Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005408

Physical Location & Seq

Genomic Coordinates Forward (+)

2048140 .. 2049882

Gene Structure 1743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g02420.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGGGACCATGCATGTTTAGGATTTGTTTAGGATTTGATTTGGGGTTTCTTGGGTTAGCCAATTTTGAGTCAAGGTTAACGTGTTTTTGTACAAAACTAATTAAGAAAACACTCTACTTACATTATATTATCAAATTATCGAATTTGATACTAAATAATTATACAGAATTATACTTTACCAAAGCTTTCTTCAATGATAAACTAGTAAACCTCACACACTATCAAAAAAAGTTTGCATTCGTGAATAAACTTGGCATACGGGTCTTGTTTGTGTCATCCTGTTATATCTTAATGGGTCTTGTTGTGTCAGATCATTATCTTAACGTGTTCTTAACAGGCAAGAAATTGTTATATCTAATATCAAGATCTAGCAAAAGATGTCTTATCAAGTTCTTAATAGTTGATCAAAAACCTGTTATTTTTATGTCATTTCGTGTTAGATTAATAGTTGATGTTATTATATTGACAATATACGCTGTCGTTTTGAGATTCCCCCACCCCGAAAAGTCCCTCATAACCGTTGCAAACCCTCTCTCAGTACCCAACCGTTTAAACCCCACTCCCTCCCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACATGTTCTCAGTCAAAATCTCCAAGTCCTCTGCTTTGGCAAAGAAAATCGAAAACCCATTTGTTTCCATCCATCAGAACTCAAAATCTCCATATTCATGTCTCCAAGAAAGCTTCTTGTTTTCTGGGTCGACGTCTTCTTCCTCATAACTCTCTTCCTCCGCCGTGGCTCTGCCGAGAACGTCAACTTCTACTTCCCATCTTTGAACTTCCAAAACCTTACCTTCCTCGGCGACTTCCACATCCGAAATGGTGTCGTGGGGCTCACCCGCCAGCTCACCGTCCCCTTCTCCAGCGCCGGTGCCGTCATCTACAACAACCCGATTCGGTTCTTCGACCCGGAGTCCAACATCACTGCTTCTTTCTCCGCAAAGTTCGCTTTCTCCATCGCCAACGTTAATCCGAGCTCCTACGGCGACGGCATATCGTTTTTCCTCTCGCTGGACAACTGGACTCTGGGCAGCCCTGGTGGATGTCTGGGTCTTGTCAATTCCTCGCAATTGACCAAGAACAAGTTCGTAGTCGTCGAATTTGACGCGAAGCTCGATTTTCACTTCGACGATCCGAACGACAATCACGTCGGATTGGACATTGAGAGCCTCAATTCGATCAAGACCTCTGATCCGATTCACAGGGTATCGATTTCAAGGGCGGGAATTCGATTACTGCTTGGATTGATTACAATAACGACCAAGAAAAGCTTAAAGTGTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0016020 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

442

Amino Acids

49.79

Weight (kDa)

9.59

Isoelectric Point (pI)

36.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55830
fragaria_vesca	FvH4_2g31170 FvH4_3g42990 FvH4_4g09342 FvH4_4g11641
malus_domestica	MD03G1026600.v1.1 MD11G1030600.v1.1
prunus_persica	Prupe.6G024000_v2.0.a1
pyrus_communis	pycom03g02180 pycom11g02420 pycom11g02430 pycom11g02480
rosa_chinensis	RchiOBHm_Chr5g0077031
rosa_laevigata	RLG00000036643
rosa_multiflora	Rmu_sc0003323.1_g000008 Rmu_sc0018789.1_g000001 Rmu_ssc0000470.1_g000027
rosa_roxburghii	Rroxscaffold_1G00005100
rosa_rugosa	Rorug05G0450500
rosa_samantha	Rh5AG505100 Rh5BG416900 Rh5BG526800 Rh5CG441400 Rh5CG550600 Rh5DG539000 Rh6AG352200 Rh6CG162900 Rh6DG154500
rosa_wichuraiana	Rw5G047130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1187
AatII	GACGTC	1 cut(s)	747
AccB1I	GGYRCC	1 cut(s)	911
AccI	GTMKAC	1 cut(s)	741
AccII	CGCG	1 cut(s)	1148
AciI	CCGC	4 cut(s)	772, 880, 978, 1262
AclI	AACGTT	1 cut(s)	1005
AclWI	GGATC	2 cut(s)	1166, 1226
AcsI	RAATTY	3 cut(s)	142, 1139, 1266
AcyI	GRCGYC	1 cut(s)	744
AfaI	GTAC	2 cut(s)	91, 540
AfiI	CCNNNNNNNGG	1 cut(s)	1051
AflIII	ACRYGT	3 cut(s)	80, 324, 613
AgsI	TTSAA	3 cut(s)	193, 817, 1257
AhdI	GACNNNNNGTC	1 cut(s)	952
AhlI	ACTAGT	1 cut(s)	202
AjiI	CACGTC	1 cut(s)	1189
AjnI	CCWGG	1 cut(s)	1075
AjuI	GAANNNNNNNTTGG	4 cut(s)	173, 205, 1109, 1141
AluBI	AGCT	6 cut(s)	185, 724, 886, 1017, 1153, 1311
AluI	AGCT	6 cut(s)	185, 724, 886, 1017, 1153, 1311
Alw21I	GWGCWC	1 cut(s)	1019
Alw26I	GTCTC	1 cut(s)	717
AlwI	GGATC	2 cut(s)	1166, 1226
ApeKI	GCWGC	1 cut(s)	1071
ApoI	RAATTY	3 cut(s)	142, 1139, 1266
AseI	ATTAAT	1 cut(s)	443
Asp700I	GAANNNNTTC	1 cut(s)	1124
AspLEI	GCGC	1 cut(s)	908
AspS9I	GGNCC	1 cut(s)	5
AsuC2I	CCSGG	1 cut(s)	950
AsuHPI	GGTGA	2 cut(s)	868, 880
AvaII	GGWCC	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	911
BanII	GRGCYC	2 cut(s)	876, 1019
BbsI	GAAGAC	1 cut(s)	739
Bbv12I	GWGCWC	1 cut(s)	1019
BbvI	GCAGC	1 cut(s)	1083
BccI	CCATC	4 cut(s)	687, 691, 817, 1004
BceAI	ACGGC	4 cut(s)	759, 899, 1039, 1045
BciT130I	CCWGG	1 cut(s)	1077
BclI	TGATCA	1 cut(s)	403
BcnI	CCSGG	1 cut(s)	950
BcoDI	GTCTC	1 cut(s)	717
BcuI	ACTAGT	1 cut(s)	202
BfaI	CTAG	2 cut(s)	203, 369
BfoI	RGCGCY	1 cut(s)	909
BglII	AGATCT	1 cut(s)	365
BisI	GCNGC	1 cut(s)	1072
BlsI	GCNGC	1 cut(s)	1073
Bme1390I	CCNGG	2 cut(s)	950, 1077
Bme18I	GGWCC	1 cut(s)	5
BmeRI	GACNNNNNGTC	1 cut(s)	952
BmgBI	CACGTC	1 cut(s)	1189
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	2 cut(s)	6, 913
BmrFI	CCNGG	2 cut(s)	950, 1077
BpiI	GAAGAC	1 cut(s)	739
BpmI	CTGGAG	1 cut(s)	886
BpuMI	CCSGG	1 cut(s)	950
Bsa29I	ATCGAT	1 cut(s)	1250
BsaBI	GATNNNNATC	1 cut(s)	315
BsaHI	GRCGYC	1 cut(s)	744
BsaJI	CCNNGG	3 cut(s)	775, 838, 1075
Bsc4I	CCNNNNNNNGG	1 cut(s)	1051
Bse118I	RCCGGY	1 cut(s)	908
Bse1I	ACTGG	1 cut(s)	1064
Bse8I	GATNNNNATC	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	1077
BseCI	ATCGAT	1 cut(s)	1250
BseDI	CCNNGG	3 cut(s)	775, 838, 1075
BseGI	GGATG	4 cut(s)	275, 679, 852, 1088
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	1 cut(s)	1051
BseMII	CTCAG	2 cut(s)	549, 634
BseNI	ACTGG	1 cut(s)	1064
BseXI	GCAGC	1 cut(s)	1083
Bsh1236I	CGCG	1 cut(s)	1148
BshNI	GGYRCC	1 cut(s)	911
BshVI	ATCGAT	1 cut(s)	1250
BsiHKAI	GWGCWC	1 cut(s)	1019
BsiSI	CCGG	2 cut(s)	909, 950
BslFI	GGGAC	3 cut(s)	18, 493, 878
BslI	CCNNNNNNNGG	1 cut(s)	1051
BsmAI	GTCTC	1 cut(s)	717
BsmFI	GGGAC	3 cut(s)	18, 493, 878
BsmI	GAATGC	1 cut(s)	236
Bsp1286I	GDGCHC	2 cut(s)	876, 1019
Bsp1407I	TGTACA	1 cut(s)	89
Bsp143I	GATC	6 cut(s)	310, 365, 403, 1171, 1218, 1231
BspACI	CCGC	4 cut(s)	772, 880, 978, 1262
BspCNI	CTCAG	2 cut(s)	548, 633
BspDI	ATCGAT	1 cut(s)	1250
BspFNI	CGCG	1 cut(s)	1148
BspLI	GGNNCC	2 cut(s)	6, 913
BspPI	GGATC	2 cut(s)	1166, 1226
BspT107I	GGYRCC	1 cut(s)	911
BsrFI	RCCGGY	1 cut(s)	908
BsrGI	TGTACA	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	1064
BssAI	RCCGGY	1 cut(s)	908
BssECI	CCNNGG	3 cut(s)	775, 838, 1075
BssMI	GATC	6 cut(s)	310, 365, 403, 1171, 1218, 1231
BssNI	GRCGYC	1 cut(s)	744
Bst2UI	CCWGG	1 cut(s)	1077
Bst4CI	ACNGT	3 cut(s)	520, 548, 892
Bst6I	CTCTTC	1 cut(s)	770
BstACI	GRCGYC	1 cut(s)	744
BstAUI	TGTACA	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	884
BstDEI	CTNAG	2 cut(s)	535, 620
BstDSI	CCRYGG	1 cut(s)	775
BstF5I	GGATG	4 cut(s)	275, 679, 852, 1088
BstFNI	CGCG	1 cut(s)	1148
BstH2I	RGCGCY	1 cut(s)	909
BstHHI	GCGC	1 cut(s)	908
BstKTI	GATC	6 cut(s)	313, 368, 406, 1174, 1221, 1234
BstMAI	GTCTC	1 cut(s)	717
BstMBI	GATC	6 cut(s)	310, 365, 403, 1171, 1218, 1231
BstMWI	GCNNNNNNNGC	2 cut(s)	986, 1023
BstNI	CCWGG	1 cut(s)	1077
BstNSI	RCATGY	2 cut(s)	16, 617
BstSCI	CCNGG	2 cut(s)	948, 1075
BstUI	CGCG	1 cut(s)	1148
BstV1I	GCAGC	1 cut(s)	1083
BstV2I	GAAGAC	1 cut(s)	739
BstX2I	RGATCY	1 cut(s)	365
BstYI	RGATCY	1 cut(s)	365
Bsu15I	ATCGAT	1 cut(s)	1250
BsuTUI	ATCGAT	1 cut(s)	1250
BtgI	CCRYGG	1 cut(s)	775
BtgZI	GCGATG	1 cut(s)	982
BtrI	CACGTC	1 cut(s)	1189
BtsCI	GGATG	4 cut(s)	275, 679, 852, 1088
BtsI	GCAGTG	1 cut(s)	963
BtsIMutI	CAGTG	1 cut(s)	963
Cac8I	GCNNGC	1 cut(s)	884
CfoI	GCGC	1 cut(s)	908
Cfr10I	RCCGGY	1 cut(s)	908
Cfr13I	GGNCC	1 cut(s)	5
ClaI	ATCGAT	1 cut(s)	1250
CseI	GACGC	1 cut(s)	1154
Csp6I	GTAC	2 cut(s)	90, 539
CviAII	CATG	4 cut(s)	9, 13, 614, 709
CviQI	GTAC	2 cut(s)	90, 539
DdeI	CTNAG	2 cut(s)	535, 620
DpnI	GATC	6 cut(s)	312, 367, 405, 1173, 1220, 1233
DpnII	GATC	6 cut(s)	310, 365, 403, 1171, 1218, 1231
DraI	TTTAAA	1 cut(s)	552
DrdI	GACNNNNNNGTC	1 cut(s)	1187
DriI	GACNNNNNGTC	1 cut(s)	952
DseDI	GACNNNNNNGTC	1 cut(s)	1187
Eam1104I	CTCTTC	1 cut(s)	770
Eam1105I	GACNNNNNGTC	1 cut(s)	952
EarI	CTCTTC	1 cut(s)	770
EciI	GGCGGA	1 cut(s)	761
Ecl136II	GAGCTC	1 cut(s)	1017
Eco24I	GRGCYC	2 cut(s)	876, 1019
Eco47I	GGWCC	1 cut(s)	5
Eco53kI	GAGCTC	1 cut(s)	1017
EcoICRI	GAGCTC	1 cut(s)	1017
EcoRI	GAATTC	1 cut(s)	1266
EcoRII	CCWGG	1 cut(s)	1075
EcoT22I	ATGCAT	1 cut(s)	14
EcoT38I	GRGCYC	2 cut(s)	876, 1019
FaeI	CATG	4 cut(s)	12, 16, 617, 712
FalI	AAGNNNNNCTT	1 cut(s)	1295
FaqI	GGGAC	3 cut(s)	18, 493, 878
FatI	CATG	4 cut(s)	8, 12, 613, 708
FauI	CCCGC	2 cut(s)	887, 1255
FbaI	TGATCA	1 cut(s)	403
FblI	GTMKAC	1 cut(s)	741
Fnu4HI	GCNGC	1 cut(s)	1072
FokI	GGATG	4 cut(s)	262, 666, 839, 1095
FriOI	GRGCYC	2 cut(s)	876, 1019
Fsp4HI	GCNGC	1 cut(s)	1072
FspBI	CTAG	2 cut(s)	203, 369
GlaI	GCGC	1 cut(s)	907
GluI	GCNGC	1 cut(s)	1072
GsuI	CTGGAG	1 cut(s)	886
HaeII	RGCGCY	1 cut(s)	909
HapII	CCGG	2 cut(s)	909, 950
HgaI	GACGC	1 cut(s)	1154
HhaI	GCGC	1 cut(s)	908
Hin1I	GRCGYC	1 cut(s)	744
Hin1II	CATG	4 cut(s)	12, 16, 617, 712
Hin6I	GCGC	1 cut(s)	906
HinP1I	GCGC	1 cut(s)	906
HincII	GTYRAC	3 cut(s)	78, 742, 796
HindII	GTYRAC	3 cut(s)	78, 742, 796
HindIII	AAGCTT	3 cut(s)	183, 722, 1309
HinfI	GANTC	6 cut(s)	68, 489, 934, 953, 1063, 1237
HpaI	GTTAAC	1 cut(s)	78
HpaII	CCGG	2 cut(s)	909, 950
HphI	GGTGA	2 cut(s)	868, 880
Hpy166II	GTNNAC	4 cut(s)	78, 208, 742, 796
Hpy188I	TCNGA	8 cut(s)	310, 688, 857, 1014, 1176, 1193, 1231, 1236
Hpy188III	TCNNGA	3 cut(s)	241, 363, 1222
Hpy8I	GTNNAC	4 cut(s)	78, 208, 742, 796
Hpy99I	CGWCG	5 cut(s)	746, 1031, 1139, 1172, 1193
HpyAV	CCTTC	2 cut(s)	844, 907
HpyCH4III	ACNGT	3 cut(s)	520, 548, 892
HpyCH4IV	ACGT	6 cut(s)	80, 324, 744, 792, 1005, 1188
HpyCH4V	TGCA	3 cut(s)	12, 236, 524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	986, 1023
HpyF3I	CTNAG	2 cut(s)	535, 620
HpySE526I	ACGT	6 cut(s)	80, 324, 744, 792, 1005, 1188
Hsp92I	GRCGYC	1 cut(s)	744
Hsp92II	CATG	4 cut(s)	12, 16, 617, 712
HspAI	GCGC	1 cut(s)	906
Ksp22I	TGATCA	1 cut(s)	403
KspAI	GTTAAC	1 cut(s)	78
Kzo9I	GATC	6 cut(s)	310, 365, 403, 1171, 1218, 1231
LmnI	GCTCC	1 cut(s)	1022
Lsp1109I	GCAGC	1 cut(s)	1083
MaeI	CTAG	2 cut(s)	203, 369
MaeII	ACGT	6 cut(s)	80, 324, 744, 792, 1005, 1188
MalI	GATC	6 cut(s)	312, 367, 405, 1173, 1220, 1233
MboI	GATC	6 cut(s)	310, 365, 403, 1171, 1218, 1231
MboII	GAAGA	5 cut(s)	181, 739, 742, 757, 934
MfeI	CAATTG	1 cut(s)	1109
MflI	RGATCY	1 cut(s)	365
MhlI	GDGCHC	2 cut(s)	876, 1019
MlyI	GAGTC	3 cut(s)	77, 962, 1057
MmeI	TCCRAC	2 cut(s)	981, 1171
Mph1103I	ATGCAT	1 cut(s)	14
MroXI	GAANNNNTTC	1 cut(s)	1124
MslI	CAYNNNNRTG	1 cut(s)	707
MspI	CCGG	2 cut(s)	909, 950
MspR9I	CCNGG	2 cut(s)	950, 1077
MssI	GTTTAAAC	1 cut(s)	552
MunI	CAATTG	1 cut(s)	1109
Mva1269I	GAATGC	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	1077
MvnI	CGCG	1 cut(s)	1148
MwoI	GCNNNNNNNGC	2 cut(s)	986, 1023
NciI	CCSGG	1 cut(s)	950
NdeII	GATC	6 cut(s)	310, 365, 403, 1171, 1218, 1231
NlaIII	CATG	4 cut(s)	12, 16, 617, 712
NlaIV	GGNNCC	2 cut(s)	6, 913
NmeAIII	GCCGAG	2 cut(s)	811, 819
NsiI	ATGCAT	1 cut(s)	14
NspI	RCATGY	2 cut(s)	16, 617
PciI	ACATGT	1 cut(s)	613
PcsI	WCGNNNNNNNCGW	4 cut(s)	1134, 1152, 1176, 1185
PctI	GAATGC	1 cut(s)	236
PdmI	GAANNNNTTC	1 cut(s)	1124
PfeI	GAWTC	3 cut(s)	489, 934, 1237
PkrI	GCNGC	1 cut(s)	1073
PleI	GAGTC	3 cut(s)	76, 961, 1057
PmeI	GTTTAAAC	1 cut(s)	552
PpsI	GAGTC	3 cut(s)	76, 961, 1057
PscI	ACATGT	1 cut(s)	613
PshBI	ATTAAT	1 cut(s)	443
Psp124BI	GAGCTC	1 cut(s)	1019
Psp1406I	AACGTT	1 cut(s)	1005
Psp6I	CCWGG	1 cut(s)	1075
PspGI	CCWGG	1 cut(s)	1075
PspN4I	GGNNCC	2 cut(s)	6, 913
PspPI	GGNCC	1 cut(s)	5
PsuI	RGATCY	1 cut(s)	365
RsaI	GTAC	2 cut(s)	91, 540
RsaNI	GTAC	2 cut(s)	90, 539
RseI	CAYNNNNRTG	1 cut(s)	707
SacI	GAGCTC	1 cut(s)	1019
SalI	GTCGAC	1 cut(s)	740
SatI	GCNGC	1 cut(s)	1072
Sau3AI	GATC	6 cut(s)	310, 365, 403, 1171, 1218, 1231
Sau96I	GGNCC	1 cut(s)	5
SchI	GAGTC	3 cut(s)	77, 962, 1057
ScrFI	CCNGG	2 cut(s)	950, 1077
SduI	GDGCHC	2 cut(s)	876, 1019
SgrAI	CRCCGGYG	1 cut(s)	908
SinI	GGWCC	1 cut(s)	5
SmiMI	CAYNNNNRTG	1 cut(s)	707
SpeI	ACTAGT	1 cut(s)	202
SsiI	CCGC	4 cut(s)	772, 880, 978, 1262
SspMI	CTAG	2 cut(s)	203, 369
SstI	GAGCTC	1 cut(s)	1019
StyD4I	CCNGG	2 cut(s)	948, 1075
TaaI	ACNGT	3 cut(s)	520, 548, 892
TaiI	ACGT	6 cut(s)	83, 327, 747, 795, 1008, 1191
TatI	WGTACW	1 cut(s)	89
TfiI	GAWTC	3 cut(s)	489, 934, 1237
TscAI	CASTG	1 cut(s)	970
TseI	GCWGC	1 cut(s)	1071
TspDTI	ATGAA	1 cut(s)	697
TspRI	CASTG	1 cut(s)	970
VpaK11BI	GGWCC	1 cut(s)	5
VspI	ATTAAT	1 cut(s)	443
XapI	RAATTY	3 cut(s)	142, 1139, 1266
XceI	RCATGY	2 cut(s)	16, 617
XcmI	CCANNNNNNNNNTGG	1 cut(s)	857
XmiI	GTMKAC	1 cut(s)	741
XmnI	GAANNNNTTC	1 cut(s)	1124
XspI	CTAG	2 cut(s)	203, 369
ZraI	GACGTC	1 cut(s)	745
Zsp2I	ATGCAT	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.