Rh6AG352200

Legume lectin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0005408
Physical Location & Seq
Forward (+)
55149082 .. 55149354
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG352200.1

Sequence Viewer

Length: 273 bp
ATGTCATTTTTCCTCTCCCCTAACAACCAAACCCTCGGCAGCTCCGGCAACTATCTGGGTCTAGTCAACTCCTCCCAATGGACCCAAAACAAGTTCATCGCCATCGAATTCGATACCCAGCAAGATACCCACTTTGCCGACCCGAACGACAACCATGTGGGTCTTGACATCGATAGCTTGTTCTCGATCAAGACTGCAGACCCGATTGACCAAGAAGTTGACTTGAAGAGCGGCATGGCCATCATGGCATGGATCTACCAGCAACTCCTTTAG

Protein Analysis

90

Amino Acids

10.1

Weight (kDa)

4.07

Isoelectric Point (pI)

32.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 1 - 85 6.3e-22 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 231
AciI CCGC 1 cut(s) 231
AclWI GGATC 1 cut(s) 260
AcoI YGGCCR 1 cut(s) 237
AcsI RAATTY 1 cut(s) 107
AfiI CCNNNNNNNGG 1 cut(s) 78
AgsI TTSAA 1 cut(s) 226
AluBI AGCT 2 cut(s) 42, 177
AluI AGCT 2 cut(s) 42, 177
AlwI GGATC 1 cut(s) 260
AoxI GGCC 1 cut(s) 237
ApeKI GCWGC 1 cut(s) 39
ApoI RAATTY 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 81
AvaII GGWCC 1 cut(s) 81
BalI TGGCCA 1 cut(s) 239
BbvI GCAGC 1 cut(s) 51
BccI CCATC 2 cut(s) 110, 248
BfaI CTAG 1 cut(s) 62
BfmI CTRYAG 1 cut(s) 195
BglI GCCNNNNNGGC 1 cut(s) 245
BisI GCNGC 2 cut(s) 40, 232
BlsI GCNGC 2 cut(s) 41, 233
Bme18I GGWCC 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 1 cut(s) 83
Bsa29I ATCGAT 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 78
BseCI ATCGAT 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 61
BseXI GCAGC 1 cut(s) 51
BseYI CCCAGC 1 cut(s) 117
BshFI GGCC 1 cut(s) 239
BshVI ATCGAT 1 cut(s) 171
BsiSI CCGG 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 78
BsnI GGCC 1 cut(s) 239
Bsp143I GATC 2 cut(s) 186, 252
BspACI CCGC 1 cut(s) 231
BspANI GGCC 1 cut(s) 239
BspDI ATCGAT 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 83
BspMAI CTGCAG 1 cut(s) 199
BspPI GGATC 1 cut(s) 260
BspQI GCTCTTC 1 cut(s) 221
BsrBI CCGCTC 1 cut(s) 231
BssECI CCNNGG 1 cut(s) 34
BssMI GATC 2 cut(s) 186, 252
Bst6I CTCTTC 1 cut(s) 221
BstKTI GATC 2 cut(s) 189, 255
BstMBI GATC 2 cut(s) 186, 252
BstMWI GCNNNNNNNGC 2 cut(s) 45, 245
BstSFI CTRYAG 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 252
BstYI RGATCY 1 cut(s) 252
Bsu15I ATCGAT 1 cut(s) 171
BsuRI GGCC 1 cut(s) 239
BsuTUI ATCGAT 1 cut(s) 171
BtgZI GCGATG 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 81
ClaI ATCGAT 1 cut(s) 171
CviAII CATG 4 cut(s) 155, 235, 244, 249
CviJI RGCY 3 cut(s) 42, 177, 239
CviKI_1 RGCY 3 cut(s) 42, 177, 239
DpnI GATC 2 cut(s) 188, 254
DpnII GATC 2 cut(s) 186, 252
EaeI YGGCCR 1 cut(s) 237
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 81
EcoRI GAATTC 1 cut(s) 107
FaeI CATG 4 cut(s) 158, 238, 247, 252
FaiI YATR 4 cut(s) 156, 236, 245, 250
FatI CATG 4 cut(s) 154, 234, 243, 248
Fnu4HI GCNGC 2 cut(s) 40, 232
Fsp4HI GCNGC 2 cut(s) 40, 232
FspBI CTAG 1 cut(s) 62
GluI GCNGC 2 cut(s) 40, 232
GsaI CCCAGC 1 cut(s) 121
HaeIII GGCC 1 cut(s) 239
HapII CCGG 1 cut(s) 45
Hin1II CATG 4 cut(s) 158, 238, 247, 252
HincII GTYRAC 2 cut(s) 67, 220
HindII GTYRAC 2 cut(s) 67, 220
HpaII CCGG 1 cut(s) 45
Hpy166II GTNNAC 2 cut(s) 67, 220
Hpy188III TCNNGA 3 cut(s) 164, 184, 190
Hpy8I GTNNAC 2 cut(s) 67, 220
HpyCH4V TGCA 1 cut(s) 197
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 245
Hsp92II CATG 4 cut(s) 158, 238, 247, 252
Kzo9I GATC 2 cut(s) 186, 252
LguI GCTCTTC 1 cut(s) 221
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 3 cut(s) 41, 58, 131
Lsp1109I GCAGC 1 cut(s) 51
MaeI CTAG 1 cut(s) 62
MalI GATC 2 cut(s) 188, 254
MbiI CCGCTC 1 cut(s) 231
MboI GATC 2 cut(s) 186, 252
MboII GAAGA 1 cut(s) 238
MflI RGATCY 1 cut(s) 252
MlsI TGGCCA 1 cut(s) 239
MluCI AATT 1 cut(s) 107
MluNI TGGCCA 1 cut(s) 239
MnlI CCTC 3 cut(s) 23, 44, 82
Mox20I TGGCCA 1 cut(s) 239
MscI TGGCCA 1 cut(s) 239
Msp20I TGGCCA 1 cut(s) 239
MspI CCGG 1 cut(s) 45
MwoI GCNNNNNNNGC 2 cut(s) 45, 245
NdeII GATC 2 cut(s) 186, 252
NlaIII CATG 4 cut(s) 158, 238, 247, 252
NlaIV GGNNCC 1 cut(s) 83
NmeAIII GCCGAG 1 cut(s) 15
PciSI GCTCTTC 1 cut(s) 221
PkrI GCNGC 2 cut(s) 41, 233
PspFI CCCAGC 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 83
PspPI GGNCC 1 cut(s) 81
PstI CTGCAG 1 cut(s) 199
PsuI RGATCY 1 cut(s) 252
SapI GCTCTTC 1 cut(s) 221
SatI GCNGC 2 cut(s) 40, 232
Sau3AI GATC 2 cut(s) 186, 252
Sau96I GGNCC 1 cut(s) 81
SetI ASST 2 cut(s) 44, 179
SfcI CTRYAG 1 cut(s) 195
SinI GGWCC 1 cut(s) 81
Sse9I AATT 1 cut(s) 107
SsiI CCGC 1 cut(s) 231
SspMI CTAG 1 cut(s) 62
TaqI TCGA 4 cut(s) 105, 111, 171, 185
TasI AATT 1 cut(s) 107
TauI GCSGC 1 cut(s) 234
TseI GCWGC 1 cut(s) 39
TspDTI ATGAA 1 cut(s) 85
VpaK11BI GGWCC 1 cut(s) 81
XapI RAATTY 1 cut(s) 107
XspI CTAG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.