaNI GTAC 4 cut(s) 88, 574, 1033, 1057
RseI CAYNNNNRTG 1 cut(s) 633
SapI GCTCTTC 1 cut(s) 20
SaqAI TTAA 3 cut(s) 81, 462, 912
SatI GCNGC 6 cut(s) 320, 350, 516, 609, 740, 890
Sau3AI GATC 3 cut(s) 39, 142, 985
Sau96I GGNCC 4 cut(s) 264, 377, 482, 621
ScrFI CCNGG 4 cut(s) 49, 103, 376, 625
SduI GDGCHC 1 cut(s) 1001
SfaNI GCATC 3 cut(s) 283, 883, 1072
SfcI CTRYAG 2 cut(s) 499, 519
SfoI GGCGCC 1 cut(s) 327
SinI GGWCC 1 cut(s) 621
SmiMI CAYNNNNRTG 1 cut(s) 633
SmlI CTYRAG 3 cut(s) 80, 682, 773
SmoI CTYRAG 3 cut(s) 80, 682, 773
Sse9I AATT 7 cut(s) 226, 694, 940, 1112, 1134, 1143, 1168
SsiI CCGC 4 cut(s) 30, 349, 608, 611
SspDI GGCGCC 1 cut(s) 325
StyD4I CCNGG 4 cut(s) 47, 101, 374, 623
StyI CCWWGG 1 cut(s) 314
TaaI ACNGT 1 cut(s) 571
TaiI ACGT 2 cut(s) 135, 869
TaqI TCGA 1 cut(s) 1007
TasI AATT 7 cut(s) 226, 694, 940, 1112, 1134, 1143, 1168
TatI WGTACW 1 cut(s) 573
TauI GCSGC 2 cut(s) 352, 611
TfiI GAWTC 1 cut(s) 898
Tru1I TTAA 3 cut(s) 81, 462, 912
Tru9I TTAA 3 cut(s) 81, 462, 912
TscAI CASTG 1 cut(s) 211
TseFI GTSAC 1 cut(s) 1154
TseI GCWGC 4 cut(s) 319, 515, 739, 889
Tsp45I GTSAC 1 cut(s) 1154
TspDTI ATGAA 5 cut(s) 203, 521, 651, 745, 890
TspRI CASTG 1 cut(s) 211
Vha464I CTTAAG 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 621
XapI RAATTY 4 cut(s) 694, 940, 1143, 1168
Zsp2I ATGCAT 1 cut(s) 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.