Rh6CG162900

Lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0005408
Physical Location & Seq
Forward (+)
22042073 .. 22042372
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG162900.1

Sequence Viewer

Length: 300 bp
ATGCCGCCGGACAACAAAACCCGCGGCAGCCCAGGTCGGTATCTGGGTTTAGTCAAGTCCTCTCAGATGACCAAGAACAAGTTCGTCGCCGTCGAATTCGATACTCGACTCGATTTACACTTAGACGACTCGAATGATTACCATGTGGGTCTCTACATTGAGAGCTTGGATTTGATTGAGCAAGATGCGGATTTGTGGAGCGGGCCGGCGATCACAGCCTGGTTTGCTGATATACTGTTGTTTTTTATTTTGTTAAATGAAGAAATTGCTTCTTTTTTTAGAAGAAATAGAATCCATTAA

Protein Analysis

99

Amino Acids

11.43

Weight (kDa)

4.97

Isoelectric Point (pI)

63.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 6 - 62 7.1e-11 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 201
AccII CGCG 1 cut(s) 24
AciI CCGC 5 cut(s) 5, 22, 24, 188, 201
AcsI RAATTY 1 cut(s) 95
AjnI CCWGG 2 cut(s) 31, 218
AjuI GAANNNNNNNTTGG 2 cut(s) 65, 97
AluBI AGCT 1 cut(s) 165
AluI AGCT 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 155
AoxI GGCC 1 cut(s) 203
ApeKI GCWGC 1 cut(s) 27
ApoI RAATTY 1 cut(s) 95
Asp700I GAANNNNTTC 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 203
BbvI GCAGC 1 cut(s) 39
BceAI ACGGC 1 cut(s) 74
BciT130I CCWGG 2 cut(s) 33, 220
BcoDI GTCTC 1 cut(s) 155
BisI GCNGC 3 cut(s) 5, 25, 28
BlsI GCNGC 3 cut(s) 6, 26, 29
Bme1390I CCNGG 2 cut(s) 33, 220
BmgT120I GGNCC 1 cut(s) 203
BmrFI CCNGG 2 cut(s) 33, 220
BmsI GCATC 1 cut(s) 175
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 2 cut(s) 22, 31
Bse118I RCCGGY 1 cut(s) 205
BseBI CCWGG 2 cut(s) 33, 220
BseDI CCNNGG 2 cut(s) 22, 31
BseMII CTCAG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 39
Bsh1236I CGCG 1 cut(s) 24
BshFI GGCC 1 cut(s) 205
BsiSI CCGG 2 cut(s) 8, 206
BsmAI GTCTC 1 cut(s) 155
BsnI GGCC 1 cut(s) 205
Bso31I GGTCTC 1 cut(s) 155
Bsp143I GATC 1 cut(s) 210
BspACI CCGC 5 cut(s) 5, 22, 24, 188, 201
BspANI GGCC 1 cut(s) 205
BspCNI CTCAG 1 cut(s) 76
BspFNI CGCG 1 cut(s) 24
BspTNI GGTCTC 1 cut(s) 155
BsrBI CCGCTC 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 205
BssAI RCCGGY 1 cut(s) 205
BssECI CCNNGG 2 cut(s) 22, 31
BssMI GATC 1 cut(s) 210
Bst2UI CCWGG 2 cut(s) 33, 220
Bst4CI ACNGT 1 cut(s) 237
BstC8I GCNNGC 2 cut(s) 203, 207
BstDEI CTNAG 2 cut(s) 63, 121
BstDSI CCRYGG 1 cut(s) 22
BstFNI CGCG 1 cut(s) 24
BstKTI GATC 1 cut(s) 213
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 1 cut(s) 210
BstMWI GCNNNNNNNGC 2 cut(s) 215, 224
BstNI CCWGG 2 cut(s) 33, 220
BstSCI CCNGG 2 cut(s) 31, 218
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 39
BsuRI GGCC 1 cut(s) 205
BtgI CCRYGG 1 cut(s) 22
Cac8I GCNNGC 2 cut(s) 203, 207
Cfr10I RCCGGY 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 203
Cfr42I CCGCGG 1 cut(s) 25
CviAII CATG 1 cut(s) 143
CviJI RGCY 4 cut(s) 30, 165, 205, 218
CviKI_1 RGCY 4 cut(s) 30, 165, 205, 218
DdeI CTNAG 2 cut(s) 63, 121
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
Eco31I GGTCTC 1 cut(s) 155
EcoRI GAATTC 1 cut(s) 95
EcoRII CCWGG 2 cut(s) 31, 218
FaeI CATG 1 cut(s) 146
FaiI YATR 2 cut(s) 144, 233
FatI CATG 1 cut(s) 142
FauI CCCGC 2 cut(s) 29, 194
Fnu4HI GCNGC 3 cut(s) 5, 25, 28
Fsp4HI GCNGC 3 cut(s) 5, 25, 28
GluI GCNGC 3 cut(s) 5, 25, 28
HaeIII GGCC 1 cut(s) 205
HapII CCGG 2 cut(s) 8, 206
Hin1II CATG 1 cut(s) 146
HinfI GANTC 3 cut(s) 108, 128, 291
HpaII CCGG 2 cut(s) 8, 206
Hpy188I TCNGA 1 cut(s) 66
Hpy99I CGWCG 2 cut(s) 89, 95
HpyCH4III ACNGT 1 cut(s) 237
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 224
HpyF3I CTNAG 2 cut(s) 63, 121
Hsp92II CATG 1 cut(s) 146
KroI GCCGGC 1 cut(s) 205
KroNI GCCGGC 1 cut(s) 207
KspI CCGCGG 1 cut(s) 25
Kzo9I GATC 1 cut(s) 210
LmnI GCTCC 1 cut(s) 198
LpnPI CCDG 7 cut(s) 18, 21, 29, 45, 205, 219, 232
Lsp1109I GCAGC 1 cut(s) 39
LweI GCATC 1 cut(s) 175
MalI GATC 1 cut(s) 212
MbiI CCGCTC 1 cut(s) 201
MboI GATC 1 cut(s) 210
MboII GAAGA 2 cut(s) 272, 294
MluCI AATT 2 cut(s) 95, 264
MlyI GAGTC 2 cut(s) 102, 122
MnlI CCTC 1 cut(s) 70
MroNI GCCGGC 1 cut(s) 205
MroXI GAANNNNTTC 1 cut(s) 80
MseI TTAA 2 cut(s) 254, 298
MspA1I CMGCKG 1 cut(s) 24
MspI CCGG 2 cut(s) 8, 206
MspR9I CCNGG 2 cut(s) 33, 220
MvaI CCWGG 2 cut(s) 33, 220
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 2 cut(s) 215, 224
NaeI GCCGGC 1 cut(s) 207
NdeII GATC 1 cut(s) 210
NgoMIV GCCGGC 1 cut(s) 205
NlaIII CATG 1 cut(s) 146
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PdiI GCCGGC 1 cut(s) 207
PdmI GAANNNNTTC 1 cut(s) 80
PfeI GAWTC 1 cut(s) 291
PkrI GCNGC 3 cut(s) 6, 26, 29
PleI GAGTC 2 cut(s) 102, 122
PpsI GAGTC 2 cut(s) 102, 122
Psp6I CCWGG 2 cut(s) 31, 218
PspGI CCWGG 2 cut(s) 31, 218
PspPI GGNCC 1 cut(s) 203
SacII CCGCGG 1 cut(s) 25
SaqAI TTAA 2 cut(s) 254, 298
SatI GCNGC 3 cut(s) 5, 25, 28
Sau3AI GATC 1 cut(s) 210
Sau96I GGNCC 1 cut(s) 203
SchI GAGTC 2 cut(s) 102, 122
ScrFI CCNGG 2 cut(s) 33, 220
SetI ASST 2 cut(s) 37, 167
SfaNI GCATC 1 cut(s) 175
Sfr303I CCGCGG 1 cut(s) 25
SgrBI CCGCGG 1 cut(s) 25
Sse9I AATT 2 cut(s) 95, 264
SsiI CCGC 5 cut(s) 5, 22, 24, 188, 201
StyD4I CCNGG 2 cut(s) 31, 218
TaaI ACNGT 1 cut(s) 237
TaqI TCGA 5 cut(s) 93, 99, 106, 111, 131
TasI AATT 2 cut(s) 95, 264
TauI GCSGC 2 cut(s) 7, 27
TfiI GAWTC 1 cut(s) 291
Tru1I TTAA 2 cut(s) 254, 298
Tru9I TTAA 2 cut(s) 254, 298
TseI GCWGC 1 cut(s) 27
TspDTI ATGAA 1 cut(s) 273
XapI RAATTY 1 cut(s) 95
XmnI GAANNNNTTC 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.