Rh5CG550600

Lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0005408
Physical Location & Seq
Reverse (-)
76708970 .. 76710985
2016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG550600.1

Sequence Viewer

Length: 1443 bp
ATGAACCCAAGAAAGCTTCTTGCTTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCGCCGCTTCTCCTCCGCCTCCGCCGAGAACCTCAGCTTCGACTTCCCCTCCTTCAACTTCCGCAACCTCACCTTCCTCGGCTCCTCCCACATCCGCAACGGCGTCGTCGGCCTCACCCGCGACCTCCCCGTCCCCACCTCCTCCGCCGGCTCCGTCCTCTACAACTCCCCCGTCCGCTTCTTCGACCCCAACTCCAACACCACCGCCTCCTTCTCCACCCGCTTCACCTTCTCCTTCTCCAACCTCAACCCCTCCTCCTCCGGCGACGGCATGTCGTTTTTCCTCTCCCCCAACAACCAGACCCTCGGCAGCTCCGGCGCCTACCTGGGTCTCCTCAACTCCTCCCTCCCCACCCACAACCACTTCATCGCCGTCGAATTCGACACCCGCCAAGATACCCACTTTTCCGACCCGAACGACAACCACGTCGGTCTCGACATCGACACCTTGATCTCCATCAAGACCGCCGACCCCATTGACCAAGATGTTGACTTGAAGAGCGGAACGGCGATCACGGCCTGGATTGACTACAAGAACGACCAAGAAACGCTTCTGGTGTACCTGAGCTACTCCGCGTTCAAACCCGAGACCCCTGTTTTGAACGTGGGGATTGATCTTTCTGGGTATCTGAAGGAGGTTATGTATGTGGGGTTCTCTGCTTCAACTGAAGGAAGCACTGAGCTTCATGAGATTGAGAATTGGAGCTTCAGGACATCTGGGTTTGTGCCGAAAAGGCCCACATTGCATCCTCACAATGTGTCTGATACTTATGTGATTGTCAGTCCAAGGCTGCCGGCGCCGGAGAAGGGACACAAGAGGCGGCTGGGGCTGGGGCTTGGGATTGCCGGGCCGGCCTTCTTTTGTGTTGCGCTGGTGGTTTTCGGGTATGTGAGTGTGAGGAAGTGGAGGGAGGTGAGGAGGGTGAAGAGCTTTAAAGCAGAGGTGGTGGCAGGGCCGAGGCAGTTTAGCTACAGAGAGCTGAGGGCGGCTACAGGAGGGTTTCATGGGAGTAGGATTATTGGGCATGGTGCATTTGGGACTGTGTACAAGGCGTTTTTCGTGGCGTCGGGGACTATTGCGGCGGTGAAGAGGTCCAGGCATTCTCATGAAGGTAAGACTGAGTTTCTTGCTGAGTTGTCTATTATAGCTTGCTTGAGGCACAAGAATTTAGTGCATTTGCAAGGGTGGTGTGTTGAGAAAGATAGCTCCAAGAGGCCTACAATGAGGAGAGTTCTACAGATCTTGAGTAATGAGGCAGAACCTCCAGCTGTGCCGAGGGTTAAGCCAAGTCTCAGTTTCTCTTGTGGCGTGTCTTTGTCTGTTGATGACATTGTTTCAGATTGTGATGGCAGCCTCACAAGCTCAATGTGCGAGATTGTTGTCAACTGA

Protein Analysis

480

Amino Acids

53.04

Weight (kDa)

8.79

Isoelectric Point (pI)

41.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 29 - 262 8.5e-66 Legume lectin domain
Lectin_L-type_dom PF18483 49 - 250 1.9e-12 Legume lectin beta-barrel domain
Pkinase PF00069 353 - 420 9.8e-10 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 356 - 419 3.6e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 182, 479
AccB1I GGYRCC 2 cut(s) 371, 850
AccBSI CCGCTC 1 cut(s) 555
AccII CGCG 2 cut(s) 174, 629
AcsI RAATTY 2 cut(s) 431, 1219
AcuI CTGAAG 3 cut(s) 704, 741, 745
AcyI GRCGYC 4 cut(s) 156, 372, 851, 1118
AdeI CACNNNGTG 1 cut(s) 811
AfaI GTAC 2 cut(s) 614, 1100
AfiI CCNNNNNNNGG 1 cut(s) 860
AgsI TTSAA 5 cut(s) 109, 550, 634, 655, 717
AhdI GACNNNNNGTC 1 cut(s) 325
AjiI CACGTC 1 cut(s) 481
AjnI CCWGG 3 cut(s) 378, 572, 1148
AjuI GAANNNNNNNTTGG 2 cut(s) 588, 620
Alw26I GTCTC 4 cut(s) 389, 491, 635, 1349
Ama87I CYCGRG 1 cut(s) 638
AoxI GGCC 7 cut(s) 163, 570, 788, 902, 906, 1007, 1268
ApeKI GCWGC 3 cut(s) 363, 844, 1404
ApoI RAATTY 2 cut(s) 431, 1219
ArsI GACNNNNNNTTYG 2 cut(s) 634, 666
Asp700I GAANNNNTTC 1 cut(s) 603
AspLEI GCGC 3 cut(s) 374, 853, 925
AspS9I GGNCC 4 cut(s) 789, 902, 1007, 1146
AsuC2I CCSGG 1 cut(s) 901
AsuHPI GGTGA 6 cut(s) 115, 160, 271, 979, 988, 1150
AvaI CYCGRG 1 cut(s) 638
AvaII GGWCC 1 cut(s) 1146
BaeI ACNNNNGTAYC 2 cut(s) 810, 843
BanI GGYRCC 2 cut(s) 371, 850
BbvCI CCTCAGC 2 cut(s) 86, 1034
BbvI GCAGC 3 cut(s) 375, 831, 1416
BccI CCATC 2 cut(s) 518, 1394
BceAI ACGGC 5 cut(s) 169, 337, 410, 576, 585
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BciT130I CCWGG 3 cut(s) 380, 574, 1150
BcnI CCSGG 1 cut(s) 901
BcoDI GTCTC 4 cut(s) 389, 491, 635, 1349
BfmI CTRYAG 3 cut(s) 1024, 1044, 1289
BfoI RGCGCY 2 cut(s) 375, 854
BglI GCCNNNNNGGC 2 cut(s) 787, 905
BglII AGATCT 1 cut(s) 1293
BisI GCNGC 7 cut(s) 58, 364, 845, 875, 1041, 1134, 1405
BlsI GCNGC 7 cut(s) 59, 365, 846, 876, 1042, 1135, 1406
Bme1390I CCNGG 4 cut(s) 380, 574, 901, 1150
Bme18I GGWCC 1 cut(s) 1146
BmeRI GACNNNNNGTC 1 cut(s) 325
BmeT110I CYCGRG 1 cut(s) 638
BmgBI CACGTC 1 cut(s) 481
BmgT120I GGNCC 4 cut(s) 789, 902, 1007, 1146
BmiI GGNNCC 4 cut(s) 136, 205, 373, 852
BmrFI CCNGG 4 cut(s) 380, 574, 901, 1150
BmsI GCATC 1 cut(s) 808
BpmI CTGGAG 1 cut(s) 1302
Bpu10I CCTNAGC 3 cut(s) 86, 617, 1034
BpuEI CTTGAG 2 cut(s) 1228, 1318
BpuMI CCSGG 1 cut(s) 901
BsaBI GATNNNNATC 1 cut(s) 509
BsaHI GRCGYC 4 cut(s) 156, 372, 851, 1118
BsaI GGTCTC 3 cut(s) 389, 491, 635
BsaJI CCNNGG 6 cut(s) 130, 358, 379, 839, 1010, 1328
BsaXI ACNNNNNCTCC 8 cut(s) 86, 116, 230, 260, 293, 323, 680, 710
Bsc4I CCNNNNNNNGG 1 cut(s) 860
Bse118I RCCGGY 3 cut(s) 200, 847, 904
Bse3DI GCAATG 1 cut(s) 794
Bse8I GATNNNNATC 1 cut(s) 509
BseBI CCWGG 3 cut(s) 380, 574, 1150
BseDI CCNNGG 6 cut(s) 130, 358, 379, 839, 1010, 1328
BseGI GGATG 2 cut(s) 144, 799
BseJI GATNNNNATC 1 cut(s) 509
BseLI CCNNNNNNNGG 1 cut(s) 860
BseMI GCAATG 1 cut(s) 794
BseMII CTCAG 7 cut(s) 100, 608, 723, 1025, 1164, 1176, 1360
BseRI GAGGAG 9 cut(s) 55, 127, 184, 298, 301, 377, 385, 985, 1294
BseXI GCAGC 3 cut(s) 375, 831, 1416
BseYI CCCAGC 2 cut(s) 877, 883
Bsh1236I CGCG 2 cut(s) 174, 629
BshFI GGCC 7 cut(s) 165, 572, 790, 904, 908, 1009, 1270
BshNI GGYRCC 2 cut(s) 371, 850
BsiHKCI CYCGRG 1 cut(s) 638
BsiSI CCGG 7 cut(s) 201, 315, 369, 848, 854, 900, 905
BslFI GGGAC 4 cut(s) 170, 876, 1105, 1138
BslI CCNNNNNNNGG 1 cut(s) 860
BsmAI GTCTC 4 cut(s) 389, 491, 635, 1349
BsmFI GGGAC 4 cut(s) 170, 876, 1105, 1138
BsmI GAATGC 1 cut(s) 1153
BsnI GGCC 7 cut(s) 165, 572, 790, 904, 908, 1009, 1270
Bso31I GGTCTC 3 cut(s) 389, 491, 635
BsoBI CYCGRG 1 cut(s) 638
Bsp1407I TGTACA 1 cut(s) 1098
Bsp143I GATC 4 cut(s) 504, 564, 667, 1293
BspANI GGCC 7 cut(s) 165, 572, 790, 904, 908, 1009, 1270
BspCNI CTCAG 7 cut(s) 99, 609, 724, 1026, 1165, 1177, 1359
BspFNI CGCG 2 cut(s) 174, 629
BspHI TCATGA 2 cut(s) 739, 1159
BspLI GGNNCC 4 cut(s) 136, 205, 373, 852
BspQI GCTCTTC 2 cut(s) 545, 974
BspT107I GGYRCC 2 cut(s) 371, 850
BspTNI GGTCTC 3 cut(s) 389, 491, 635
BsrBI CCGCTC 1 cut(s) 555
BsrDI GCAATG 1 cut(s) 794
BsrFI RCCGGY 3 cut(s) 200, 847, 904
BsrGI TGTACA 1 cut(s) 1098
BssAI RCCGGY 3 cut(s) 200, 847, 904
BssECI CCNNGG 6 cut(s) 130, 358, 379, 839, 1010, 1328
BssMI GATC 4 cut(s) 504, 564, 667, 1293
BssNI GRCGYC 4 cut(s) 156, 372, 851, 1118
BssT1I CCWWGG 1 cut(s) 839
Bst2UI CCWGG 3 cut(s) 380, 574, 1150
Bst4CI ACNGT 1 cut(s) 1096
Bst6I CTCTTC 3 cut(s) 545, 974, 1136
BstACI GRCGYC 4 cut(s) 156, 372, 851, 1118
BstAUI TGTACA 1 cut(s) 1098
BstC8I GCNNGC 4 cut(s) 202, 849, 906, 1204
BstDEI CTNAG 7 cut(s) 86, 617, 732, 1034, 1173, 1185, 1346
BstF5I GGATG 2 cut(s) 144, 799
BstFNI CGCG 2 cut(s) 174, 629
BstH2I RGCGCY 2 cut(s) 375, 854
BstHHI GCGC 3 cut(s) 374, 853, 925
BstKTI GATC 4 cut(s) 507, 567, 670, 1296
BstMAI GTCTC 4 cut(s) 389, 491, 635, 1349
BstMBI GATC 4 cut(s) 504, 564, 667, 1293
BstNI CCWGG 3 cut(s) 380, 574, 1150
BstNSI RCATGY 1 cut(s) 328
BstSCI CCNGG 4 cut(s) 378, 572, 899, 1148
BstSFI CTRYAG 3 cut(s) 1024, 1044, 1289
BstUI CGCG 2 cut(s) 174, 629
BstV1I GCAGC 3 cut(s) 375, 831, 1416
BstX2I RGATCY 1 cut(s) 1293
BstYI RGATCY 1 cut(s) 1293
BsuRI GGCC 7 cut(s) 165, 572, 790, 904, 908, 1009, 1270
BtgZI GCGATG 1 cut(s) 406
BtrI CACGTC 1 cut(s) 481
BtsCI GGATG 2 cut(s) 144, 799
BtsIMutI CAGTG 1 cut(s) 729
Cac8I GCNNGC 4 cut(s) 202, 849, 906, 1204
CciI TCATGA 2 cut(s) 739, 1159
CfoI GCGC 3 cut(s) 374, 853, 925
Cfr10I RCCGGY 3 cut(s) 200, 847, 904
Cfr13I GGNCC 4 cut(s) 789, 902, 1007, 1146
CseI GACGC 2 cut(s) 145, 1107
Csp6I GTAC 2 cut(s) 613, 1099
CviAII CATG 5 cut(s) 325, 740, 1058, 1079, 1160
CviQI GTAC 2 cut(s) 613, 1099
DdeI CTNAG 7 cut(s) 86, 617, 732, 1034, 1173, 1185, 1346
DinI GGCGCC 2 cut(s) 373, 852
DpnI GATC 4 cut(s) 506, 566, 669, 1295
DpnII GATC 4 cut(s) 504, 564, 667, 1293
DraI TTTAAA 1 cut(s) 988
DraIII CACNNNGTG 1 cut(s) 811
DrdI GACNNNNNNGTC 2 cut(s) 182, 479
DriI GACNNNNNGTC 1 cut(s) 325
DseDI GACNNNNNNGTC 2 cut(s) 182, 479
Eam1104I CTCTTC 3 cut(s) 545, 974, 1136
Eam1105I GACNNNNNGTC 1 cut(s) 325
EarI CTCTTC 3 cut(s) 545, 974, 1136
EciI GGCGGA 4 cut(s) 44, 58, 64, 187
Eco130I CCWWGG 1 cut(s) 839
Eco147I AGGCCT 1 cut(s) 1270
Eco31I GGTCTC 3 cut(s) 389, 491, 635
Eco47I GGWCC 1 cut(s) 1146
Eco57I CTGAAG 3 cut(s) 704, 741, 745
Eco88I CYCGRG 1 cut(s) 638
EcoRI GAATTC 1 cut(s) 431
EcoRII CCWGG 3 cut(s) 378, 572, 1148
EcoT14I CCWWGG 1 cut(s) 839
EgeI GGCGCC 2 cut(s) 373, 852
EheI GGCGCC 2 cut(s) 373, 852
ErhI CCWWGG 1 cut(s) 839
FaeI CATG 5 cut(s) 328, 743, 1061, 1082, 1163
FalI AAGNNNNNCTT 2 cut(s) 588, 620
FaqI GGGAC 4 cut(s) 170, 876, 1105, 1138
FatI CATG 5 cut(s) 324, 739, 1057, 1078, 1159
FauI CCCGC 3 cut(s) 179, 281, 449
Fnu4HI GCNGC 7 cut(s) 58, 364, 845, 875, 1041, 1134, 1405
FokI GGATG 2 cut(s) 131, 786
FseI GGCCGGCC 1 cut(s) 908
Fsp4HI GCNGC 7 cut(s) 58, 364, 845, 875, 1041, 1134, 1405
GlaI GCGC 3 cut(s) 373, 852, 924
GluI GCNGC 7 cut(s) 58, 364, 845, 875, 1041, 1134, 1405
GsaI CCCAGC 2 cut(s) 881, 887
GsuI CTGGAG 1 cut(s) 1302
HaeII RGCGCY 2 cut(s) 375, 854
HaeIII GGCC 7 cut(s) 165, 572, 790, 904, 908, 1009, 1270
HapII CCGG 7 cut(s) 201, 315, 369, 848, 854, 900, 905
HgaI GACGC 2 cut(s) 145, 1107
HhaI GCGC 3 cut(s) 374, 853, 925
Hin1I GRCGYC 4 cut(s) 156, 372, 851, 1118
Hin1II CATG 5 cut(s) 328, 743, 1061, 1082, 1163
Hin6I GCGC 3 cut(s) 372, 851, 923
HinP1I GCGC 3 cut(s) 372, 851, 923
HincII GTYRAC 2 cut(s) 544, 1438
HindII GTYRAC 2 cut(s) 544, 1438
HindIII AAGCTT 1 cut(s) 14
HpaII CCGG 7 cut(s) 201, 315, 369, 848, 854, 900, 905
HphI GGTGA 6 cut(s) 115, 160, 271, 979, 988, 1150
Hpy166II GTNNAC 4 cut(s) 544, 613, 1099, 1438
Hpy188I TCNGA 4 cut(s) 463, 684, 817, 1393
Hpy188III TCNNGA 6 cut(s) 488, 514, 740, 763, 1160, 1297
Hpy8I GTNNAC 4 cut(s) 544, 613, 1099, 1438
Hpy99I CGWCG 6 cut(s) 161, 164, 323, 431, 485, 1123
HpyCH4III ACNGT 1 cut(s) 1096
HpyCH4IV ACGT 2 cut(s) 480, 657
HpyCH4V TGCA 4 cut(s) 799, 1085, 1228, 1234
HpyF3I CTNAG 7 cut(s) 86, 617, 732, 1034, 1173, 1185, 1346
HpySE526I ACGT 2 cut(s) 480, 657
Hsp92I GRCGYC 4 cut(s) 156, 372, 851, 1118
Hsp92II CATG 5 cut(s) 328, 743, 1061, 1082, 1163
HspAI GCGC 3 cut(s) 372, 851, 923
KasI GGCGCC 2 cut(s) 371, 850
KroI GCCGGC 3 cut(s) 200, 847, 904
KroNI GCCGGC 3 cut(s) 202, 849, 906
Kzo9I GATC 4 cut(s) 504, 564, 667, 1293
LguI GCTCTTC 2 cut(s) 545, 974
LmnI GCTCC 5 cut(s) 140, 209, 371, 756, 1265
Lsp1109I GCAGC 3 cut(s) 375, 831, 1416
LweI GCATC 1 cut(s) 808
MaeII ACGT 2 cut(s) 480, 657
MalI GATC 4 cut(s) 506, 566, 669, 1295
MbiI CCGCTC 1 cut(s) 555
MboI GATC 4 cut(s) 504, 564, 667, 1293
MflI RGATCY 1 cut(s) 1293
MluCI AATT 3 cut(s) 431, 751, 1219
Mly113I GGCGCC 2 cut(s) 372, 851
MmeI TCCRAC 3 cut(s) 273, 318, 486
MroNI GCCGGC 3 cut(s) 200, 847, 904
MroXI GAANNNNTTC 1 cut(s) 603
MseI TTAA 2 cut(s) 987, 1335
MslI CAYNNNNRTG 1 cut(s) 1158
MspA1I CMGCKG 1 cut(s) 1322
MspI CCGG 7 cut(s) 201, 315, 369, 848, 854, 900, 905
MspR9I CCNGG 4 cut(s) 380, 574, 901, 1150
Mva1269I GAATGC 1 cut(s) 1153
MvaI CCWGG 3 cut(s) 380, 574, 1150
MvnI CGCG 2 cut(s) 174, 629
NaeI GCCGGC 3 cut(s) 202, 849, 906
NarI GGCGCC 2 cut(s) 372, 851
NciI CCSGG 1 cut(s) 901
NdeII GATC 4 cut(s) 504, 564, 667, 1293
NgoMIV GCCGGC 3 cut(s) 200, 847, 904
NlaIII CATG 5 cut(s) 328, 743, 1061, 1082, 1163
NlaIV GGNNCC 4 cut(s) 136, 205, 373, 852
NmeAIII GCCGAG 5 cut(s) 103, 111, 339, 1035, 1353
NspI RCATGY 1 cut(s) 328
PagI TCATGA 2 cut(s) 739, 1159
PceI AGGCCT 1 cut(s) 1270
PciSI GCTCTTC 2 cut(s) 545, 974
PcsI WCGNNNNNNNCGW 2 cut(s) 477, 486
PctI GAATGC 1 cut(s) 1153
PdiI GCCGGC 3 cut(s) 202, 849, 906
PdmI GAANNNNTTC 1 cut(s) 603
PkrI GCNGC 7 cut(s) 59, 365, 846, 876, 1042, 1135, 1406
PluTI GGCGCC 2 cut(s) 375, 854
Psp6I CCWGG 3 cut(s) 378, 572, 1148
PspFI CCCAGC 2 cut(s) 877, 883
PspGI CCWGG 3 cut(s) 378, 572, 1148
PspN4I GGNNCC 4 cut(s) 136, 205, 373, 852
PspPI GGNCC 4 cut(s) 789, 902, 1007, 1146
PsrI GAACNNNNNNTAC 2 cut(s) 689, 721
PsuI RGATCY 1 cut(s) 1293
PvuII CAGCTG 1 cut(s) 1322
RigI GGCCGGCC 1 cut(s) 908
RsaI GTAC 2 cut(s) 614, 1100
RsaNI GTAC 2 cut(s) 613, 1099
RseI CAYNNNNRTG 1 cut(s) 1158
SapI GCTCTTC 2 cut(s) 545, 974
SaqAI TTAA 2 cut(s) 987, 1335
SatI GCNGC 7 cut(s) 58, 364, 845, 875, 1041, 1134, 1405
Sau3AI GATC 4 cut(s) 504, 564, 667, 1293
Sau96I GGNCC 4 cut(s) 789, 902, 1007, 1146
ScrFI CCNGG 4 cut(s) 380, 574, 901, 1150
SfaNI GCATC 1 cut(s) 808
SfcI CTRYAG 3 cut(s) 1024, 1044, 1289
SfoI GGCGCC 2 cut(s) 373, 852
SinI GGWCC 1 cut(s) 1146
SmiMI CAYNNNNRTG 1 cut(s) 1158
SmlI CTYRAG 2 cut(s) 1207, 1297
SmoI CTYRAG 2 cut(s) 1207, 1297
Sse9I AATT 3 cut(s) 431, 751, 1219
SseBI AGGCCT 1 cut(s) 1270
SspDI GGCGCC 2 cut(s) 371, 850
StuI AGGCCT 1 cut(s) 1270
StyD4I CCNGG 4 cut(s) 378, 572, 899, 1148
StyI CCWWGG 1 cut(s) 839
TaaI ACNGT 1 cut(s) 1096
TaiI ACGT 2 cut(s) 483, 660
TaqI TCGA 6 cut(s) 93, 237, 429, 435, 489, 495
TaqII GACCGA 1 cut(s) 473
TasI AATT 3 cut(s) 431, 751, 1219
TatI WGTACW 1 cut(s) 1098
TauI GCSGC 4 cut(s) 60, 877, 1043, 1136
Tru1I TTAA 2 cut(s) 987, 1335
Tru9I TTAA 2 cut(s) 987, 1335
TscAI CASTG 1 cut(s) 736
TseI GCWGC 3 cut(s) 363, 844, 1404
TspDTI ATGAA 5 cut(s) 17, 409, 728, 1046, 1176
TspGWI ACGGA 1 cut(s) 196
TspRI CASTG 1 cut(s) 736
VpaK11BI GGWCC 1 cut(s) 1146
XapI RAATTY 2 cut(s) 431, 1219
XceI RCATGY 1 cut(s) 328
XmnI GAANNNNTTC 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.